LOC120558587


Basic Information

Item Value
gene id LOC120558587
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13250986 ~ 13253608 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66001
CGCAGGGATGTCTCTTGGCTTCTTCAATGctctgtgtctcTTTTGGCTAACAAAGCATGCAGTGGACTCAGTCCAGTTGTCGGCTCCAGAGGTGGTAACAGGAGCATACGGGGCATCTGTGACTGTCTCTTGTCAGTACGATCTTCAATTCAAAGAATACACAAAGTACTGGTGCAAAGGACCGGTCTATGAGCTGTGTAGCAAAGTGGTGACAACACCCAGGGGGCAACATAGTGAGAGAAGCTCCATTGCTGATGATAAGGATGCAGGAGTCTTCACTGTGATTATGACTTCTCTCAAAGAAAGTGATCAGGGGATGTACTGGTGTGTCATCGCCAGACCTGGAAGGAACATCTACACTGGTGTCAGGCTCCGCGTCTCCCACACAGTGATAACCTCAACAGCCACTCCATTACTGATACTGGAACAAGATGAAATAAGTTGGTGGGCGACTCTGCGTTGGATCCtctttatttta
>XM_039799634.1
CAAGCCTACGCAAATAAACATTGGTGAAACCCCGTGAACCACCCAAATGCACAACCTTACGACATGGGAGAGATAAGAGGAAGCGATATTGCACACTTCTGTTTCACATTGTTCTTTCCATTCCCATCATAAAGATCGCAGGGATGTCTCTTGGCTTCTTCAATGctctgtgtctcTTTTGGCTAACAAAGCATGCAGTGGACTCAGTCCAGTTGTCGGCTCCAGAGGTGGTAACAGGAGCATACGGGGCATCTGTGACTGTCTCTTGTCAGTACGATCTTCAATTCAAAGAATACACAAAGTACTGGTGCAAAGGACCGGTCTATGAGCTGTGTAGCAAAGTGGTGACAACACCCAGGGGGCAACATAGTGAGAGAAGCTCCATTGCTGATGATAAGGATGCAGGAGTCTTCACTGTGATTATGACTTCTCTCAAAGAAAGTGATCAGGGGATGTACTGGTGTGTCATCGCCAGACCTGGAAGGAACATCTACACTGGTGTCAGGCTCCGCGTCTCCCACACAGTGATAACCTCAACAGCCACTCCATTACTGATACTGGAACAAGATGAAATAAGTTGGTGGGCGACTCTGCGTTGGATCCtctttattttaatgttgtgtTGTTTGGCATCAACACACTTGGCTGTGTGGAGGACAACGGCTACAAGGAAAATACAGCTGCAACAACTATTTCAACTCAAACATCTATGATTGAAAGTCACAGGTGAATTATAAACTAATTTATACTGGGGGCTACAAAACAAATCTTCCAGTGGacattctgtctgtgtgtgaattaTACTAAGAAATAAACCAAGTGGAAAAAGTGGCTTTCGGCCTCTTTTTTCTTGGTATCTAAATGATTAAAACCTGATTAATTTCGGTGCCAGAGCGTAAGATAACTTTGGGCCCAACTTTTGAATATCCAATCATCTTAAAGATTAGCACCTCTGGAGAAGTGAGGCTCTTGGCTTTCATCTAATTTATTTGCAGATGTTATATGGACCGTCATAGAGGttgactttttaaatttaacCACAAGTTTCTAGTGGTTTTATAAAAATCTGAAAGTaatgctggaaaaaaaatacCTTCAGGCATAAAGACACAAAAGTTGAATGGTGGTGATTTGCCACCAATTTTTTTGTTAATCTAAGAAAGGATTACAGAGGTATATATGATTTCTTAGGATTATTATTATGGGACACCTACAGCTGACATGGTATTTTTCTGTTCATGCAAACTGGGATTTCTTGTTACAATCTGTCACAGTCCAGCACTTAAACTGGGACAAAAACAGGAGGCATACATAACTAATAAAGTAATTCATTTACtacaaaaataatcaaaacaaGTCCAACAAATAGATGGCAGGAAGCTGTAATGTCAGTAGGGTAGGGAGAGGATGAGCAAAAATATGTTGCATGGAATGCTGTGCTGTAACAACAAGGAACAGAACCCAAAGGCCACAAAACAGAGGTGCTTGAGGTGAGAAAATCTTGGCAAGGACACCTGGCTGAGGTGTGTCCCATGCCACGGATTACCCTCCAACAGCTCTGCAGCcctgaagacagaaagcaaaGCAACAGAAAAGCACACCAAGCAGAGGGGCTGTCCCAAATCAAAGCTTAATTATAGTCGAATTCAACCGAAAATGTGACACATCAAATTCTCTAAAAGAGGCAGTGGTGGGGGCGGCCTACAGCTCACCTTGTAGAGCgcgcgccccatgtaggctcagtccttgccagCGGCCCATACTCGAATCCAAcctgaggccctttgctgcatgttgtagcccctctctctcccccatttcctgtctctcttcagCTGATCTAAATACAGGGAAAACCCTAATAAAAACATCTTCTATCAGCGTGGAAGAGGCAGTGGTGATTTGTGATATTTGTCAAGCAGATTTTATTACCCTGCTGGTTGTAGCTGCACGATGTTGGACACTTATGTCTGCTGCTTTTAGAGAACAGCATGTATTAACAATTTTATAAGCCACACCTGTACAATGCAATAAACCCTG

Function

GO: NA

KEGG:

id description
K06719 CD300; CD300 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
TU66001 False 478 TUCP 0.48 4 13252412 13253472
XM_039799634.1 True 2040 mRNA 0.43 4 13250986 13253608

Neighbor

gene id symbol gene type direction distance location
LOC120558584 cdc42,LOC100697482,LOC101164400,LOC101073733,LOC107083933,LOC103465423,LOC100691174 coding downstream 1424 13243174 ~ 13249562 (-)
dhfr dhfr,LOC103371587 coding downstream 13876 13236216 ~ 13237110 (-)
ccdc187 LOC103354907 coding downstream 335903 12896793 ~ 12915083 (-)
apex2 apex2 coding downstream 506664 12740741 ~ 12744322 (-)
LOC120559801 slc38a5,LOC104951559 coding downstream 511162 12729392 ~ 12739824 (-)
mfsd4ab mfsd4a,LOC105928558 coding upstream 5717 13259325 ~ 13262798 (-)
LOC120559884 NA coding upstream 38906 13292514 ~ 13299992 (-)
LOC120559881 NA coding upstream 53980 13307588 ~ 13328250 (-)
LOC120559526 NA coding upstream 85885 13339493 ~ 13343953 (-)
LOC120558460 NA coding upstream 142408 13396016 ~ 13406184 (-)
G49407 NA non-coding downstream 326658 12921001 ~ 12924328 (-)
G49384 NA non-coding downstream 411854 12837520 ~ 12839132 (-)
G49374 nt5dc2,LOC102799881 non-coding downstream 471666 12775917 ~ 12779320 (-)
G49372 NA non-coding downstream 479567 12768820 ~ 12771419 (-)
G49307 NA non-coding downstream 546881 12700429 ~ 12704105 (-)
G49447 LOC104955234 non-coding upstream 28379 13281987 ~ 13284250 (-)
LOC120558463 NA non-coding upstream 101509 13355117 ~ 13357805 (-)
LOC120558462 NA non-coding upstream 112655 13366263 ~ 13368373 (-)
LOC120558464 NA non-coding upstream 123019 13376627 ~ 13378863 (-)
G49514 NA non-coding upstream 178911 13432519 ~ 13433095 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other downstream 29648 12924458 ~ 13221338 (-)
prickle3 prickle3,LOC102790576 other downstream 811077 12415603 ~ 12439909 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other downstream 859309 12388981 ~ 12391677 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 1027958 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 1081777 12147414 ~ 12169209 (-)
LOC120558437 NA other upstream 54752 13308360 ~ 13312729 (-)
LOC120558461 NA other upstream 153177 13406785 ~ 13413178 (-)
zgc:66479 NA other upstream 493795 13747403 ~ 13753866 (-)
smim29 LOC104942556,LOC104932788,LOC105416285,LOC106572343,LOC105022745 other upstream 786127 14039735 ~ 14125823 (-)
LOC120558710 NA other upstream 886772 14140380 ~ 14145222 (-)

Expression


Co-expression Network