G50217 (fgd3,LOC104966710)


Basic Information

Item Value
gene id G50217
gene name fgd3,LOC104966710
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16281044 ~ 16283856 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU67071
cttaaaaagacaaagagaaacaTATTTGCAGACAGAAATTCATGTGAAACGTGAAGATCTTGTTGGACAGCGTGGTACTCAATGAATCACAATGTCTGTTTATTGATGATATGCTTGACTGCTTTTCCACTGTGCACAATCCATGTTTAAAACACTTACTGCTGCTCACTTACAGTACGACAAGAATGAGTTCTGGAGCATAAAAGGGGGTATAGTATAGGGGCAAGATTTCAGAGCACAGTACATAAATATGAGTGAGTTTACATGCACAAAGAGATCCAAtgacaaggttttttttttgctactttTGCTTAAAGGCTGCTGGCTGATAGGAGCAGGGTACAGGGTCAAGGCAGAATTAACagttttacagtacagtacttggTTTCCATCACATCACCAAAGGGAGAGAAGCAGGCAGATGGTTGCAATgctaagaaagagagagaagtatACGGAAATTATTTATTAAGCATGTGTACAAGTGGAGATATTGAGGGACTGAACCTGCAGTGCAGGATCAGAATAGAGGCAACTTGATCCCACTCTGGCTGCGGACTCTCAACAGGATGAGTCGCAATCATGACAGAGTGGTCAAGACAATTTCGGGAGGGAGTTATTGCCTTTAAAGATGAGAGAAGTATGAAGACAAGGTCTGTAAGGTGGGAACTGACAGTGGGAGCATCAGGTGGCCAGCCACAAGCGAACACATCTCTGTGTCTTTTTAAGttaaaatgtcttttgtttctttgctttcttACATCGCACTATagtatacatactgtacaatacccACTGAACTACCACTGTGTCCACAGCAGGAGTGAAGAGAACAGAGAGGTGGCGCAGGTTTCTTACACTAACATTCAATACTTAATAAACATGGGAAGGGactcacactcaaacacacacatacatactttcGCACAAATAGAAAGACACACGCAAGATTTAATGCTTCACAACACAGTCGCATGATGTACTAGAAATTTCATCTTAAGAAAAAACTCATACAGGAACTTTCTTCAGCTatattacaaataaaacatttagtccTCCCCAGCGTTTGAAAACACTATAATATCCTAACCACACGTATACATACAGTGGCGGTGTGGCTTGATAGCATAGTCATTTttctgtgtttgagagagacaAGAAGATAAAGACAGAAGAAGACGTAGCTGTGTGGTCATGATGAGAAGATTGAAGTGGCATAGGAAGGATTGGGTGGTCCTTTCaaaagaggggggaaaaaaactaaaacaaacaaaaagtgcCAAGGTAAAGTGAATTCAAGTAATGTGTGCTCTATACACaagagaaagatggagggagTCCTGTGGCTCCAACATGGCCACTACTGGCTCTTCCTGTGTTCAGTCAGATGCATCTGTGGGCGTTTCTCTGCGGGCAGCTTTGGAGAGGACGTCCACCCACTTGGCCTGAAGTTCTGCATCTTGGGCACTTAAGAGCAAAGTTTGCTGGGTGTGACTGAGCCGGAGCAGGTGTTTGATCTCCGACTTCTCGCTTCCCGATGGCGGTACCACGCTCACTTCGAACCCAGGGAGAGGCACCACCCGCGCCCCCTTGGAGTCCTGTCCACTGCTCTGCAGGTACAGCACCAGTGGCTCAGCCTTGGTGACAGCCACCCACATCTTGGACCAGCTCTTCCCTTTCTCCTGCACTTGAAGGTGGCCACATAGCAGGCAGTTTTCCCCCATTAGAGAGGTCTGTCTCTGAAAAGATACAATAATACAGAACTATATATACCAAG

Function

symbol description
fgd3 Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be involved in several processes, including filopodium assembly; regulation of GTPase activity; and regulation of cell shape. Predicted to be located in Golgi apparatus; lamellipodium; and ruffle. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: FYVE, RhoGEF and PH domain-containing protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67071 True 1777 TUCP 0.44 2 16281044 16283856

Neighbor

gene id symbol gene type direction distance location
ptpdc1b LOC103361997,LOC104940250,LOC102303597,LOC101466018,LOC102203312 coding downstream 108012 16166305 ~ 16173032 (-)
LOC120558319 wnt7a,LOC103361999,LOC103145089,LOC103385523 coding downstream 119031 16154061 ~ 16162013 (-)
nup210 NA coding downstream 185241 16066540 ~ 16095803 (-)
LOC120558787 iqsec1,LOC101467973,LOC100710993,LOC102777856,LOC106948087,LOC103145094,LOC102305730 coding downstream 219148 15968560 ~ 16061896 (-)
gp9 NA coding downstream 316139 15963557 ~ 15964905 (-)
LOC120558718 LOC104966685,LOC103361981,LOC102294611,LOC102076950,LOC102210297 coding upstream 140364 16424220 ~ 16425947 (-)
mbd4 mbd4 coding upstream 142214 16426070 ~ 16429565 (-)
plxnd1 plxnd1 coding upstream 176394 16460250 ~ 16526652 (-)
tmcc1a tmcc1,LOC102793771 coding upstream 244662 16528518 ~ 16577086 (-)
mrps25 mrps25 coding upstream 342271 16626127 ~ 16628418 (-)
G50143 NA non-coding downstream 324372 15952530 ~ 15956672 (-)
G50153 LOC101174347 non-coding downstream 347746 15930121 ~ 15933298 (-)
G50136 NA non-coding downstream 385044 15879334 ~ 15896000 (-)
G50138 LOC104940213,LOC103368778,LOC102235665 non-coding downstream 390927 15886890 ~ 15890117 (-)
G50104 NA non-coding downstream 592617 15685011 ~ 15688427 (-)
G50230 NA non-coding upstream 2465 16286321 ~ 16379623 (-)
G50278 NA non-coding upstream 133065 16416921 ~ 16418613 (-)
G50371 NA non-coding upstream 296220 16580076 ~ 16580982 (-)
G50378 NA non-coding upstream 377142 16660998 ~ 16663045 (-)
G50382 NA non-coding upstream 382194 16666050 ~ 16679676 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 1427227 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 1729486 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 1746439 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 1848050 14416336 ~ 14432994 (-)
LOC120558710 NA other downstream 2135822 14140380 ~ 14145222 (-)
LOC120559328 smim4 other upstream 822978 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 1404259 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 1551224 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 1690437 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 2590899 18874755 ~ 18886895 (-)

Expression


Co-expression Network