G50484 (rbm39,LOC103373755)


Basic Information

Item Value
gene id G50484
gene name rbm39,LOC103373755
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17074875 ~ 17079295 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU67482
gGAATGTCAAATTTGCCAAAGTTTATTGGGAGCCTTCatacaaaaaatgaaattatgGCTGTAAAAAGTTACAAAGGATTATTGTTGACATTGATATACTTTTGGCATTTAAGGCCTATTAACCCAACAGTTTTGTAACTCTttgcaatttattttaaatctaaaatgGTTTGATTTAAACAAGCAGAAAGACAGGaatatttaaaaacatacagaCCAATATACCTGTAGTTTACAACACAAACTCAAAAGATTTGAAAAGCAACTCAAAAAACCTGCCTAGTTTTCAATGGTGAACACATGAACTTGAGGCAACTTTTATTACACACAGCCAACTAATGTCAACGTGTCCTTTTCAATGACTGCAAACAATGTATTTACACTGACTTTCATGAGTGTCAGACTATCGGCGTGCCGGCATTAGGAGCTGCTTCGCCGTTACAGAATCGGGGAAAAGGTTGTGGTAGGTTGGTAAGGGAACGTAGGCAGCAGTTATCATTTTGCCTGCAAACCAGCGTCCATGAAGTGCATTTACAGTTGCCATCGCTGCTGGTATTGAGGGACACTTCACATACACATTACCTTGAGCAGAGTTCTTATCAACATAAATGTGAACAATTCCTCCATGTTTGTTGCACTCTTCAATAACATCATCTTGGATCTCGACAGCCCAGCTGGGATCGTTTTCcctgaaacaaaacaagatttGAAAGGATAATTTCACTTTACTGACTGGCCCGTATATACATTGAAAATCATTGGTGGGTTGTTTAACTGTTCATCTTATCACTACTGGCAACAAAGATCCCTTCTTACAGTGATTAATGTAAGAGATGGGAATAAAATCCTCATtttgtgtaaaaaacaaaagtttagGTGAAGCTGCAGGAGGAACAATTAGACAAAGGGTTCTTTCAATATACATCTGGGCTTCTTAAAGATTTTTTTAgggtttttcttttatttagaaCACCTGAAGACAGACAAGAAACAGGTGAGAGAAGGAATTACATGCACTAAAGGGCCTCCGGTCAGAATCAAACCCAGGcgtgcgctctaccaggtgagctataggctgctagagctgggcaatatatcaatattttgatatgagactagatatagtcttagattttggatatcgtaatataatATGGcagaagtgttgtcttttcctggttttaaaggctgcattacagtaaagtgatggcattttctgaacttaccagacggttataaatgttctattatttgcctttatccacttaaacattatatccacattactgatgattatcaaaaatctcattgtgtaattaaagctgcgagcagcgatggacgggccctcgcgcctcggggttaccggcggacggcgctccttgcgaccgtgcattcgcgtggcactcagacgccgcaaacaGTCACCAATGAAGAGGGAACTCCCCGAGTTCgacgatagctcacacaagactctacgtcatacggttcattagctgtgaaagggggcgtggctaaagcatagggggcaggtccAACCATccccaattaaaaatgaagcctctgctgagatggatacctcacacaagactaccttaaatgggtcagcatgtatgaaagggggcgtggcttaaacacggggcgggccaaaccatcaccaatgaagaaggaagtctctgctgagttcaatgatacctcacacaagggtataccttaaacggttcaaatgttatgaaagggggcgtggcttatgcaTAGGAGGCAGCCAAcccatcaccaataaagaaggaactctctgccgagttcaatgacacctcacacaagactaccttaaacggttcaaatgttatgaaagggggcgtggcctgagtaagtgggcgtggccatattatagggggcggctcagtatcacacgtagaccacacattctgagtttcatgcaaatcggatgatgtttgtcatataaggcagatttcctgttgccagcggggggcgctatgaccaaaagtcaattttggcctgtaggtgtcctcaggcccggacccttgtcaattgtgagaaatttcgggcag
>TU67483
gGAATGTCAAATTTGCCAAAGTTTATTGGGAGCCTTCatacaaaaaatgaaattatgGCTGTAAAAAGTTACAAAGGATTATTGTTGACATTGATATACTTTTGGCATTTAAGGCCTATTAACCCAACAGTTTTGTAACTCTttgcaatttattttaaatctaaaatgGTTTGATTTAAACAAGCAGAAAGACAGGaatatttaaaaacatacagaCCAATATACCTGTAGTTTACAACACAAACTCAAAAGATTTGAAAAGCAACTCAAAAAACCTGCCTAGTTTTCAATGGTGAACACATGAACTTGAGGCAACTTTTATTACACACAGCCAACTAATGTCAACGTGTCCTTTTCAATGACTGCAAACAATGTATTTACACTGACTTTCATGAGTGTCAGACTATCGGCGTGCCGGCATTAGGAGCTGCTTCGCCGTTACAGAATCGGGGAAAAGGTTGTGGTAGGTTGGTAAGGGAACGTAGGCAGCAGTTATCATTTTGCCTGCAAACCAGCGTCCATGAAGTGCATTTACAGTTGCCATCGCTGCTGGTATTGAGGGACACTTCACATACACATTACCTTGAGCAGAGTTCTTATCAACATAAATGTGAACAATTCCTCCATGTTTGTTGCACTCTTCAATAACATCATCTTGGATCTCGACAGCCCAGCTGGGATCGTTTTCcGATTGTGGGTTGAACAGATTGGACAGCTGAAGGCAGTGTGTGGCCAACGGCTGTGAAGGGAGGTTCAAGGCTTGGCTTGGAGCTGGAGTTGGAACAGATGTTGGAGCAGAAATGTTTCCAAAGGGTATGGACCCAGTCATCTGTAGAGCCTGCTGAGCAGCAGGAGGGATTTTCAGACCAGTTCCTTCTGCTAGCCGAGCCATAAGCTGTAGACGCCCTGTGGTTCCCAGGTCGATGCCAGTCCTCTCAAGTTCGTCGTTGTCCAGGAATGAGCTGGCTGTCGATGAGTCTGAGCGCTCTGTAACATGCCCCACCTTCATCGGACGTCCGGCCAGCTCAAAGCCATTGAGCTGCTCCAAGGCCTTTTTTGCACATTCTGCATCTGCAAACCGATATGAAGCCATAGCCTTTGGATCGTCCAGTCTCACTGTCCATCATTAGCTGGATTCCCTCAATCTttggaaacaaaaacacaccagGAGGATTGTCATGAATGCTTCTACAAACAAGTCAAAATGATAATTTGTACATGTGAAATGTGTTCCTGACCTTTCCAAACGGCTCAAAGATCCCTCGAAGCATTTCTTCAGTAATGTTGAAGTGCAGGGAGCCCACGTACAGCCTCATTGGACCTGAACTGCCCTTCTGTAGATTGTTGGCAGCAGCTGcagctctgtttttttctgcctgTAAT
>TU67485
gatggtacagaccaagtttgaagtccatcggatgaaatctctaggaggagttcgttaaagtatagcaccttgacttttaggcctacttcctgttgccactagggggcgctatgactaagtaaatatcggcctttatttgtcctcagggttggactcttatgaatcctgaaaagtttcgaggtaatcggacaacgtacactcgagttacacccacttcctgtttcggcggcgaaacgcacaaaatggccgccctgtCACAGcaacgccctatgacgaaaagtttttcttttaacaaattttcatctttaacgtcttaagatggcacagaccgagtttgaagttgatcggatgaaatctctaggaggagttcgttaaagtacgacatgtggaaatggccaaaatcgcactaatttcgaacatttaattcaaaatggcggacttcctgttgggtttagggtatggatctaatgaagttttttgtacatcttgacatgttacatatgtgtaccaagtttcgtgagtctacgttaaacgcactgcaggggctcaattttcttaactttctagggggcgctagcgagccatttttgtgcgcctattcccgaaacccttaaaatacatacattttcaccagacttgatgcaaccgccaaatttggtgagtttttgaatatgttaagcccctcaaaaagccaattcatttgacgggaaaaagaatagaaagaaacaataatataATTGTTAATAATTTCATAATGTCGGCGCTCTGGCcctaaatattttgtgaaagcaccaatagtcaacactacaatatcgttgcgatATCGATagaagtatttggtcaaaaatatcgtgatatttgattttatcCATATCGCCCAGACCTATAGGCCACCCCATAAATTTGGGCTTCTGAATGTTTTAAGACAAACAAATTAACTTATGGAAATGATAATGTCCTTACGATTGTGGGTTGAACAGATTGGACAGCTGAAGGCAGTGTGTGGCCAACGGCTGTGAAGGGAGGTTCAAGGCTTGGCTTGGAGCTGGAGTTGGAACAGATGTTGGAGCAGAAATGTTTCCAAAGGGTATGGACCCAGTCATCTGTAGAGCCTGCTGAGCAGCAGGAGGGATTTTCAGACCAGTTCCTTCTGCTAGCCGAGCCATAAGCTGTAGACGCCCTGTGGTTCCCAGGTCGATGCCAGTCCTCTCAAGTTCGTCGTTGTCCAGGAATGAGCTGGCTGTCGATGAGTCTGAGCGCTCTGTAACATGCCCCACCTTCATCGGACGTCCGGCCAGCTCAAAGCCATTGAGCTGCTCCAAGGCCTTTTTTGCACATTCTGCATCTGCAAACCGATATGAAGCCATAGCCTTTGGATCGTCCAGTCTCACTGTCCATCATTAGCTGGATTCCCTCAATCTttggaaacaaaaacacaccagGAGGATTGTCATGAATGCTTCTACAAACAAGTCAAAATGATAATTTGTACATGTGAAATGTGTTCCTGACCTTTCCAAACGGCTCAAAGATCCCTCGAAGCATTTCTTCAGTAATGTTGAAGTGCAGGGAGCCCACGTACAGCCTCATTGGACCTGAACTGCCCTTCTGTAGATTGTTGGCAGCAGCTGcagctctgtttttttctgcctgTAAT

Function

symbol description
rbm39 Enables RNA binding activity. Involved in regulation of mRNA splicing, via spliceosome. Located in centriolar satellite and nuclear speck. Part of protein-containing complex.

NR:

description
PREDICTED: RNA-binding protein 39 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67482 True 2069 lncRNA 0.42 3 17076941 17079295
TU67483 False 1383 lncRNA 0.44 7 17074875 17079295
TU67485 False 1657 lncRNA 0.44 4 17074875 17076804

Neighbor

gene id symbol gene type direction distance location
LOC120559002 NA coding downstream 73566 17000401 ~ 17001309 (-)
LOC120559259 LOC104927913,LOC103374533,LOC104956322,LOC106571864 coding downstream 102582 16961498 ~ 16972293 (-)
fmodb fmod coding downstream 115194 16954885 ~ 16959681 (-)
LOC120559618 magi1,LOC104927908,LOC103368435,LOC102193390,LOC102291253 coding downstream 158493 16823774 ~ 16916382 (-)
LOC120559825 LOC103362962 coding downstream 284912 16746379 ~ 16789963 (-)
pabpc1l LOC104935356,LOC100697848,LOC102784553,LOC102215180,LOC101469158,LOC102298035 coding upstream 944 17080239 ~ 17098500 (-)
LOC120558578 LOC103467546,LOC102230394,LOC106947997,LOC105927130,LOC103145058,LOC101167287,LOC104935375 coding upstream 19330 17098625 ~ 17104961 (-)
kctd6b kctd6,LOC101466953,LOC104935404,LOC100692855,LOC107097548,LOC103354431 coding upstream 36855 17116150 ~ 17119562 (-)
abhd6b abhd6,LOC103354432 coding upstream 40371 17119666 ~ 17124287 (-)
slmapb LOC103354436,LOC104935421 coding upstream 50987 17130282 ~ 17141944 (-)
G50483 rbm39 non-coding downstream 142 17071122 ~ 17074733 (-)
G50477 NA non-coding downstream 9601 17064997 ~ 17065274 (-)
G50476 NA non-coding downstream 10129 17063818 ~ 17064746 (-)
G50443 NA non-coding downstream 129903 16944771 ~ 16944972 (-)
G50389 qars non-coding downstream 360127 16714061 ~ 16714748 (-)
G50548 NA non-coding upstream 68911 17148206 ~ 17150051 (-)
G50549 NA non-coding upstream 72022 17151317 ~ 17151938 (-)
G50553 NA non-coding upstream 72905 17152200 ~ 17153427 (-)
G50567 slc6a6,LOC106905582,LOC103145023,LOC101165803 non-coding upstream 110782 17190077 ~ 17193635 (-)
G50561 NA non-coding upstream 124452 17203747 ~ 17205629 (-)
G50217 fgd3,LOC104966710 other downstream 791019 16281044 ~ 16283856 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 2221058 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 2523317 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 2540270 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 2641881 14416336 ~ 14432994 (-)
LOC120559328 smim4 other upstream 27539 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 608820 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 755785 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 894998 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 1795460 18874755 ~ 18886895 (-)

Expression


Co-expression Network