G50548


Basic Information

Item Value
gene id G50548
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17148206 ~ 17150051 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU67596
tacaatgttttattaagaaATCTTTGGCATTTTAAGAGATGTTTAGCTTACAACAGTAAGCTATATTTTCAGTAAGGCAGATTTGTTTTACAGCTGTAAATATATTAccaatttcacaaataaaatgtatttacatgtaGAGTGTGATGAAAGCAGTGTTGACATGCACTGTTTTaatttgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtgtaaacTTGACTCAGTAAGACAGTGCTAAGACTGTATGTCCAACATGCAGTTCCCCTGTATCAAGTCCACTCGCCATTTGAGCGTGTCAGAAAATCTTTCTGTGTGAAAAACAGTTGGATGTCTTTTCAGGAGGTCAAAGTGACAAGGTGGGTCACACAGGCACGCAGCAGGTGAGTAAAAGCCACACTTAAAGTAAACATCTCCTCATGGTACTCAGTGGTCATGAGTTTCTCCATTAAGGTTACCAGTGTGACTGCTGTCCTTTGGTTTTAGGGTCTGACTGGGATTTTTACTGGAACTGGAATAAATCTCCTCGTCCGAACTGCTCTCGATGTCACTGCGGTCGTCTTTTGCCACCTGTACAATGAAACAAAGtgaggaaaataaaaacaaggctAAAAGAGTGtagagccatgctagcagctcgtGAGCGTGTTAACATGCCTACAATAACAATGCTAACATCctgattagggatgcaccgaatattcggccaccgaaaattttcggccttctatatactgtatgtgacaatcagattgtagccatatttctgctagatatttttttaattaaactttaatattaatttatacaattgcaatgccttgattttagtaaagttagtacacagtcatagccataaatgcaatgatactaataattggcataatttctttcggtgtttcggttttggTTTcctcggttttcggtttcggccaagaattttcatttcggtgcatcactaatcCTGATGCAGGTAATATTAACCAGTCACCATCTTAGTGTAGCATGTTTGCGTAATAATATTttctaattagcactaaacaaaaTACAGCTGGGGCTggtgggaatgtcattagttttacaGGTATTTAATTATGAACCAaatattggacaaattaaaattgACCCAATTATAGTGCGCGATGAAAAGAGACAATTTACCCtaaggggaacatgaatgtctaccaaattaaaagggatatttcaccgctggaaagatgactatgtatttaaattgggtcatttatgtagtagaaatgtgaaaaatgtttagatattggtgccttctagacagagaaaagccagaaaatgtgtttttggctcatgtggatgaaagacaactcccagaatgcacttgcttcgcttccctacgaggccactcccaagccatgcCTAACGGTTACAGAGGGCAGCCAAATCAAAtgggttttattgtcatttcaaccagacactgtatatagtgaaacgaaacaacatttcaccgtggctcaagtgttacgcatttaaatatataaaaacgacatatgatacaggctacatttagtgcacacacatagacaataCATTAAGTGCAATTACTACTTAAAGTAGAGCATTTAAGACAGACaagggacaggacagacagacaacaaaagacagGGCATAAGTAGACTTGTAACAGAGCACTGATTGTTATAAGTTAGGTTCACCGTGAGGTGAAGGTATAATATTTTCTTGAGATTTGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67596 True 1762 lncRNA 0.38 2 17148206 17150051

Neighbor

gene id symbol gene type direction distance location
slmapb LOC103354436,LOC104935421 coding downstream 6262 17130282 ~ 17141944 (-)
abhd6b abhd6,LOC103354432 coding downstream 23919 17119666 ~ 17124287 (-)
kctd6b kctd6,LOC101466953,LOC104935404,LOC100692855,LOC107097548,LOC103354431 coding downstream 28644 17116150 ~ 17119562 (-)
LOC120558578 LOC103467546,LOC102230394,LOC106947997,LOC105927130,LOC103145058,LOC101167287,LOC104935375 coding downstream 43245 17098625 ~ 17104961 (-)
pabpc1l LOC104935356,LOC100697848,LOC102784553,LOC102215180,LOC101469158,LOC102298035 coding downstream 49706 17080239 ~ 17098500 (-)
si:ch73-233m11.2 NA coding upstream 3437 17153488 ~ 17157550 (-)
LOC120559621 LOC104935447 coding upstream 8753 17158804 ~ 17162048 (-)
LOC120558336 LOC103354442 coding upstream 59165 17209216 ~ 17240743 (-)
rpl32 rpl32 coding upstream 92829 17242880 ~ 17246203 (-)
LOC120559574 LOC104961988,LOC104935553,LOC102207720,LOC101165305 coding upstream 175156 17325207 ~ 17358698 (-)
G50484 rbm39,LOC103373755 non-coding downstream 68911 17074875 ~ 17079295 (-)
G50483 rbm39 non-coding downstream 73473 17071122 ~ 17074733 (-)
G50477 NA non-coding downstream 82932 17064997 ~ 17065274 (-)
G50476 NA non-coding downstream 83460 17063818 ~ 17064746 (-)
G50443 NA non-coding downstream 203234 16944771 ~ 16944972 (-)
G50549 NA non-coding upstream 1266 17151317 ~ 17151938 (-)
G50553 NA non-coding upstream 2149 17152200 ~ 17153427 (-)
G50567 slc6a6,LOC106905582,LOC103145023,LOC101165803 non-coding upstream 40026 17190077 ~ 17193635 (-)
G50561 NA non-coding upstream 53696 17203747 ~ 17205629 (-)
G50574 NA non-coding upstream 100599 17250650 ~ 17251274 (-)
LOC120559328 smim4 other downstream 33159 17106834 ~ 17115047 (-)
G50217 fgd3,LOC104966710 other downstream 864350 16281044 ~ 16283856 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 2294389 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 2596648 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 2613601 14532124 ~ 14534605 (-)
G50712 birc7 other upstream 538064 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 685029 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 824242 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 1724704 18874755 ~ 18886895 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 1795917 18945968 ~ 19077781 (-)

Expression


Co-expression Network