LOC120558627 (LOC103370864,LOC104963599,LOC101472162)


Basic Information

Item Value
gene id LOC120558627
gene name LOC103370864,LOC104963599,LOC101472162
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18874755 ~ 18886895 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU68271
GGCAGGTTGTCAGGGGCAGCGCAACATGGCACCAgccagttaagctaacgttagctagctatcaCGGGATTTAGTTAATGATGACACCTTTATTTATCAAAGAAAACGACTGTCGTCATACCTGTTTTTTCACTCGGTGCTGCCCTGTGTCTTTTGGTAAAAGCAGCAGAGACGACAGCGGCGATTTTTATCGAAATAGCCAGAGACTTGCAGTGGGATTTGCCGTTaaccttagctagctagctaggtttgCTAACGTCAGGCAGCCAACTAATGATATCAAACCAACAGACGTAACGCGACAGACAGCGACAGTGACATTACCTTGTAAATAGATAGCTTCAGTTTCCATTACGGTTGTTTGGTGCGAAAATGGAGAACGATCAGGGAGATTTAATGGAGCAGGAAGAACACGACGGCAGCGACAAACCCCCATCGTCCCTCAAAGCCCCTTTGCGCTCCACTCGACTGAACATCCAGAGAAGTAATGTCTGCTCTCGGGCTTATTTTGTGGTGATCATGGTCTTCTTTCATGTGTATATCCTGAATGTTATTGGCCTGCTTCTGTACGTGCACTACAACAACGGCCCCGGGGATCTTGTCAGTGGAAACGGGGCCAGCTCCACATCAGTCGGCGAAAGCGAAACCCCTTTGCCCCATCCTGCCCCAGCTGCAGGAGACCTACCGTTACACGTAGAGGACTATACTCAAAGTTACAGTCTTCCTCGCATTGAGGGGATACGGGTGGGTCACGTTCAGCAGGTGTCCCTTGTGCCAGACAGAACACATGAGATGAGGACAATCAGCCTGAAACCTCTGCTATTTGAGATCCCTGGCTTCCTGTCAGAGGAGGAGGGCCGTGTGGTGGTGCAGCTGGCTCAGCTCAAAGGTCTGATGGAGAGCCAGACGACAGCGCCCAGCCAGGGACAAGTGGAGTCAAACCAGCCACTACTTTCTTTCAGCACAGAGGAGGTCTTCAGTCTGTTGGACCTAAACCAGGATGGGTTGCTGCAGAAACAGGAGGTGACAAGAGAG
>XM_039799702.1
GTTGAAAAGTCAGTCAGGTCCAGACGATATTTTTGCCGTGGCGTTCATCCGTTAGAGGCCGCTAGAGGTTTACTGTGGGACCTGAAATGGGTTGCAAATGGCGGCTCATCTGTAGTCGTTAGTTTGCCCCGCCTTGTTGTTAGGCAGGTTGTCAGGGGCAGCGCAACATGGCACCAgccagttaagctaacgttagctagctatcaCGGGATTTAGTTAATGATGACACCTTTATTTATCAAAGAAAACGACTGTCGTCATACCTGTTTTTTCACTCGGTGCTGCCCTGTGTCTTTTGGTAAAAGCAGCAGAGACGACAGCGGCGATTTTTATCGAAATAGCCAGAGACTTGCAGTGGGATTTGCCGTTaaccttagctagctagctaggtttgCTAACGTCAGGCAGCCAACTAATGATATCAAACCAACAGACGTAACGCGACAGACAGCGACAGTGACATTACCTTGTAAATAGATAGCTTCAGTTTCCATTACGGTTGTTTGGTGCGAAAATGGAGAACGATCAGGGAGATTTAATGGAGCAGGAAGAACACGACGGCAGCGACAAACCCCCATCGTCCCTCAAAGCCCCTTTGCGCTCCACTCGACTGAACATCCAGAGAAGTAATGTCTGCTCTCGGGCTTATTTTGTGGTGATCATGGTCTTCTTTCATGTGTATATCCTGAATGTTATTGGCCTGCTTCTGTACGTGCACTACAACAACGGCCCCGGGGATCTTGTCAGTGGAAACGGGGCCAGCTCCACATCAGTCGGCGAAAGCGAAACCCCTTTGCCCCATCCTGCCCCAGCTGCAGGAGACCTACCGTTACACGTAGAGGACTATACTCAAAGTTACAGTCTTCCTCGCATTGAGGGGATACGGGTGGGTCACGTTCAGCAGGTGTCCCTTGTGCCAGACAGAACACATGAGATGAGGACAATCAGCCTGAAACCTCTGCTATTTGAGATCCCTGGCTTCCTGTCAGAGGAGGAGGGCCGTGTGGTGGTGCAGCTGGCTCAGCTCAAAGGTCTGATGGAGAGCCAGACGACAGCGCCCAGCCAGGGACAAGTGGAGTCAAACCAGCCACTACTTTCTTTCAGCACAGAGGAGGTCTTCAGTCTGTTGGACCTAAACCAGGATGGGTTGCTGCAGAAACAGGAGatgaactcTGATGAATTTTGTCACTCGCACTCTCGAGATGGAACTTGGTTGAACCCAGACAACTTACGGCAGATACTCAGTGGTCTGGAAGTCTGCCCAACGGgtgtgctgaCCTTGGAGGACTTTAGGCGTGTTTATGATGTGTCCCAGCGCCCAGGACAACAGCGAAGCGGTAAGCTCCGGAGTCAGTTcaaacagagaaacaaacatACGTGGCTTTACCAAGGCCCGGGATCCCACCAAGTGCTGCAGACACTCAGGACCAGACTAATAAGTCTGACACGTCTGCCTTCCACATTGGTTGAGCTGAGTGAGCCACTGCAGTTGATTCGCTATGATCACGGAGATTTTAGTAATGCCCACCATGATAGCAGCCCTTCTCATTCAGAGACTACCTGCGCGCACACACGACTGGCAGGAAACACATCTGCTCTCACAGAGGTCTCTTGCAGGTATCTTACCATGTTATTCTACCTCAGCTCTGTAGAGGAAGGTGGTGAGACCACCTTTCCTGTGGCAGACAACCGTACCTATGAAGAGCAGGCACTGATACAGCTTGGAGTTGATTTGACGGACACCCGGGAGACATGTGACAGAGGGAACATGAGAATAAAACCTACTGCTGGGACAGCTCTGCTCTGGTACAACCATCTATCTGATGGTAGAGGTTGGATGGGTGAGCTGGATGAGTATTCCCTCCACGGTGACTGCCCAGTCAGGCGTGGAGTGAAGTGGATGGCCAACAGCTGGGTAAATGTGGACCCAGATCACCAGCGGCAGGCCCGCTACCAGAGACTAGTTGGTCAAAGGCATCAAGCTAAGTCGGGCATGGAGGAGCATTACCAACCTCTCTCACACAGTGACCTCCATCAGGATCTATAGCCGGGCTTTTTCAATGACAAGACAAAGCCCCATGATTTTACAAGTTTTGCATTTTTGAGGCCAGTGAGACCTGACAGACCTTTCTGTAATGTCAGCTCCTATAATCAAAAGGAAAATTGCACAAAATAGCATACCAGATATCTTCTCCTTTTCAGTAAATCTGTCTTGCTTTATATTATGTCTCTCAAGCCACTGCTTGGATACATAAGTAAATTTCATCACAAAGGTTTAGTGAATTTTAATATagatttttatataaaaaatgtggCAGGCAGGGCGCCCAgatggctcaggtggtagagcgggtgcccatatatagaggtttactcctctacgcagcgggcctgggttcgactccgacctgcggccctttgctccATG

Function

NR:

description
PREDICTED: transmembrane prolyl 4-hydroxylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68271 False 1035 TUCP 0.51 3 18880365 18886753
XM_039799702.1 True 2428 mRNA 0.50 9 18874755 18886895

Neighbor

gene id symbol gene type direction distance location
si:ch211-117c9.5 slc6a8,LOC101473935,LOC102296397,LOC106523826,LOC103370863,LOC102778284 coding downstream 1586 18855940 ~ 18873169 (-)
LOC120559674 LOC103370862 coding downstream 47983 18818842 ~ 18826772 (-)
LOC120559673 LOC104946588,LOC103370859 coding downstream 56925 18801947 ~ 18817830 (-)
samhd1 samhd1 coding downstream 87472 18775750 ~ 18787283 (-)
LOC120558486 tp53inp2 coding downstream 151546 18713626 ~ 18723209 (-)
parapinopsina LOC103370869,LOC104963629 coding upstream 44080 18930975 ~ 18933494 (-)
capza1b capza1,LOC104955722,LOC103367229 coding upstream 334125 19221020 ~ 19225831 (-)
cacna2d3a LOC103362818,LOC101467919 coding upstream 551733 19438628 ~ 19575574 (-)
atp6ap1lb LOC104933206,LOC103362820,LOC100695140,LOC101467308 coding upstream 701389 19588284 ~ 19602069 (-)
b4galt3 LOC103362816,LOC104933217,LOC104966142 coding upstream 717861 19604756 ~ 19614597 (-)
G51069 NA non-coding downstream 116254 18758042 ~ 18758501 (-)
G51068 sna2 non-coding downstream 134412 18738483 ~ 18740343 (-)
G51064 NA non-coding downstream 161542 18712675 ~ 18713213 (-)
G50991 NA non-coding downstream 239520 18634465 ~ 18635235 (-)
G50945 NA non-coding downstream 369739 18504469 ~ 18505016 (-)
G51088 NA non-coding upstream 35968 18922863 ~ 18928835 (-)
G51122 apeh,LOC103467450 non-coding upstream 340426 19227321 ~ 19227905 (-)
G51147 NA non-coding upstream 440757 19327652 ~ 19415195 (-)
G51228 lrtm1,LOC102799284 non-coding upstream 569757 19456652 ~ 19459405 (-)
G51236 NA non-coding upstream 708699 19595594 ~ 19597508 (-)
samd10b samd10,LOC107570869 other downstream 773183 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 979673 17835080 ~ 17895082 (-)
G50712 birc7 other downstream 1184995 17688115 ~ 17689760 (-)
LOC120559328 smim4 other downstream 1759708 17106834 ~ 17115047 (-)
G50217 fgd3,LOC104966710 other downstream 2590899 16281044 ~ 16283856 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 59073 18945968 ~ 19077781 (-)
LOC120558911 LOC103362803,LOC100693258 other upstream 912310 19799205 ~ 19815318 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 1933276 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 2281009 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 2312445 21199340 ~ 21216719 (-)

Expression


Co-expression Network