esyt1a (LOC104932417,LOC104956886,LOC103356920)


Basic Information

Item Value
gene id esyt1a
gene name LOC104932417,LOC104956886,LOC103356920
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21199340 ~ 21216719 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69042
TGAAGTTTTATATGCTTTAACGAGAGCTTTATTAAAGTTACTTTTATAAATCAAAGTACTAAAAACCTAGACCCTCACATTTACCACTGCAAACAGAGGTATGATACTGTAAGCAGAGTCTACATCACTGTGCttttatgaaaagaaaactTTCTAGATACTGAAAACACATCGCTGGTGTTCTCACACCCATGCTTCTTTGTGTTCTACGTGTTCGTGGCGCTAAATGCAACAGGCTGAAGCTGTTGGCCAtttatttttcaagcaaaacaGTTATGACCTTATGAGAAGTAAGCTAATATTGAACGCCATCAGCGGGACAGCATCTACGTACCACCACTCTCACCTCACCACGAAGGCTCTGCCACTGATTTGTAGTGATGGAAAGAAAATAGTGGTTTTAAGTGTCAGAACTgaagaagaaaactgctgaGCTTTGACATTATTTGAACATATCATCATGTTTCTGCTGAAGTTGTTGATTAAAGTTTGCACTCTcatgaatcaaaa
>XM_039800997.1
ATGCCAACCGCGGATGCCGAGCCGGGGATGAGTGGAGGCACGGCGATTTCAGCCCCGGCCTTACCGAGCCAGCCCCCAGGTGAACGCGCATTGAATGTGCTGTGGTCGTTTGCGAAATGTCTCGCTGCTCTTCTACCAGTGTATCTGGCAGGATATTATGGCTTCAGCATCAGTGTAGTCCTGTTCGGTCTGATGATCTACATGGGATGGAAACACAGTCGACTGGAGAAAGTGATGAGGCTAAAGTCTGCCATGTACCTCCTGGAGAACGAGAGGCTTTTCACCACCGAGAAGGCTTTCAGAGCTAAAGGGGATTTACCTCCCTGGGTCAACTTTCCAGATGTGGAGAAAGCGGAGTGGCTGAATAAGATCCTGCAGCAGGCTTGGCCCTTTATAGGCCAGTATCTGGAGAAGTTGCTAGTGGAAACCATTGCTCCTGCCATCCGTGCCTCCAGCATTCATCTGCAGACTCTCAGCTTTACTAAGGTCAACATAGGAGAAAAGGCTTTGAAGGTGGTTGGTGTAAAGGCTCACACAGAACACGATAAGAGACAAGTTATGTTGGATTTGTACCTGAGCTACGCTGGTGATGTTGAAATCAACGTAGAAATCAAGAAGTACTTTTGCAAGGCCGGAGTGAAAGGAGTCCAGCTCCATGGGAAGCTGCGTGTGATCCTCGAGCCTCTGATCGGAGACGTCCCACTGGTTGGAGCAATCACAATGTTCTTCATCCGCAGGCCTAAACTGGACATCAACTGGACCGGGCTGACCAACCTGTTAGATATACCCGGGCTGAATGCCATGTCGGACACTATGATAATGGATGCAATTGCCTCCCACTTGGTGCTCCCCAACCGTCTAACTGTTCCCCTGGTGGCCAACCTGCACGTTGCGCAGCTCCGCTCCCCTCTCCCACGGGGAGTTGTGCGTATCCACCTGCTGGAGGCTGAGGACCTGATGGCCAAGGATACGGTCATCAAGGGCATAATCGACGGGAAGTCTGACCCGTATGCCGTTCTGCGTGTAGGAACCCAGATCTTCACCTCTCATCACGTGGACAGCAACCTGAACCCACAGTGGAGGGAGATGTATGAGgtgatTGTCCATGAAGTACCTGGTCAGGAGTTGGAAGTGGAAGTTTTTGACAAAGACCCAGACCAGGATGACTTCCTGGGGAGGGTCAAGGTCGATCTTGATATTGTAAGGAAGGCCAGAGTTGTGGATGATtgGTTTAATCTGAGGGACGTCCCATCCGGCAGTGTTCACCTCCGGCTGGAGTGgctctctctgctgtcctctGCTGACAGACTGAGTGAGGTGACCCAGAAGAACCAGAACTTGACCAATAAGATGACTGATCCTCCATCTTCTGCCGTCATAGCTATCTATCTTGATCAAGCTTACCAACTGCCTATGAGAAAAGGCAATAAGGACCCAAGCCCAATGGTACAGATTTCCATTCAGGATGCAACTAAAGAGAGCAAGACTTGCTATGGGACCAACAGCCCTGTGTGGGAGGATGCCTTTACCTTCTTTATTCAGGATCCTCGCAAGCAGGACATTGACATTCAAGTGAAAGACGATGACCGTGCTCTGTCCCTGGGCAGTTTGACCATCCCTCTGACCCGTATTTTGGCGAGCCCTGAACTCACCATGGACCAGTGGTTCCAGTTGGAGAATTCTGGTTCTGCCAGCCGCATCTATGTCAAAATTGTGCTAAGGGTTTTGTGGCTAAATGATGATGCCACTCCTACGACTCCATCTCCCCGGCCTTCAGCCCCTGGGCCCGGGATGGGTCAGGGGGGAATCACATCAGAACTGAACCCCATAGGGCCTGGCGGGTTAGGTAAACCTCAACCATCACGACCACAGCACACCACGCCCGACCCAGAGTTTGCAACTGAGGGAGTGCTGCGTATCCACCTGGTGGAGGCCCAGAACCTGATAGCTAAGGACAACTTCATGGGGGGCATGGTGAAGGGAAAAAGTGACCCCTATGTCAAGATTCGCGTGGCTGGTATCACCTTCCGTAGCCACACCATCAAAGAGAACCTCAATCCCATGTGGAATGAACTCTATGAGGTTATTTTGACCCAGCTTCCTGGTCAAGAGATCCAGTTTGAGTTGTTTGACAAGGACATCGATCAGGATGACTTCCTCGGAAGGTTCAAGCTTAACCTACGAGATATCATCAGCGCACAATTCAACGATACGTGGTACACTCTTAATGATGTGAAGTCAGGCCGAGTTCACCTGGTGCTGGAGTGGCTGCCCAGAGTCTCCGACCTTCCCAGACTGGAGCAGATCTTGCAGTACCAGTCCCAGCAGGTGTACCACAATAAGGTTGTTCCATCATCGGCTGTGCTGTTTGCGTATGTGGAGCGTGCCCATGGCCTGCCGTTGAAGAAGAGCGGGAAGGAGCCGAAGGTCGGGGCTGAGATTACCCTCAAAGGAGTTTCACACAGAACCAAGATTTGTGAGCGTTCTACATCCCCTCGATGGGACGAAGCCTTTCATTTTCTGGTTCGTGACCCCGGAGATGAAACATTCACAGTGAAGCTGTCCCATAGCTGGGGCCAGGCCCTTGGGTCCATCACACTTCCTCTCAAAGAGGTGCTGTTTGAGCCAGGCTTGGTGCTGGACCGCTGGTTCAATCTGGATGGAGCACTGCCAGAAAGCCAGATACTTATGAGGGCCACGCTCAAGGTCTTGGACACTCAGCTGGCAGTGTGTCGTAGGGCTCCGGGGGATGCAGCTAATGACGGCAGTGGAGAAGAAGTCCTTCCCAGATGGGTTCCTTCCCATCTTGACCTCAGACATAGAAGTGGATTGGCCATGGCTGATAACGCAAATTCAGCAGGCCAGGTGAAGCTTACCGTCGGCTACTCCATGGAGGAGAGCAGACTTTACATCACCGTTCACTCCTGCAGAGCCCTGCAAGCCTGCTCCAAGGACGGTGCAGACCCTTATGTTTCCTTCATCCTGCTGCCTGACAAGAAGGCCACCACCAAGAGGAGGACTGCCACCAAGAAGAGAGACCTCAACCCAGAATTCAGCGAGAGATTTGACTTTGACTTCTCTCTCGAGGAGTCCATGCAGAGAAGACTGGACTTGTCTGTGAAGAACAGCGTCTCCTTCatgagcagagagagggagctTATCGGCAAGTTGCAACTGGACCTGGACCAAATTGACCTGAAGACTGGTGTCACACAATGGTATGATTTGGTAGCAGAGACCAACTAGAAGAATCAACGGTTGGCCTCAAGTACTATATAACGTTAAGTGTTGCTTCTGTGATCTGTTTGTATATTCAGCTTAAATGAAAATTCCCACCATCACTGAAGGAAAGAAATGACATATCTGCTCCACAACAACACAGTTCATCAGTATTTATGAAACTTTACATGTAGCTTATCATCCGTAAAGTGTTTACTGTTGTTAATCCATGCTGTCTTGGACAGATTCTTCAGTAgaatattttggctgaatagaTATTTGATATTAATGCAACTATGTTGCACAACCTACCGAGTTTATATGTCTTCAAAAGCATGCCAAAGTCCTCTTTGAattttattcagaaaaagggCTTATGCTGTGGTCAATATCTTAAGGTGTTATATGTTTTATGGATTTGTAGCATTCCAACACAACAGAGAGAAGTATCTTtgaatcttttttcttttcttttttttttttacaattttcaaaTAATTCCCGAAATTACTTTGTTTATATACGTTTATATTATTGCCTTATGTATTACAAAACTGTGCACAGTTTGTCAGTGTTTATGAATTATGTTCCAAATGAAGTTTTATATGCTTTAACGAGAGCTTTATTAAAGTTACTTTTATAAATCAAAGTACTAAAAACCTAGACCCTCACATTTACCACTGCAAACAGAGGTATGATACTGTAAGCAGAGTCTACATCACTGTGCttttatgaaaagaaaactTTCTAGATACTGAAAACACATCGCTGGTGTTCTCACACCCATGCTTCTTTGTGTTCTACGTGTTCGTGGCGCTAAATGCAACAGGCTGAAGCTGTTGGCCAtttatttttcaagcaaaacaGTTATGACCTTATGAGAAGTAAGCTAATATTGAACGCCATCAGCGGGACAGCATCTACGTACCACCACTCTCACCTCACCACGAAGGCTCTGCCACTGATTTGTAGTGATGGAAAGAAAATAGTGGTTTTAAGTGTCAGAACTgaagaagaaaactgctgaGCTTTGACATTATTTGAACATATCATCATGTTTCTGCTGAAGTTGTTGATTAAAGTTTGCACTCTcatgaatcaaaa

Function

NR:

description
PREDICTED: extended synaptotagmin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69042 False 510 lncRNA 0.38 1 21199340 21199849
XM_039800997.1 True 4323 mRNA 0.48 31 21199340 21216719

Neighbor

gene id symbol gene type direction distance location
LOC120559628 LOC108235222,LOC103385139,LOC106524753,LOC103362054 coding downstream 58278 21139903 ~ 21141062 (-)
rbms2b LOC104956888,LOC103362050,LOC102783848,LOC102303282 coding downstream 133314 21048844 ~ 21066026 (-)
rarga rarg coding downstream 193072 20963746 ~ 21006268 (-)
hoxc13a hoxc13 coding downstream 288923 20906056 ~ 20910417 (-)
hoxc12a hoxc12,LOC108235205,LOC107390914 coding downstream 300205 20895268 ~ 20899135 (-)
pa2g4b LOC104932430,LOC103356918,LOC101170587,LOC101465390 coding upstream 7360 21224079 ~ 21233429 (-)
erbb3b LOC103356917 coding upstream 17547 21234266 ~ 21248157 (-)
arf3a arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding upstream 33982 21250701 ~ 21255464 (-)
wnt10b wnt10b,LOC102780570 coding upstream 41542 21258261 ~ 21277735 (-)
ikzf4 LOC103356912,LOC106096427,LOC104956881 coding upstream 65238 21281957 ~ 21291146 (-)
G51673 NA non-coding downstream 31592 21166722 ~ 21167748 (-)
G51606 NA non-coding downstream 150554 21046049 ~ 21048786 (-)
G51620 NA non-coding downstream 157396 21037082 ~ 21041944 (-)
G51614 NA non-coding downstream 167641 21025133 ~ 21031699 (-)
G51589 hoxc10,hoxc8,hoxc11,LOC102193660,LOC100690382,LOC101470732,LOC103467376,LOC102786831,LOC106947643,LOC106565461,LOC105016991,LOC103385114 non-coding downstream 246558 20862226 ~ 20952782 (-)
LOC120559347 NA non-coding upstream 3248 21219967 ~ 21222632 (-)
G51721 NA non-coding upstream 74427 21291146 ~ 21293845 (-)
G51767 NA non-coding upstream 177723 21394442 ~ 21395700 (-)
G51834 NA non-coding upstream 281425 21498144 ~ 21503262 (-)
LOC120559689 NA non-coding upstream 296284 21513003 ~ 21515984 (-)
fmnl3 fmnl3 other downstream 297 21167904 ~ 21199043 (-)
LOC120558386 hoxc10,LOC100690382 other downstream 246822 20820171 ~ 20952518 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 1384022 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 2121559 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 2312445 18874755 ~ 18886895 (-)
si:dkey-151g10.3 wnk3 other upstream 753333 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 1006430 22223149 ~ 22229421 (-)
G52226 NA other upstream 1312887 22529606 ~ 22530708 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other upstream 1997379 23214098 ~ 23218900 (-)
G52501 eno1,LOC104965722,LOC103151087 other upstream 2091781 23308500 ~ 23319684 (-)

Expression


Co-expression Network