G52679 (pgd,LOC102797219)


Basic Information

Item Value
gene id G52679
gene name pgd,LOC102797219
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23995628 ~ 24001632 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70357
TCCACACTTCAGACATGTGTTGACACACCCCGAACAGGCCAGCAGCATAAAGGGTCTGTCACCAGACAGGCCTTTTAAACTGAATATCCTGTTTATATATCAGACAACTTATGTCACTTGTTGCCTAATTTAGTGCTGCACACAAACATCTTAATCCTGTTTACAGCACCCAGAGAGTAAGGAGCATACAAGCTAATTATAAAGGGATTGAAATCTTTATTTAGCCTAATACAGTACTGTGCAGTGGTTCACCTTAATCCAATGTTAACACCGTGAACCCTGGGCCAAACATGACTGGTGAACATTAGCTTGACAGCCTGCATAATATTCAAAACGTAGCTGcaccaaaacacacagagtGTAGAGTGTACGACACACATAATTTATGATTCCACTTCTTGATAAATAAAACTGCAACAATAAACTGCATCTTTGAGGAGTACAACATCAGATTAAGGCGATTCTTTGAAGAGGGGGGGCTGGCTCTTAAATATTCAGGCATGGTTATAAAGATGGAATGTGTAACATGTATTCTTCTCTCACAGATAACTTCCCCTCGTCCTTCCATCTTGTTTTCGTTTTTTGAGTGATGTGAAGATGATCCTTAAGCATTGTAGGACGAAGAGGAGACATTTCCACCGTGGCCGGTCCAGTTGGTGTGGACGAATTGACCGGGGTTGGACAGCAGCTCATATGTGTGGGCTCCAAAGTAGTCCCTCTGAGccTGAAGGAGATTGGCTGGCAGCTTTTCATGTCTGTAACCATCATAGAAGGACAGAGCTGTGGTGAAACAAGGCATCGGGATGCCATGCTGGACTCCAGTGCTGACTGCTCTGCGCCATGACTCCTGAACAAAGAGATTAAAACAGAGTTGCCACCGTCGATGATGATATCCCCAGCCTCAAGAAGAAACCAGTTTGTCGATGAAGTCATCCACAGCCTGTCCAGCCTTGACCAGCAGGATGATCCTCCTGGGCTTCTTCAGCTTGGACACCATGTCCTCCAGAGACTCTGCGCCAATCACCTTGGAGCCCTTCGCCTCATTCTTCAGGAAGTCATGCACCTTGGACACGGTCCGGTTGTAAGCACAGACCTATGGGAGAGGTTTGGTTAATTACTGAGTGAAAAaaagtaaaggaaa

Function

symbol description
pgd Predicted to enable NADP binding activity and phosphogluconate dehydrogenase (decarboxylating) activity. Predicted to be involved in D-gluconate catabolic process and pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within D-gluconate metabolic process and pentose-phosphate shunt. Predicted to be active in cytosol. Is expressed in several structures, including axis; chordo neural hinge; digestive system; sensory system; and solid lens vesicle. Orthologous to human PGD (phosphogluconate dehydrogenase).

NR:

description
6-phosphogluconate dehydrogenase, decarboxylating

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70357 True 1141 lncRNA 0.45 4 23995628 24001632

Neighbor

gene id symbol gene type direction distance location
lzic lzic coding downstream 101444 23891799 ~ 23894184 (-)
her9 hes4,LOC102778090 coding downstream 293199 23700576 ~ 23702429 (-)
perm1 LOC103364029 coding downstream 355230 23629441 ~ 23640398 (-)
noc2l noc2l coding downstream 407376 23558897 ~ 23588252 (-)
ca6 ca6,LOC102780476 coding downstream 695938 23293203 ~ 23299690 (-)
tardbpa tardbp,LOC106534252 coding upstream 6369 24008001 ~ 24021872 (-)
pex14 pex14 coding upstream 264542 24266174 ~ 24319003 (-)
cort cort,LOC101173302,LOC102226263,LOC100698045,LOC103363980 coding upstream 355156 24356788 ~ 24358011 (-)
srm srm coding upstream 359320 24360952 ~ 24365511 (-)
exosc10 exosc10,LOC102796841 coding upstream 368786 24370418 ~ 24384608 (-)
G52677 kif1b non-coding downstream 20108 23974843 ~ 23975520 (-)
G52664 NA non-coding downstream 71959 23923208 ~ 23923669 (-)
G52663 ube4b non-coding downstream 72639 23922222 ~ 23922989 (-)
G52654 ube4b non-coding downstream 86709 23906911 ~ 23908919 (-)
G52638 clstn1,LOC102777235 non-coding downstream 104645 23860753 ~ 23890983 (-)
G52692 NA non-coding upstream 11331 24012963 ~ 24013251 (-)
G52706 NA non-coding upstream 106852 24108484 ~ 24108714 (-)
G52732 NA non-coding upstream 323388 24325020 ~ 24326976 (-)
G52746 NA non-coding upstream 365517 24367149 ~ 24367469 (-)
G52765 NA non-coding upstream 384271 24385903 ~ 24386621 (-)
G52501 eno1,LOC104965722,LOC103151087 other downstream 675944 23308500 ~ 23319684 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other downstream 776728 23214098 ~ 23218900 (-)
G52226 NA other downstream 1464920 22529606 ~ 22530708 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other downstream 1766207 22223149 ~ 22229421 (-)
si:dkey-151g10.3 wnk3 other downstream 1980585 21970052 ~ 22015043 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other upstream 333517 24335149 ~ 24339456 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other upstream 748799 24750431 ~ 24785005 (-)
acot7 acot7,LOC102782704 other upstream 1909123 25910755 ~ 25972322 (-)
emc1 NA other upstream 2135366 26136998 ~ 26147245 (-)
G53196 NA other upstream 2211361 26212993 ~ 26214882 (-)

Expression


Co-expression Network