G55883


Basic Information

Item Value
gene id G55883
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 37925745 ~ 37926128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU74709
gtgcatctcactatctttgtggggacctgtcattgacataatgcattccctagccccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccctaaccttaaccatcacaactaaatgcttaaccttaccctaaccttaaccatcacaactaaatgcctaaccttaactcttaccctaaccttaacccctaccctcaccctaaccataacctaattctaaccctaatcctaaaaccaagtcttaaccctcaaacagaccTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74709 True 277 lncRNA 0.42 2 37925745 37926128

Neighbor

gene id symbol gene type direction distance location
LOC120559052 NA coding upstream 192348 37716912 ~ 37733397 (+)
abcd1 LOC104935476,LOC100703385,LOC101070791,LOC102205298 coding upstream 209740 37674109 ~ 37716005 (+)
LOC120559048 LOC102298439,LOC101473297,LOC102198303,LOC106941622,LOC103130507,LOC106910181 coding upstream 312738 37542874 ~ 37613007 (+)
abt1 abt1 coding upstream 397368 37519828 ~ 37528377 (+)
cdk16 LOC101471048,LOC102196872,LOC103374710,LOC102224171,LOC100701773 coding upstream 420459 37480539 ~ 37505286 (+)
mecp2 mecp2,LOC102300625 coding downstream 347132 38273260 ~ 38302427 (+)
rtca rtca,LOC102794842 coding downstream 436354 38362482 ~ 38377654 (+)
hdac6 NA coding downstream 515274 38441402 ~ 38473917 (+)
lhfpl4b LOC107099607,LOC103460219,LOC106530513 coding downstream 562381 38488509 ~ 38497459 (+)
LOC120559889 LOC101079871,LOC107557552,LOC101066234,LOC106676044 coding downstream 688075 38614203 ~ 38623939 (+)
G55882 NA non-coding upstream 4916 37917810 ~ 37920829 (+)
G55880 NA non-coding upstream 42732 37882305 ~ 37883013 (+)
G55861 NA non-coding upstream 57801 37846172 ~ 37867944 (+)
G55855 NA non-coding upstream 120038 37709947 ~ 37805707 (+)
G55868 NA non-coding upstream 124612 37779015 ~ 37801133 (+)
G55888 NA non-coding downstream 24195 37950323 ~ 37950660 (+)
G55908 NA non-coding downstream 147458 38073586 ~ 38123920 (+)
G55917 NA non-coding downstream 179405 38105533 ~ 38144212 (+)
G55923 NA non-coding downstream 197939 38124067 ~ 38130190 (+)
G55929 NA non-coding downstream 253857 38179985 ~ 38180676 (+)
G55842 abcd1,LOC104935476,LOC100703385,LOC106511174 other upstream 192469 37686769 ~ 37733276 (+)
ccdc120a NA other upstream 263928 37620630 ~ 37661817 (+)
G55835 NA other upstream 410374 37509624 ~ 37515371 (+)
G55800 mthfr other upstream 627030 37296642 ~ 37298715 (+)
rtel1 rtel1,LOC102780551,LOC104957570,LOC104948519,LOC102211395,LOC107579445,LOC107580599 other upstream 795112 37069438 ~ 37130633 (+)
srpk3 LOC102780066 other downstream 27616 37953744 ~ 37993017 (+)
G55919 NA other downstream 185043 38111171 ~ 38236855 (+)
LOC120558454 LOC104955491 other downstream 454466 38380594 ~ 38392578 (+)
cxxc1a LOC106910851,LOC103130742,LOC106940064,LOC107099357,LOC101080107,LOC106536805 other downstream 485934 38412062 ~ 38439413 (+)
G55956 NA other downstream 509952 38436080 ~ 38437223 (+)

Expression


Co-expression Network