G55938 (LOC103365588,LOC102782772,LOC101480057,LOC102306209)


Basic Information

Item Value
gene id G55938
gene name LOC103365588,LOC102782772,LOC101480057,LOC102306209
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38254293 ~ 38268002 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU74789
accacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccacacacacacacacacacacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacattctctctctctctctctctctccacacacacacacacacacacacacacacacacacactctctctcacacacacacacacacacacacacacacactctctctctcacacacacacacacacacacacacactctctctctcacacacacacacacacactctctcacacacacacacacacacacactctctctctcacacactcactctctctctctctcacactcacagtctcacacacagtcacagtctctcacacacatacacacacacacacacacacaaggtgaaACAACCCAAGTGGCTGCTAATCAAGATAAACTGTGAACTTTAAACTCAGAAGGTGTTGCTGTCTCTCATCCATCAGGTGTGAATGTGACGGGTGCAGCCCCCAGTGCGGCGTGGTACGGTGGCCCTGCAGGGACATCAGctCCTCCTCCGTACAGAGCGTACACCACCCTCAGAGTTCCCTCACAGCTCGGCGCTCAGCTCTCCGACAAACGAGGATCGGCCGACAGTCTGGTGGAGGCGGTCCTGATCTCCGAGGGTCTCGGCCTTTACGCTCGGGATCCGAAGTTTGTGGCGTTTGCGAAGCGGGAGATCGCCGACGCGTGTCACATGACGGTGGACGAGATGGAGTCGGCCGCCAGCGACCTGCTCGGCACGGGCAGCCACGGTTTCCTCGGCAACGCCGCCGCGGACCCAGGCGCGCTCTACAGCGACGAGGAGCCAATCAGAACCGGCCGCGACGAGGACGAGCTGGCCGACGAGATGACCTGTGTGACGTCATTCTGATGGGCTGATGCTCTGGATCAATCAGACATGAGATACTGAGATGGATAGACATCAGTGATTGACAGGAcattggaccaatcagagatgATACTGAGATAGATAGACATCAGTGATTGACAGGAcattggaccaatcagagatgATACTGAGATAGATAGACATCAGTGATTGACAGGAcattggaccaatcagagatgATACTGAGATAGATAGACATCAGTGATTGACAGGAcactggaccaatcagagatgATACTGAGATAGATAGACATCAGTGATTGACAGGAcattggaccaatcagagatgAGACTGAGATAGATAGACATCAGTGATTGACAGGACATTGGACCAATCGGGTGACAGGACAGAGAAGAGGGCGGGGTTTAATCAAAAGTGATATTGACTGATGagatttgtggaaaaaaaaatcgatGGAAAATGGCCGCCAGCAGAGTGTGACTCAGCGCTGTCGTGTCGTCAGGTGGTTAGGTCGTTACCATGGTGAACGCCGCTAAGCTGCACAGAATCACACtttacccacaatgcattgatggcagttttacacattgtgtaaattattatttataattctCCAACAGGAAACATGAACAGATTTAGGCCCAACAGTTACCGTCACGTAAACACAGATTAGCATTGTGCTGTAACTGATTAGCTTGAAATGCAAATTGCATCTTCTACCTCAAAATATAACGCTTTGCAACAAGCTAGCTCAAAACTAGCCGCTCACACAGCCGTGTTAGCTTGTTTTGTGGTATTTAACACGATTTGTTTATGTTAGCATTATCAGTAGCTGGGCAGCTAGCTGCTAGAACACATCCACACCAACGACTATAAAGCTGTCAGACGCTAATaatgaaacctagctaacagatAATAGCCAGCTACATTGCTATGTAAGCTACTGTTACATTTGTTCTGTAGTTGGCAGCTTGCCAGTGTTTAATGTTACTTCAGAACAGAAGTCATTGacgatgtttacatgcacactaacaCTGTTATTTCACTATTATTCAGACTATTCCGAATTCATTTTCATTAGTAATGTAAACATCTTAGTGGGAATATTGTCTCTTTCAGAGTACAGGGCAAAAATCTGAatattttgtgcatgtaaaTATCTGTAAACAAGTTTTGTTACAGTGACTAACAAGTTTACATGTCAAAGTTGAACTCCACACGCAAAATACAAACAAGAACAAACCTCTTCCTAACGTTAAAATAAGATGAAAGTCAACGGTAAATTATTTCCGAActgagggccctatcttgcacccggcgcggcgcaaagcccgacgcatgTGTCTTTCCTAGgttaagaccgacccagttgtcagtttcccgtccagcacctatgttgtttaaataacaaatggaCCCAcgcccatctgtggccccatgggcgtgctggtcttacagggagatgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggagtattgctatcttgaggcagcgggaagtgatcgcaccattgaccaacaaaaacctggtctaaagtcaataacgcagcatttcattgttattttaacagagcattagtaaaatgctcctaggctcgtgcacagcgcgcgcacactatgcttgttacacacacacacacacacacacacacacagcagcacacacacacacacagcagcacacacacacacacacacacacacacacacacacacatgcagaagattacaaataaaaatattacggtgcaaatcctccatcataacagcaatgctccaaggtccaaacgcgcctggcttttaaaaggaatgggagatgatctctgattggttgatgaatgggagatgatctctgattggttgattgcatgttacgcccaaaacacacctctaattaatgaagacactaaggacaaccctttagaaccaggcgcccggcacacaggACCCTTTTTACCACCGTCAGACTAgcaaaaagtggatttggacacgccctaaacacacctgctccAGGCGCTTACATCGTCAATTATTTCCGTTAACAGCGTGAATAAATGCACGGATGTGTTCAGTGTGATTCCGTCAGCTGACGTTTACGTGTCCTGGAGGTAAATGTCCACAGGGGCGTTTTTGGAACAGGAGGGATCCCTCTGCTTCCCAGCATTGGACGCTTGATGGGTTCGCCTCCAGCAGTTATCACTTACTCTCAAATTAAACATAAGAGACTCTTAACTTTGTAAGCAGAATTCtagaaatgtgaaaattacTCTGAGCCAAACTGTTTTATAAATATtaattttgtgttgtgtgtgtctctcctggACAAGTACCGTGAAGATGAGCAGAAGTGGCTGCTGCATCACTCaaatttaatttcctttttttaaatcgctgctCATTGAAGACTTTGGCTTCAGAGGTGACGACTCTCACGGAGCACATAAACCGCAGTGAAAACTTCATTACGGGGCCATCGAAAAGACAAACTCCAGAACTGTTATTCACGTGCATTTATCCCATGAGAGCAGTGGTGAAGAAACTGACGGGCCAAGGCAACCGTGAcggctgcacctgattggacgaacgtttCACACGCGTGACGGCTCGTTTGGAAAACTTTGGCTGTGTTCCAAATCTCATACTTTTTCTTTCTACTTTCAGTACGTACGGCAGATGCACTAACAAAGTCTGTACTGTTGCGTGCAGTGTGCATACGATCGGGACATTCTTCACAGCATTGCTCCTTGGACTTTGACTCTCTTGCTCACATATGCTGCGCAAAGGATTGTGGGTCATAATAGCTAGGAAAGCATGCTGGCTTACATACTACAAAATCTGACCGAATGCAATGGGACATCCTGGGCTGAATCTCACTTCTCTTATTTGATATTTCGTCGCTCCTTGGTTGAACCGGAAGTCGTTCTGGCCCTCCTTCGTAAAGGccatctcaaagctcttattccttcGCCGAGggtggaggagagaggatggaggagggatctctgaggagctatgagagaggatggaggagggatctctggggagctatgagagaggatggaggagggatctctggggagctatgagcgaggatggaggagggatctctggggagctatgagagaggatggaggagggatctctgaggagctatgagcgaggatggaggagggatctctgaggagctatgagagaggatggaggagggatctctgaggagctatgagagaggatggaggagggatctctgaggagctatgagagaggatggaggagggatctctgaggagctatgagagaggatggaggagggatctctgaggagctatgagagaggatggaggatggatctctgaggagctatgaggatgcagagagcagccttcctggaagccgtgcagctgaaggagttgctaactccgcccaaacagctgacaaagtcacgtgacgcttcagaggaaaggacgtctcatccctctaaaaacacatttcctcgtttcctctctcctcgcacGATGTCCTCACATCCCTCCCATGCTTCCTCGGTGGGACTAACACGcaaggaagggaagcaagtgaaggaaacgtGGATGCAATTTAACGGAACTGAGATTCAGCCCGGATATTTTTTGCCAGACTGCATTCAACAAACTACATACTGGGACGTACTGTACTAAATCTTTTCTGCCATACTAAATAGTACTAAATAGTATGAGTATGAGTATTGGAACGCAGGGTTTTtcttattttacgaaaatagttcaccgacgtgtgttttctaaaaacattttatgctgcagtcttcattttagatcgacaaaggtcagtttgaaagaatTTTTCAGGAGTTTCGAGGCACCCgatttgcataaagtagcctggacttaactttatgcaaatgagtaGCGGGAAAAACTCAACGCATcgtctcttaaaaaaaaaaaaacgcggcGATGCAACCACAATGCATTGCGCGGCTGCTTACGTAGACATTTAATAGCGTGGAAAACGCGCTCCCTGTGGACACGTACACGTACCGCGAGTGTGTTTCAGAGGTTGCGGCTGAGTTTTTGTATATCGGGATCTCCGATGTATTTTAATGCTTTAATTCTAACGATGCtcgtcacta

Function

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74789 True 5105 lncRNA 0.47 4 38254293 38268002

Neighbor

gene id symbol gene type direction distance location
plxnb3 LOC102313277,LOC102199036,LOC101474638,LOC102780548 coding upstream 312323 37743984 ~ 37941970 (+)
LOC120559052 NA coding upstream 520896 37716912 ~ 37733397 (+)
abcd1 LOC104935476,LOC100703385,LOC101070791,LOC102205298 coding upstream 538288 37674109 ~ 37716005 (+)
LOC120559048 LOC102298439,LOC101473297,LOC102198303,LOC106941622,LOC103130507,LOC106910181 coding upstream 641286 37542874 ~ 37613007 (+)
abt1 abt1 coding upstream 725916 37519828 ~ 37528377 (+)
mecp2 mecp2,LOC102300625 coding downstream 5258 38273260 ~ 38302427 (+)
rtca rtca,LOC102794842 coding downstream 94480 38362482 ~ 38377654 (+)
hdac6 NA coding downstream 173400 38441402 ~ 38473917 (+)
lhfpl4b LOC107099607,LOC103460219,LOC106530513 coding downstream 220507 38488509 ~ 38497459 (+)
LOC120559889 LOC101079871,LOC107557552,LOC101066234,LOC106676044 coding downstream 346201 38614203 ~ 38623939 (+)
G55932 NA non-coding upstream 59441 38194387 ~ 38194852 (+)
G55929 NA non-coding upstream 73617 38179985 ~ 38180676 (+)
G55917 NA non-coding upstream 110081 38105533 ~ 38144212 (+)
G55923 NA non-coding upstream 124103 38124067 ~ 38130190 (+)
G55908 NA non-coding upstream 130373 38073586 ~ 38123920 (+)
G55967 NA non-coding downstream 61661 38329663 ~ 38330943 (+)
G55946 NA non-coding downstream 85888 38353890 ~ 38450672 (+)
G55957 NA non-coding downstream 163564 38431566 ~ 38437103 (+)
G55951 NA non-coding downstream 187324 38455326 ~ 38501868 (+)
G55988 NA non-coding downstream 194614 38462616 ~ 38495712 (+)
G55919 NA other upstream 17438 38111171 ~ 38236855 (+)
srpk3 LOC102780066 other upstream 261276 37953744 ~ 37993017 (+)
G55842 abcd1,LOC104935476,LOC100703385,LOC106511174 other upstream 521017 37686769 ~ 37733276 (+)
ccdc120a NA other upstream 592476 37620630 ~ 37661817 (+)
G55835 NA other upstream 738922 37509624 ~ 37515371 (+)
LOC120558454 LOC104955491 other downstream 112592 38380594 ~ 38392578 (+)
cxxc1a LOC106910851,LOC103130742,LOC106940064,LOC107099357,LOC101080107,LOC106536805 other downstream 144060 38412062 ~ 38439413 (+)
G55956 NA other downstream 168078 38436080 ~ 38437223 (+)
irak1 NA other downstream 303154 38571156 ~ 38603728 (+)
LOC120559555 NA other downstream 425123 38693125 ~ 38815201 (+)

Expression


Co-expression Network