cxxc1a (LOC106910851,LOC103130742,LOC106940064,LOC107099357,LOC101080107,LOC106536805)


Basic Information

Item Value
gene id cxxc1a
gene name LOC106910851,LOC103130742,LOC106940064,LOC107099357,LOC101080107,LOC106536805
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38412062 ~ 38439413 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU74813
gtctctctctctctctctctccatctgtctgtctctctctccaggtGACAGAAGGTGATGGTGAGGACACAGATCTTCAGATCTTCTGTGTGTCCTGCAGTCATCCCGTGAACCCCAAGGTGGCGCTGAGACACATGGAGAGATGCTACGCTAAGTATGAGAGTCAGACATCATTTGGTTCCATGTACCCAACACGAATTGAGGGGGCGACCCGGTTGTTCTGTGACGTGTATAACCCTCAGAGTAAGACCTACTGTAAGCGGCTCCAGGTTTTGTGTCCTGAACACTCCCGAGATCCCAAGGTAACCGTGGTAACCGTTTAAC
>TU74815
tttcggtggccgaatattcggtgcatccctactctCAACAATTAACATCACGGTAATGGCTGGAGAACAGAACTTaatcctgtctctctgtctctgtgtgtgtgtgtgtctgtctgcctgtctgtgtgtctctctgtctgtctgtctgtctttctggccctctctctgtgtctgtctgtctgtctgcctgcctgcctctctctctccgtctgtctgtctccctgtctgtctctctctctctctctctctgtctgtctctccgtctgtctgtctccctgtctgtctctctctctctctctctgtctgtctctctctctgtctgtctccctgtctgtctctctctctcagtggtATAAGCTGGACGAGCTGTTTGAGCAGGAGAGGAACTTGAGGACAGCGATGACGAATCGAGCCGGTTTATTGGCTCTGATGCTGCACCAGACCATCCAGCACGACCCAATCACAACCGACCTGCGCTCTGCCAaggacaggtagacagacagacagacagacagacagacagacagacagacagacagagctcttctgtctgaaatgtgtttgaatatttcagtctgaGAACATGCACATTACAGAGCCGTCTGTCCCTCTGTATCTCGGTTGATATCAGTATTATCAGAGTCATCTTTAATGTTTCTATACTGTTTTATTCCTGAAGAACTACACTACCCATAACTCCCCCAGTCGGAGACGTAAACCACTACAGTCCAGCAGAATCAAGTGTTCAATAATCTATAAAACAATAcggcattatgaaataaatacaGAGAAAATATGTGATGTTTATATAGTGCAATACATGTTTAAtcctttcacaataagagctcATTGCAGGTTATTCCAGACAGATCGACAGGCAAGCACTTTTTTGATCCTTACGACTAAATGCATTGTTACAGCACATTAATATCAATCAATATAACTCAAATCTGAAGCTAAACTCAACACAACACTACGGTTTCATCATCAAGTCTTTCTGCTTTGGTTTAAATCAGGAGGGTCTAACTCAACTTCTCTAAGGGCCAGACATGCAGAGTTTAtagacatgcttttatttcatcgaaaagtcaaatatttttgacTGTTTTGTATATCTCACGTAGCAGGAGTGTCAAACTcgactggaaaataagaatcacatcaggggcctgacatgtttagtttattaacatgcttttatttaagagaaaagtcaaatatcttccTGATATAGTCTTCTCtcttacagtttggtcaacataaagccccaaaaaaaatcagcaaaaagttcctcagccatcagaGATGTCTGAGGAACCTGGTGATAGTCTGCTACCAGACTATCACCAGCCTGTTTCCAGGCTGGTGATAGTCTGCTACCTGGTGATACTCTGCTACCTGGTGATAGTCTGCTACCAGGTGATAGTCTGCTACCAGGTGATAGTCTGCTACCAGGTGATAGCAAtatctttttccaaagttttttttttcacaatgtttttgtcatttttttcagccttttcagCGTTTTTCTCAATGATGGCTAAGGACGTATTTTCCTAACTTTTTcggggctttatgtggaccaaactgtaagagaGAAGACTTTATGAGACATGctataatacagtcaaagatatgttacttttgtcttaaattAACGCATGttaataaactctacatgtctggccctggatGACAATAATAGCATTTTCTTGGCATATAAATCTATATCTCTTCTGTATTTCTTCATATggttgtgtatttatttaatattgaacacTTGTGTGAATGATACGCACACGACATGCAGCTAAAACTTCAATATGTTCTTATATTATCTCATTTTATATCACAGTGTTATCACTACAGTTGGTTTTATATCTGATATTGTTCCATCATGTTGTTTTCTACTCGTTGTTCATGTTGTATTCAAAGTGATGTTTCATTAAAAAACTGACGATCTTTT
>XM_039800482.1
ggaagagggaggtgAAGATGAAGAgcgaggaggggaggaggaggagggaggaggaagagaggttCCCATGCCGACCCCCAAAGGTCCTGTTTACTGTGTCTGCAGGAAACCAGACATCAACTGTTTCATGATAGGGTGTGACAGCTGCTCTGAGTGGTTTCATGGGAAGTGTGTAGGAGTTTCGGAAAAATCAGCTAAATCCATCCGAGTGTGGTACTGTCCGTCCTGCAAAGACAAAAACTCGTCTCTGGAGATTAAATACCGTCCAAAGAAGAACAAggagaaggaagagaaagagtCAGAGccggagatggagatggaggacAAACCCGATGGAGACGGCAGCTCCACCCTCCAGGCCAAGATGGACAGGAGGCGGGGCTCACAGATCAAGCGCTCAGCCCGGATGTGTGGGGAGTGTGACGCCTGTCTGAGGACGGAGGACTGCGCTCAGTGTGACTTCTGTAAAGACATGAAGAAATTCGGCGGTCCAAACAAAATCCGGCAGAAGTGCCGCATGCGGCAGTGCGAGGTCCGAGCCCGGAAGATGCTTCGGGTCAAAGACGAGGAGATGAGTCGCAGCGGCGCCAGGGGGCGTGGCCTGTCGAGGAAGGGGGCGGGGCATCAgaccgaggaggaggaggaagaggaggacggcGATGAAGAGGCGGTCTTCAGTGAGAGCGAGCTGGAGCTGTACGAGCAGTACAAAGCTGCAGGATACAGAGACCTGGTGTGGCACAGCGAGGAAGAGGACGCTCAGTCGGACTGTCTGAGGAAGAAGGCCGTGAAGGTGAAACACGTCAAGAGACGAGAGAAGAAGACGGAGAAGAAGAAGTCTGTCTCTGCGCCGAAAGAGGAAGTGAAGCCCGAAGTGAAGCCCCGGCGCCACAAAGCCAAGCAGCGCCACAGGGAGCGCGTGCGGCACAGCGAGCGTGGAGGAGAGGGCGGGGCTAAGGAGGTGGGGGGGGCCATGCGGCAGTGTCTGGGACCAGGATGTGTCCAACCGGCGAGGACCAACTCCAAGTACTGTTCTGACGACTGTGGCATGAAGCTCGCCACCAATCGTATCTATGAGATCCTTCCTCAGAGGATCCAGCAGTGGCAGCAGAGCCCGTGCGTTGCCGAGGAGATGGGGCGGAGACAGCTGGAGCGAATCAGGAAGGAGCAGCAGGCGGCGAGGCTCCGCCTCACGCTGATGGAGAAACGCTTCCACGAGCTGGAAGGCATCATCGCCAACGCCAAACAGCAGCAGGTCCAACACGGGGCAGaggtGACAGAAGGTGATGGTGAGGACACAGATCTTCAGATCTTCTGTGTGTCCTGCAGTCATCCCGTGAACCCCAAGGTGGCGCTGAGACACATGGAGAGATGCTACGCTAAGTATGAGAGTCAGACATCATTTGGTTCCATGTACCCAACACGAATTGAGGGGGCGACCCGGTTGTTCTGTGACGTGTATAACCCTCAGAGTAAGACCTACTGTAAGCGGCTCCAGGTTTTGTGTCCTGAACACTCCCGAGATCCCAAGGTAACCGTGGTAACCtctctctctctctgtctgtctctctctctgtctgtctccctgtctgtctctctctctcagtggtATAAGCTGGACGAGCTGTTTGAGCAGGAGAGGAACTTGAGGACAGCGATGACGAATCGAGCCGGTTTATTGGCTCTGATGCTGCACCAGACCATCCAGCACGACCCAATCACAACCGACCTGCGCTCTGCCAaggacaggtagacagacagacagacagacagaacagacagacagacagacaggacagacagacagacagacagacagagctcttctgtctgaaatgtgtttgaatatttcagtctgaGAACATGCACATTACAGAGCCGTCTGTCCCTCTGTATCTCGGTTGATATCAGTATTATCAGAGTCATCTTTAATGTTTCTATACTGTTTTATTCCTGAAGAACTACACTACCCATAACTCCCCCAGTCGGAGACGTAAACCACTACAGTCCAGCAGAATCAAGTGTTCAATAATCTATAAAACAATAcggcattatgaaataaatacaGAGAAAATATGTGATGTTTATATAGTGCAATACATGTTTAAtcctttcacaataagagctcATTGCAGGTTATTCCAGACAGATCGACAGGCAAGCACTTTTTTGATCCTTACGACTAAATGCATTGTTACAGCACATTAATATCAATCAATATAACTCAAATCTGAAGCTAAACTCAACACAACACTACGGTTTCATCATCAAGTCTTTCTGCTTTGGTTTAAATCAGGAGGGTCTAACTCAACTTCTCTAAGGGCCAGACATGCAGAGTTTAtagacatgcttttatttcatcgaaaagtcaaatatttttgacTGTTTTGTATATCTCACGTAGCAGGAGTGTCAAACTcgactggaaaataagaatcacatcaggggcctgacatgtttagtttattaacatgcttttatttaagagaaaagtcaaatatcttccTGATATAGTCTTCTCtcttacagtttggtcaacataaagccccaaaaaaaatcagcaaaaagttcctcagccatcagaGATGTCTGAGGAACCTGGTGATAGTCTGCTACCAGACTATCACCAGCCTGTTTCCAGGCTGGTGATAGTCTGCTACCTGGTGATACTCTGCTACCTGGTGATAGTCTGCTACCAGGTGATAGTCTGCTACCAGGTGATAGTCTGCTACCAGGTGATAGCAAtatctttttccaaagttttttttttcacaatgtttttgtcatttttttcagccttttcagCGTTTTTCTCAATGATGGCTAAGGACGTATTTTCCTAACTTTTTcggggctttatgtggaccaaactgtaagagaGAAGACTTTATGAGACATGctataatacagtcaaagatatgttacttttgtcttaaattAACGCATGttaataaactctacatgtctggccctggatGACAATAATAGCATTTTCTTGGCATATAAATCTATATCTCTTCTGTATTTCTTCATATggttgtgtatttatttaatattgaacacTTGTGTGAATGATACGCACACGACATGCAGCTAAAACTTCAATATGTTCTTATATTATCTCATTTTATATCACAGTGTTATCACTACAGTTGGTTTTATATCTGATATTGTTCCATCATGTTGTTTTCTACTCGTTGTTCATGTTGTATTCAAAGTGATGTTTCATTAAAAAACTGACGATCTTTTATTA

Function

NR:

description
PREDICTED: CXXC-type zinc finger protein 1-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14960 CXXC1, SPP1, CPS40; COMPASS component SPP1

RNA

RNA id representative length rna type GC content exon number start site end site
TU74813 False 324 lncRNA 0.51 3 38427148 38430508
TU74815 False 1969 lncRNA 0.40 2 38437419 38439409
XM_039800482.1 True 3253 mRNA 0.47 12 38412062 38439413

Neighbor

gene id symbol gene type direction distance location
rtca rtca,LOC102794842 coding upstream 34408 38362482 ~ 38377654 (+)
mecp2 mecp2,LOC102300625 coding upstream 109635 38273260 ~ 38302427 (+)
plxnb3 LOC102313277,LOC102199036,LOC101474638,LOC102780548 coding upstream 470092 37743984 ~ 37941970 (+)
LOC120559052 NA coding upstream 678665 37716912 ~ 37733397 (+)
abcd1 LOC104935476,LOC100703385,LOC101070791,LOC102205298 coding upstream 696057 37674109 ~ 37716005 (+)
hdac6 NA coding downstream 1989 38441402 ~ 38473917 (+)
lhfpl4b LOC107099607,LOC103460219,LOC106530513 coding downstream 49096 38488509 ~ 38497459 (+)
LOC120559889 LOC101079871,LOC107557552,LOC101066234,LOC106676044 coding downstream 174790 38614203 ~ 38623939 (+)
hcfc1b NA coding downstream 189547 38628960 ~ 38672644 (+)
LOC120559063 LOC106516718,LOC103372410 coding downstream 347908 38787321 ~ 38804328 (+)
G55967 NA non-coding upstream 81119 38329663 ~ 38330943 (+)
G55938 LOC103365588,LOC102782772,LOC101480057,LOC102306209 non-coding upstream 144060 38254293 ~ 38268002 (+)
G55932 NA non-coding upstream 217210 38194387 ~ 38194852 (+)
G55929 NA non-coding upstream 231386 38179985 ~ 38180676 (+)
G55923 NA non-coding upstream 281872 38124067 ~ 38130190 (+)
G55951 NA non-coding downstream 15913 38455326 ~ 38501868 (+)
G55988 NA non-coding downstream 23203 38462616 ~ 38495712 (+)
G55982 NA non-coding downstream 42667 38482080 ~ 38486003 (+)
G55958 NA non-coding downstream 54337 38493750 ~ 38497923 (+)
G55953 NA non-coding downstream 59340 38498753 ~ 38577831 (+)
LOC120558454 LOC104955491 other upstream 19484 38380594 ~ 38392578 (+)
G55919 NA other upstream 175207 38111171 ~ 38236855 (+)
srpk3 LOC102780066 other upstream 419045 37953744 ~ 37993017 (+)
G55842 abcd1,LOC104935476,LOC100703385,LOC106511174 other upstream 678786 37686769 ~ 37733276 (+)
ccdc120a NA other upstream 750245 37620630 ~ 37661817 (+)
irak1 NA other downstream 131743 38571156 ~ 38603728 (+)
LOC120559555 NA other downstream 253712 38693125 ~ 38815201 (+)
LOC120559064 magix,LOC103365596,LOC102076977,LOC102203881 other downstream 365999 38805412 ~ 38937843 (+)
G56032 NA other downstream 420360 38859773 ~ 38895663 (+)
G56033 NA other downstream 435414 38874827 ~ 38899283 (+)

Expression


Co-expression Network