G55982


Basic Information

Item Value
gene id G55982
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38482080 ~ 38486003 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU74850
actcattgaatgagaaggtgtgtccaaacttttggcctgtactgtaaaaaaaaaaagaaaaggtcaaatgtgacccgaggacaacatgagggttaaagcTGTTTGTTCGGTGTAGCGCAAAGCTGGTAACGgtcgtctggttaacaccagtttttagccgggactgtccttcctttgccgtacctgaagttgctgcattctggctgctgtctggagattccttcgtgcacaactcgtattctttcggatgttttgtaccagatgttgtaacagcggccatgttgtgtatagtttagggtcctcgccaccaccagaccaatcagcattgaacagattgaacatgtagctggacttgaatggccttcttttgactgaaagttctgccaaacaacaacttgttctgctcaccagatccatgtccacttcctcacagcctgctgcgttgaacgctccacctacgtaaacatcTTCCCGTAAccaacggcgccgtcactacggcgaccagcgtGGCGCgccgtagtgcaagcgtagggttcggttccctgggaaataattctaaggttcggcagaaaccagaACCACCGTCAGAAAGCCCAAATATCCAGCCCAATCAGAAGCTgtatcctggattcggtgcatccctgcgTTTAAGGTTGAGgcgtttgtgtttctgtgtctgaggTGCGTTAGATTTACAGACCGTGTCGGGCTGTGAAGCGGTGTTACCGTGGAGATGGGAGGAGGTTTTGTGTGCTGTGCAATATTCCTTTTTGTAAACgtttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74850 True 784 lncRNA 0.49 2 38482080 38486003

Neighbor

gene id symbol gene type direction distance location
hdac6 NA coding upstream 8163 38441402 ~ 38473917 (+)
rtca rtca,LOC102794842 coding upstream 104426 38362482 ~ 38377654 (+)
mecp2 mecp2,LOC102300625 coding upstream 179653 38273260 ~ 38302427 (+)
plxnb3 LOC102313277,LOC102199036,LOC101474638,LOC102780548 coding upstream 540110 37743984 ~ 37941970 (+)
LOC120559052 NA coding upstream 748683 37716912 ~ 37733397 (+)
lhfpl4b LOC107099607,LOC103460219,LOC106530513 coding downstream 2506 38488509 ~ 38497459 (+)
LOC120559889 LOC101079871,LOC107557552,LOC101066234,LOC106676044 coding downstream 128200 38614203 ~ 38623939 (+)
hcfc1b NA coding downstream 142957 38628960 ~ 38672644 (+)
LOC120559063 LOC106516718,LOC103372410 coding downstream 301318 38787321 ~ 38804328 (+)
otud5a otud5 coding downstream 646417 39132420 ~ 39186033 (+)
G55946 NA non-coding upstream 31408 38353890 ~ 38450672 (+)
G55957 NA non-coding upstream 44977 38431566 ~ 38437103 (+)
G55967 NA non-coding upstream 151137 38329663 ~ 38330943 (+)
G55938 LOC103365588,LOC102782772,LOC101480057,LOC102306209 non-coding upstream 214078 38254293 ~ 38268002 (+)
G55932 NA non-coding upstream 287228 38194387 ~ 38194852 (+)
G55958 NA non-coding downstream 7747 38493750 ~ 38497923 (+)
G55953 NA non-coding downstream 12750 38498753 ~ 38577831 (+)
G55954 NA non-coding downstream 13642 38499645 ~ 38534236 (+)
G55976 NA non-coding downstream 49744 38535747 ~ 38537137 (+)
G55996 LOC103367257,LOC102314167,LOC107391471,LOC102203308 non-coding downstream 52760 38538763 ~ 38543507 (+)
cxxc1a LOC106910851,LOC103130742,LOC106940064,LOC107099357,LOC101080107,LOC106536805 other upstream 42667 38412062 ~ 38439413 (+)
G55956 NA other upstream 44857 38436080 ~ 38437223 (+)
LOC120558454 LOC104955491 other upstream 89502 38380594 ~ 38392578 (+)
G55919 NA other upstream 245225 38111171 ~ 38236855 (+)
srpk3 LOC102780066 other upstream 489063 37953744 ~ 37993017 (+)
irak1 NA other downstream 85153 38571156 ~ 38603728 (+)
LOC120559555 NA other downstream 207122 38693125 ~ 38815201 (+)
LOC120559064 magix,LOC103365596,LOC102076977,LOC102203881 other downstream 319409 38805412 ~ 38937843 (+)
G56032 NA other downstream 373770 38859773 ~ 38895663 (+)
G56033 NA other downstream 388824 38874827 ~ 38899283 (+)

Expression


Co-expression Network