G55996 (LOC103367257,LOC102314167,LOC107391471,LOC102203308)


Basic Information

Item Value
gene id G55996
gene name LOC103367257,LOC102314167,LOC107391471,LOC102203308
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38538763 ~ 38543507 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU74870
CCCCATTGACtttgcagacagacaggagtgttgcattgtgggtagtTTGCAGGCGACCCACTGGTGGTTTACTCCGGTGTTTTCTGCTTCCTGTCAGTTCACATCTGATTGGCGAAGGAGGTGGGCGCCCCCTGACCGTACTCTGCATCCTGGTTGTATCCTTGCTGGCTGTAATCGGGTTGGTAGCCTCCCTGGTTGCTGGCGTACGGGTCTTGTTCGTACGCCCCCTGCTGGCCGTAAGCGTCTGGTGCAGCAGCTTTCTCCTGAGGAGGTGGAGCTCGCATGAAGGGAGCGATGATGCCTGTCTCCTTAAAGACGAACCACAGGTTTCCCACCCACAGGACCAAGTTAATAAAACCAAA

Function

NR:

description
PREDICTED: synaptophysin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74870 True 362 lncRNA 0.55 3 38538763 38543507

Neighbor

gene id symbol gene type direction distance location
lhfpl4b LOC107099607,LOC103460219,LOC106530513 coding upstream 41304 38488509 ~ 38497459 (+)
hdac6 NA coding upstream 64846 38441402 ~ 38473917 (+)
rtca rtca,LOC102794842 coding upstream 161109 38362482 ~ 38377654 (+)
mecp2 mecp2,LOC102300625 coding upstream 236336 38273260 ~ 38302427 (+)
plxnb3 LOC102313277,LOC102199036,LOC101474638,LOC102780548 coding upstream 596793 37743984 ~ 37941970 (+)
LOC120559889 LOC101079871,LOC107557552,LOC101066234,LOC106676044 coding downstream 70696 38614203 ~ 38623939 (+)
hcfc1b NA coding downstream 85453 38628960 ~ 38672644 (+)
LOC120559063 LOC106516718,LOC103372410 coding downstream 243814 38787321 ~ 38804328 (+)
otud5a otud5 coding downstream 588913 39132420 ~ 39186033 (+)
pim2 pim2,LOC107397278 coding downstream 646576 39190083 ~ 39200407 (+)
G55976 NA non-coding upstream 1626 38535747 ~ 38537137 (+)
G55954 NA non-coding upstream 4527 38499645 ~ 38534236 (+)
G55951 NA non-coding upstream 36895 38455326 ~ 38501868 (+)
G56007 NA non-coding downstream 97168 38640675 ~ 38641106 (+)
G56008 NA non-coding downstream 101352 38644859 ~ 38659272 (+)
G56009 NA non-coding downstream 133818 38677325 ~ 38677715 (+)
G56020 NA non-coding downstream 135898 38679405 ~ 38680617 (+)
G56016 NA non-coding downstream 147309 38690816 ~ 38691562 (+)
cxxc1a LOC106910851,LOC103130742,LOC106940064,LOC107099357,LOC101080107,LOC106536805 other upstream 99350 38412062 ~ 38439413 (+)
G55956 NA other upstream 101540 38436080 ~ 38437223 (+)
LOC120558454 LOC104955491 other upstream 146185 38380594 ~ 38392578 (+)
G55919 NA other upstream 301908 38111171 ~ 38236855 (+)
srpk3 LOC102780066 other upstream 545746 37953744 ~ 37993017 (+)
irak1 NA other downstream 27649 38571156 ~ 38603728 (+)
LOC120559555 NA other downstream 149618 38693125 ~ 38815201 (+)
LOC120559064 magix,LOC103365596,LOC102076977,LOC102203881 other downstream 261905 38805412 ~ 38937843 (+)
G56032 NA other downstream 316266 38859773 ~ 38895663 (+)
G56033 NA other downstream 331320 38874827 ~ 38899283 (+)

Expression


Co-expression Network