Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC120559555 |
| gene name | NA |
| gene type | misc |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053116.1 |
| NCBI id | CM020913.1 |
| chromosome length | 44101041 |
| location | 38693125 ~ 38815201 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU74897 | True | 3441 | lncRNA | 0.43 | 2 | 38807312 | 38810780 |
| TU74899 | False | 1905 | lncRNA | 0.47 | 3 | 38810830 | 38815201 |
| TU74901 | False | 3391 | lncRNA | 0.43 | 3 | 38807312 | 38810780 |
| TU74902 | False | 697 | lncRNA | 0.45 | 3 | 38693125 | 38810780 |
| XM_039801333.1 | False | 3305 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801334.1 | False | 3286 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801335.1 | False | 3248 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801336.1 | False | 3242 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801337.1 | False | 3242 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801338.1 | False | 3236 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801339.1 | False | 3235 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801340.1 | False | 3229 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801341.1 | False | 3223 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801342.1 | False | 3267 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801343.1 | False | 3197 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801344.1 | False | 1955 | mRNA | 0.47 | 3 | 38812464 | 38814869 |
| XM_039801345.1 | False | 3179 | mRNA | 0.47 | 3 | 38811104 | 38814869 |
| XM_039801346.1 | False | 3178 | mRNA | 0.47 | 3 | 38811104 | 38814869 |
| XM_039801347.1 | False | 3172 | mRNA | 0.47 | 3 | 38811104 | 38814869 |
| XM_039801348.1 | False | 3287 | mRNA | 0.47 | 4 | 38811103 | 38814869 |
| XM_039801349.1 | False | 3140 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801350.1 | False | 3134 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801351.1 | False | 3134 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801352.1 | False | 3122 | mRNA | 0.47 | 6 | 38811104 | 38814869 |
| XM_039801353.1 | False | 3127 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801354.1 | False | 3153 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801355.1 | False | 3089 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801356.1 | False | 3097 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801357.1 | False | 3141 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801358.1 | False | 3141 | mRNA | 0.47 | 6 | 38811104 | 38814869 |
| XM_039801359.1 | False | 3205 | mRNA | 0.47 | 5 | 38811103 | 38814869 |
| XM_039801360.1 | False | 3199 | mRNA | 0.47 | 5 | 38811103 | 38814869 |
| XM_039801361.1 | False | 3058 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801362.1 | False | 3096 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801363.1 | False | 3096 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801364.1 | False | 3040 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801365.1 | False | 3078 | mRNA | 0.47 | 3 | 38811104 | 38814869 |
| XM_039801366.1 | False | 3002 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801367.1 | False | 3045 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801368.1 | False | 2989 | mRNA | 0.47 | 6 | 38811104 | 38814869 |
| XM_039801369.1 | False | 3027 | mRNA | 0.47 | 5 | 38811104 | 38814869 |
| XM_039801370.1 | False | 2951 | mRNA | 0.47 | 6 | 38811104 | 38814869 |
| XM_039801371.1 | False | 2968 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801372.1 | False | 2965 | mRNA | 0.47 | 3 | 38811104 | 38814869 |
| XM_039801373.1 | False | 3006 | mRNA | 0.47 | 3 | 38811104 | 38814869 |
| XM_039801374.1 | False | 2924 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801375.1 | False | 2882 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801376.1 | False | 3318 | mRNA | 0.47 | 4 | 38811098 | 38814870 |
| XM_039801377.1 | False | 2965 | mRNA | 0.47 | 5 | 38811103 | 38814869 |
| XM_039801378.1 | False | 2845 | mRNA | 0.47 | 5 | 38811103 | 38814869 |
| XM_039801379.1 | False | 2518 | mRNA | 0.47 | 2 | 38811104 | 38814869 |
| XM_039801380.1 | False | 2480 | mRNA | 0.47 | 3 | 38811104 | 38814869 |
| XM_039801381.1 | False | 2373 | mRNA | 0.47 | 4 | 38811104 | 38814869 |
| XM_039801382.1 | False | 1932 | mRNA | 0.47 | 2 | 38811104 | 38814869 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hcfc1b | NA | coding | upstream | 20481 | 38628960 ~ 38672644 (+) |
| LOC120559889 | LOC101079871,LOC107557552,LOC101066234,LOC106676044 | coding | upstream | 69186 | 38614203 ~ 38623939 (+) |
| lhfpl4b | LOC107099607,LOC103460219,LOC106530513 | coding | upstream | 195666 | 38488509 ~ 38497459 (+) |
| hdac6 | NA | coding | upstream | 219208 | 38441402 ~ 38473917 (+) |
| rtca | rtca,LOC102794842 | coding | upstream | 315471 | 38362482 ~ 38377654 (+) |
| otud5a | otud5 | coding | downstream | 317219 | 39132420 ~ 39186033 (+) |
| pim2 | pim2,LOC107397278 | coding | downstream | 374882 | 39190083 ~ 39200407 (+) |
| slc35a2 | NA | coding | downstream | 392529 | 39207730 ~ 39246036 (+) |
| bcap31 | bcap31,LOC102784580 | coding | downstream | 466808 | 39282009 ~ 39313729 (+) |
| kcnd1 | kcnd1 | coding | downstream | 602131 | 39417332 ~ 40418704 (+) |
| G56016 | NA | non-coding | upstream | 1563 | 38690816 ~ 38691562 (+) |
| G56020 | NA | non-coding | upstream | 12508 | 38679405 ~ 38680617 (+) |
| G56009 | NA | non-coding | upstream | 15410 | 38677325 ~ 38677715 (+) |
| G56008 | NA | non-coding | upstream | 33853 | 38644859 ~ 38659272 (+) |
| G56007 | NA | non-coding | upstream | 52019 | 38640675 ~ 38641106 (+) |
| G56014 | NA | non-coding | downstream | 1435 | 38816636 ~ 38817548 (+) |
| G56019 | NA | non-coding | downstream | 2005 | 38817206 ~ 38856871 (+) |
| G56029 | NA | non-coding | downstream | 6058 | 38821259 ~ 38821970 (+) |
| G56030 | NA | non-coding | downstream | 11392 | 38826593 ~ 38828139 (+) |
| G56036 | NA | non-coding | downstream | 93654 | 38908855 ~ 38909200 (+) |
| irak1 | NA | other | upstream | 89397 | 38571156 ~ 38603728 (+) |
| cxxc1a | LOC106910851,LOC103130742,LOC106940064,LOC107099357,LOC101080107,LOC106536805 | other | upstream | 253712 | 38412062 ~ 38439413 (+) |
| G55956 | NA | other | upstream | 255902 | 38436080 ~ 38437223 (+) |
| LOC120558454 | LOC104955491 | other | upstream | 300547 | 38380594 ~ 38392578 (+) |
| G55919 | NA | other | upstream | 456270 | 38111171 ~ 38236855 (+) |
| G56032 | NA | other | downstream | 44572 | 38859773 ~ 38895663 (+) |
| G56033 | NA | other | downstream | 59626 | 38874827 ~ 38899283 (+) |
| G56035 | NA | other | downstream | 63815 | 38879016 ~ 38880382 (+) |
| LOC120559065 | LOC107695300,LOC103365588,LOC101480057,LOC102306209,LOC102203592,LOC103460216,LOC101079199 | other | downstream | 157209 | 38972410 ~ 39083496 (+) |
| si:ch211-180f4.1 | LOC103365591,LOC102308931 | other | downstream | 281930 | 39097131 ~ 39156172 (+) |
