LOC120559729 (usp11)


Basic Information

Item Value
gene id LOC120559729
gene name usp11
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 44050743 ~ 44098847 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU77840
GCAAACACAGCTCCGTGTAGCTTCCCCGTTTATCAGTTGATCGATGCGGCGGTTGACTCGTTCCTTTGGTCTCCTGGCTCCGTTTAacgtttctaacagttgcgacATTTATGAGTGATTGATCGAAGCATCATGACGGCCGCGGAGCCTCCGGGCCTGGAGACCCAGCGGCGGGAGATCGAGTCACTGCTGCGGGAGAGCGAGCTCCGCGCGGGGGACAgttggtATGTGGTGGAGCGTCGCTGGTATGAACAGTGGAAGGAGTTTGTGGAGACCGGAGACCAGAACTCGTCGTCCTTCCCCGGTCAGATCGATAACACCGAGCTGTTTGAGGATCTGGACTCGTTCCACCTAAAGGGGCCTGGTGGAGAACGAGGA
>XM_039801695.1
CAGCCAGGACGTCGTCATCGGATTGTAAACCACTTCCTACTTCCGCAAACACAGCTCCGTGTAGCTTCCCCGTTTATCAGTTGATCGATGCGGCGGTTGACTCGTTCCTTTGGTCTCCTGGCTCCGTTTAacgtttctaacagttgcgacATTTATGAGTGATTGATCGAAGCATCATGACGGCCGCGGAGCCTCCGGGCCTGGAGACCCAGCGGCGGGAGATCGAGTCACTGCTGCGGGAGAGCGAGCTCCGCGCGGGGGACAgttggtATGTGGTGGAGCGTCGCTGGTATGAACAGTGGAAGGAGTTTGTGGAGACCGGAGACCAGAACTCGTCGTCCTTCCCCGGTCAGATCGATAACACCGAGCTGTTTGAGGATCTGGACTCGTTCCACCTAAAGGGCCTGGTGGAGAACGAGGACTTCATGTTGGTTCGGCTGAGGGCTGCACGACTGCTGGCCTGGATGCTGACACCCGATGGACTACCACCTGGTAGGCATAAGgtgGTGGACCTGCCCAGCACTCTGAAGGTGGAGGTGTACCCCATTGAgatcttcctctGTGTGCCCATTGAGatcttcctctgtctccatAGCAACATGGAGAACGTCATCACCGCAAAGTTCAGCCGCGCAGACAGCAtccACTCGATCCAGAGAGCGATGTGTGAGGCGTTCACGGTGCCTGCGGGCTCCGAGTGTCGCCTGTGGATGAAGAGTTCAGATAGCAGCTGCGAGCGTCTCAGGAACGTGCACGTGAGCGTGCTGGACGCCTGTCTGAGCTCCGGCATGacggTGATCATGGAGATGAGAAACGCAGACGGTACCTGGCCGAGCTCCAGACCTCAGATCATGAGGAACTCTGTGGAGGAGCAGGACTCGTACCGAGGCCAGCCGGGAGTCTGTGGCCTCACAAACCTGGGAAACACCTGCTTCATGAACTCTGCtctgcagTGTCTGAGTAATGCTCCTCCTCTGACGGAGTACTTCCTCCAGAGCTCCTACCTGGAGGAGCTGAACTTCTCCAACCCTCTGGGCATGAAGGGCGAGATCGCCGAGGCCTACGCTGACGTCATCAAGCAGATGTGGTCCGGGCGCCATTACTCCGTGGTGCCGCGCGTCTTCAAGACGAAGGTGGGCCACTTTGCGTCTCAGTTTCTGGGCTACCAGCAGCACGACAGCCAGGAGCTGCTGTCCTTCCTGCTGGACGGACTGCACGAAGACCTGAACAGAGTCAAAAACAAGGAGTACATCGAGCTGAGGGACGCAGAGGGACGCCCGGACCAGGAAGTGGCAGAGGAGGCGTGGCGTAACCACCGGCGCCGGAACGACTCGGTGATCGTCGACACGTTCCACGGCCTCTTCAAGTCCACGCTGGTCTGTCCCGAGTGCCACAAAGTGTCTGTGACCTTCGACCCCTTCTGCTACCTGAGCGTCCCGCTTCCTGTCAGCAAGGAGCGCGTCATGGAGGTCTTCTTCGTGTCTCTGGACCCGCACGCCAAACCTGCTCAGCATCGTGTCGTGGTTCCTAAAGCGGGAAAAGTGTTCgacctctgctctgctctggcAGAGATGACCAACGTACCCCCAACACAGatggTGGTAGCTGACGTGTTCAACCACCGCTTCTATAAGATCTACAGCGCTGATGAATCTCTGACCTGCATCCTGGACCGGGACGACATCTTTGTGTACGAGCTGAGTGTGTTGGAGGAGGCCGAGGAGCAGCCGGTGCTGCTGGCGCTCTACCTGAGGGAGCGCTCCCACTACCGGGACTACGGCTCGGGGGGCAGCTCCTACGGGACCTCGCTGTTCGGACACCCGCTGCTGCTCAGCGTGGAGCGCCGCCGCTGCAGCCGCCAGGCGCTCTACCAGCTGATCCTGCAGAGGCTGGcAGGAAGAGACGGACGATGGGGAGAAAGCCGGGCCGTCTCAgacagaaccagaaccagagccagagccagagcccGACTGCGGCGATGAATCGGCACAAAGCCAATCAAACGACAGCGCTGCTGCTGAGCCCCGCCCCAACGTTAACCACACAGAGCCCCTGCTGGACCACGGCGACACGGAGACCAACCGCCAGAGCGAGCCCAACGATAACGCGGCCAACGCTAACGCGGCCAACGCTAACGCCGTCAACGCTAACGCCGCCAACGCTAACGGCATGAATACCTGCGAGGCGTCGAGCCGGAGCAATGCCATGGCATCAGAGTCGCCGGCAGGTCACACCATAGAGGAAGAACGAGAGGAGGACAAGCAGGAGGAGGCGTGTTCCCCGAGCCCGCCGGCCAATCAGCAGCCagcgaggaggaagaggaggaagagtctGTTCACCATCCAGGCGGTCAACTCCAACGGGACGACTGAGAGGGGCACGGGGGAGGGGGGCAGCGCCGTGTCCTTCAGCTctcagCCTTACGTGGCCATCGACTGGGACCCCGACATGAAGAAGAGGTTCTACAATGAAAATGAAGCCGAGAAGTATGTGAAACACGGCAGCATGGAGGTTCCTCAGCAGCAGACGACGGTTCAGCTGCAGGAGTGTATCGAGCTGTTCACCACAGTGGAGACACTGGAGGAGGAGAACCcatggtaCTGTCCCGTGTGTAAGAAGCACCAGCTGGCCACCAAGAAGCTGGACCTGTGGTCTCTGCCGGAGGTTCTCATCATCCACCTCAAGAGATTCTCCTACACCAAGTTCACCAGAGAGAAGCTGGACAGCATCGTGGACTTCccttgcagagaCCTGGACTTCTCCGACTCCCTCCTGAGGAAAAGTCTGTCCAATGGGGAGCCTCCGAGCCGCTATGACCTCATCGCTGTGTCCAATCACTACGGAGGACTCAGAGACGGACATTataccAGCTATGCGAGGAACAAGGACAACGATCAGTGGTACTACTTTGACGACAGCAAGGTGACGTACGCCAGAGAGGACCAGATCGTGGTGAGTTTAACATCTTCAAACAGCTGAGACACAGaaattattatgtgtgtgtgtg

Function

symbol description
usp11 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human USP11 (ubiquitin specific peptidase 11).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 11

GO: NA

KEGG:

id description
K11835 USP4_11, UBP12; ubiquitin carboxyl-terminal hydrolase 4/11

RNA

RNA id representative length rna type GC content exon number start site end site
TU77840 False 378 TUCP 0.57 3 44050787 44054808
XM_039801695.1 True 3007 mRNA 0.59 23 44050743 44098847

Neighbor

gene id symbol gene type direction distance location
LOC120559476 LOC102210967,LOC103358300,LOC108245790,LOC107391506,LOC101163152 coding upstream 26793 44019004 ~ 44023950 (+)
LOC120559495 LOC103384526,LOC103358296,LOC101487991,LOC102794006 coding upstream 61540 43974024 ~ 43989203 (+)
LOC120559090 NA coding upstream 78590 43964473 ~ 43972153 (+)
ndnl2 LOC104951562 coding upstream 529906 43482922 ~ 43520837 (+)
LOC120559932 NA coding upstream 532669 43517950 ~ 43518074 (+)
G57897 NA non-coding upstream 6704 44043454 ~ 44044039 (+)
LOC120559478 NA non-coding upstream 23587 44024924 ~ 44027156 (+)
G57893 NA non-coding upstream 28463 44020613 ~ 44022280 (+)
G57892 NA non-coding upstream 30311 44020007 ~ 44020432 (+)
G57867 NA non-coding upstream 80393 43969951 ~ 43970350 (+)
G57886 LOC102210967,LOC101485965,LOC101163152 other upstream 23614 44018199 ~ 44027129 (+)
LOC120559493 NA other upstream 66231 43982002 ~ 43984512 (+)
LOC120559089 LOC102209886,LOC102308207,LOC103153489 other upstream 97233 43840847 ~ 43953510 (+)
zgc:113363 LOC103367255 other upstream 664752 43378346 ~ 43385991 (+)
LOC120558567 NA other upstream 1576802 42471896 ~ 42473941 (+)

Expression


Co-expression Network