her9 (hes4,LOC102778090)


Basic Information

Item Value
gene id her9
gene name hes4,LOC102778090
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23700576 ~ 23702429 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799240.1
CGTGTGTCGGTGGCAGAAGCGGTGACTCGCCCCGCACGGTGCAACGCACGCTCCTGTACTCACATGACAGCTCAGTGATAACAAGCGATATAACGCAAACTGATAGGTGGGACTGTCAGGCATCTCTTATATGTTCTGCAGTGGCTCAACGTGAACTTTCAACGATTTTATTTTTCCGGAGCTTCCAAAGAGGATTTACTACTTCACGCTTTACCTGGTTTGATCAACAATGCCAGCTGACACTATGGAAAAGCAGACGGCATCCCCTATTGCCGGTGCCCCTGCAAACGGAGCACACACACCGGACAAACCGAAAAATGCCAGCGAGCATAGAAAAtCATCCAAACCGATCATGGAAAAACGCCGGAGAGCAAGAATAAACGAAAGCCTTGGGCAGCTCAAGACTCTCATCCTGGACGCACTTAAAAAAGATAGCTCCAGACACTCCAAGTTGGAGAAAGCAGATATCCTGGAGATGACAGTGAAGCACTTGAGGAACCTGCAGCGTGTACAGATGAGCGCAGCACTTTCAGCAGATGCCACAGTCCTCAGCAAATACAGAGCTGGATTCAACGAGTGCATGAACGAGGTCACCCGCTTCTTGTCCACCTCCGAGGGGGTGAACACGGAGGTGAGGTCGAGGCTCCTCAGCCACCTGTCCAGCTGCATGGGCCAGATGATGTCCATGAACTACACGCAGCAGGCCGCGTCCCAACAGGCGCACCTGGCTCAACCTCTCCATGTGCAGCTCCCATCCACTCTACCTATCAACTCTGCTGCTATGGGCTCCAAACTCAGTCCTGCCGAGGCCGTCTCCCCCAAGGTATTTGGTGGGTTTCAGCTGGTGCCCGCAACCGATGGACAGTTCGCGTTTTTGATCCCCAACCCGGCCTTCGCCTCCACCACAGGCCCTGTTATACCCCTTTACGCAAACGCAGGAGTGCCTGTTGCGGTCAACGCCAGTCCGGTGCACGGAAGCTCGGCACCGACTGCAGCTTCTCCAGTCCATGGCATGACGTCCTTCTCCGGGGGGTCCCAGGCGGTCAGCCCGGTCGGAGTCAGCACCGGTTCGGAGGGCAACGAGCCTGTGTGGAGGCCTTGGTAGCGCAAGGGACAAGAGACCCATAACCAGACTGCAGTACTTTTccattttagacatttaacTGACTGCACAGACAACTGTTGCGGGGGTTAAACCTGTGACTTTTTCGCTATGGGACGGTAACTCTAACCACTTAATGCCCCCTATAGTTCTCATTGTTTCGTTTTATGGAACAAGAGTTGCCTTACATGgcactttcttttattgtctgATTCCAACATTTGGATGTCGGTGATAAATCTGCTGTACATGTGGAAGATTTATAGGAACGTTTTTGTTATGAAGTACTTTTTATGAAAaggttttagttttgtacaGATGTGTTATTGATTGTTATACCAAAgctgtgttttatattttgttgttgttttgtgttgaaaagaaaaactgaagttGGGTGATGGCCCGTTGTTTTAATAAATTACTTTTCAGAAATGAA
>XM_039799242.1
CGTGTGTCGGTGGCAGAAGCGGTGACTCGCCCCGCACGGTGCAACGCACGCTCCTGTACTCACATGACAGCTCAGTGATAACAAGCGATATAACGCAAACTGATAGGTGGGACTGTCAGGCATCTCTTATATGTTCTGCAGTGGCTCAACGTGAACTTTCAACGATTTTATTTTTCCGGAGCTTCCAAAGAGGATTTACTACTTCACGCTTTACCTGGTTTGATCAACAATGCCAGCTGACACTATGGAAAAGCAGACGGCATCCCCTATTGCCGGTGCCCCTGCAAACGGAGCACACACACCGGACAAACCGAAAAATGCCAGCGAGCATAGAAAAtCATCCAAACCGATCATGGAAAAACGCCGGAGAGCAAGAATAAACGAAAGCCTTGGGCAGCTCAAGACTCTCATCCTGGACGCACTTAAAAAAGATAGCTCCAGACACTCCAAGTTGGAGAAAGCAGATATCCTGGAGATGACAGTGAAGCACTTGAGGAACCTGCAGCGTGTACAGATGAGCGCACTTTCAGCAGATGCCACAGTCCTCAGCAAATACAGAGCTGGATTCAACGAGTGCATGAACGAGGTCACCCGCTTCTTGTCCACCTCCGAGGGGGTGAACACGGAGGTGAGGTCGAGGCTCCTCAGCCACCTGTCCAGCTGCATGGGCCAGATGATGTCCATGAACTACACGCAGCAGGCCGCGTCCCAACAGGCGCACCTGGCTCAACCTCTCCATGTGCAGCTCCCATCCACTCTACCTATCAACTCTGCTGCTATGGGCTCCAAACTCAGTCCTGCCGAGGCCGTCTCCCCCAAGGTATTTGGTGGGTTTCAGCTGGTGCCCGCAACCGATGGACAGTTCGCGTTTTTGATCCCCAACCCGGCCTTCGCCTCCACCACAGGCCCTGTTATACCCCTTTACGCAAACGCAGGAGTGCCTGTTGCGGTCAACGCCAGTCCGGTGCACGGAAGCTCGGCACCGACTGCAGCTTCTCCAGTCCATGGCATGACGTCCTTCTCCGGGGGGTCCCAGGCGGTCAGCCCGGTCGGAGTCAGCACCGGTTCGGAGGGCAACGAGCCTGTGTGGAGGCCTTGGTAGCGCAAGGGACAAGAGACCCATAACCAGACTGCAGTACTTTTccattttagacatttaacTGACTGCACAGACAACTGTTGCGGGGGTTAAACCTGTGACTTTTTCGCTATGGGACGGTAACTCTAACCACTTAATGCCCCCTATAGTTCTCATTGTTTCGTTTTATGGAACAAGAGTTGCCTTACATGgcactttcttttattgtctgATTCCAACATTTGGATGTCGGTGATAAATCTGCTGTACATGTGGAAGATTTATAGGAACGTTTTTGTTATGAAGTACTTTTTATGAAAaggttttagttttgtacaGATGTGTTATTGATTGTTATACCAAAgctgtgttttatattttgttgttgttttgtgttgaaaagaaaaactgaagttGGGTGATGGCCCGTTGTTTTAATAAATTACTTTTCAGAAATGAA

Function

symbol description
hes4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
transcription factor HES-4-B-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09090 HESN; hairy and enhancer of split, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799240.1 True 1541 mRNA 0.50 4 23700576 23702429
XM_039799242.1 False 1538 mRNA 0.50 4 23700576 23702429

Neighbor

gene id symbol gene type direction distance location
perm1 LOC103364029 coding downstream 60178 23629441 ~ 23640398 (-)
noc2l noc2l coding downstream 112324 23558897 ~ 23588252 (-)
ca6 ca6,LOC102780476 coding downstream 400886 23293203 ~ 23299690 (-)
LOC120559643 NA coding downstream 439191 23259471 ~ 23261385 (-)
spsb1 spsb1 coding downstream 445985 23244807 ~ 23254591 (-)
lzic lzic coding upstream 189370 23891799 ~ 23894184 (-)
tardbpa tardbp,LOC106534252 coding upstream 305572 24008001 ~ 24021872 (-)
pex14 pex14 coding upstream 563745 24266174 ~ 24319003 (-)
cort cort,LOC101173302,LOC102226263,LOC100698045,LOC103363980 coding upstream 654359 24356788 ~ 24358011 (-)
srm srm coding upstream 658523 24360952 ~ 24365511 (-)
G52544 NA non-coding downstream 251951 23448086 ~ 23448625 (-)
G52477 NA non-coding downstream 463117 23236683 ~ 23237459 (-)
G52474 NA non-coding downstream 486639 23207837 ~ 23213937 (-)
G52471 NA non-coding downstream 495285 23204474 ~ 23205291 (-)
G52453 NA non-coding downstream 505475 23194241 ~ 23195101 (-)
G52574 NA non-coding upstream 299 23702728 ~ 23702955 (-)
G52630 NA non-coding upstream 87019 23789448 ~ 23791103 (-)
G52633 NA non-coding upstream 106242 23808671 ~ 23809079 (-)
G52634 NA non-coding upstream 111700 23814129 ~ 23814406 (-)
G52635 NA non-coding upstream 135265 23837694 ~ 23837956 (-)
G52501 eno1,LOC104965722,LOC103151087 other downstream 380892 23308500 ~ 23319684 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other downstream 481676 23214098 ~ 23218900 (-)
G52226 NA other downstream 1169868 22529606 ~ 22530708 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other downstream 1471155 22223149 ~ 22229421 (-)
si:dkey-151g10.3 wnk3 other downstream 1685533 21970052 ~ 22015043 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other upstream 632720 24335149 ~ 24339456 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other upstream 1048002 24750431 ~ 24785005 (-)
acot7 acot7,LOC102782704 other upstream 2208326 25910755 ~ 25972322 (-)
emc1 NA other upstream 2434569 26136998 ~ 26147245 (-)
G53196 NA other upstream 2510564 26212993 ~ 26214882 (-)

Expression


Co-expression Network