LOC120558333


Basic Information

Item Value
gene id LOC120558333
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12224304 ~ 12230288 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799269.1
ATGAACCGACCAGGTTTTGGTGGGGCTTCACCATCCATTAGCTTCTCCACGGGGATAACAGAAAATGGATGCTCAGCCTCAGATCTAACCGAGGAGGACATAGACAATCTACGTTTTGAACTTGAAAAGGTGGAGGAGGAAATTCAGACCTTGCGGCAGGTGCTTTTGGTCAGAGAAAAATATGCCGCAGACATCAAGAGGCAGCTTGGTATGAGCCCGCTCAGTAACCTCAAACAGAACCTGTCCAAAGGCTGGCAAGACGTCCAGATCTCAGCCCCATATCTCAGAGCCTCTGCCGCTTTGGAGGACATCAGTCACTCCAACATATATATGAGGACACGGGAGGGTCTCTCTCATGCAGGCCAGGTGACATCTTCTGCAATGTCCAATATGGGCGTGACCATCACCAGGAGACTGTCACAGATGAGAGCTCTGCCTCTTCCGAGCCCACCAcgCACCCTGAGCCACACCATGAGTGTGCCGACTATGAGACATTCCTCTACGTTCAAGTCTTTTGAGGAAATGGTCGGAAATGTGAAGGACAAGGTGAGTGGCAGTCGGACAATGGATAATGGAAACACCTCTGGGTTTGAAAGACGATCCTCACGCACATGAGAAAGAACCTTcccacatataaaaaaaatatgtttttcataCCTTGTAAAGTTATGAGAGAATGTTAATTTACTCACTTGTCTGTGTGAATTTGTTCACTATTATGTTCTATTGTTGTATTAATACAATATGACTAATATAATCCATTAAATTTGCAATGGgaaattattttaaacttaaatgTAAAATAGTCTTTTAATATGTgaatatgtaatatttctgcATGTTGGATAAATGCAATGTTAGGAGTTGTGTATTTGGATATATGAGCGCAGTAAACCCATTATCTTAAAAAAGTTTATTTACTTGCAATAGGCATTCATTGGCATTAATTGTGACATTTACAAAACTGAATATCACAAACAAGAAGTATTTTTGTACTTTACAATTTTTCAATTAAAGTCAATTGAATAGTG

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799269.1 True 1031 mRNA 0.41 9 12224304 12230288

Neighbor

gene id symbol gene type direction distance location
LOC120559362 LOC102786474,LOC103354471 coding downstream 105158 12103891 ~ 12119146 (-)
LOC120559249 ptpn1 coding downstream 224859 11986410 ~ 11999445 (-)
LOC120559253 ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298 coding downstream 266913 11953175 ~ 11957391 (-)
slc52a3 slc52a3 coding downstream 278794 11940260 ~ 11945510 (-)
scrt2 scrt2,LOC108249568,LOC102228875,LOC107391295 coding downstream 316691 11898818 ~ 11907613 (-)
dnajc5aa dnajc5,LOC104933326,LOC101169856,LOC107090698 coding upstream 2817 12233105 ~ 12237737 (-)
ythdf1 LOC104938233,LOC103354577,LOC106952594,LOC100697389,LOC102786472 coding upstream 29709 12259997 ~ 12270531 (-)
nkain5 LOC103354565,LOC101477820 coding upstream 41199 12271487 ~ 12280037 (-)
uckl1a LOC103355333,LOC101079427,LOC103139074,LOC101476695,LOC102196708,LOC102308715,LOC103385400,LOC101173865 coding upstream 75970 12306258 ~ 12323341 (-)
samd10a LOC105935172,LOC103139076,LOC103354595,LOC107095944 coding upstream 93197 12323485 ~ 12331992 (-)
G49118 NA non-coding downstream 10763 12211743 ~ 12213541 (-)
G49112 NA non-coding downstream 77271 12146728 ~ 12147033 (-)
G49092 NA non-coding downstream 82890 12140935 ~ 12141414 (-)
G49084 NA non-coding downstream 102754 12119658 ~ 12121550 (-)
G49024 NA non-coding downstream 161049 12003267 ~ 12063255 (-)
G49115 NA non-coding upstream 12914 12243202 ~ 12244833 (-)
LOC120558423 NA non-coding upstream 121139 12351427 ~ 12368708 (-)
G49178 NA non-coding upstream 141533 12371821 ~ 12373308 (-)
G49177 LOC108232018 non-coding upstream 145049 12375337 ~ 12375562 (-)
G49179 NA non-coding upstream 146000 12376288 ~ 12376976 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 1276 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 55095 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 95879 12126886 ~ 12128425 (-)
peds1 LOC104919928,LOC103354371 other downstream 245269 11959379 ~ 11979035 (-)
srxn1 srxn1 other downstream 333165 11885965 ~ 11891139 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other upstream 158693 12388981 ~ 12391677 (-)
prickle3 prickle3,LOC102790576 other upstream 185315 12415603 ~ 12439909 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 694170 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 1020698 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 1078072 13308360 ~ 13312729 (-)

Expression


Co-expression Network