lzic (lzic)


Basic Information

Item Value
gene id lzic
gene name lzic
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23891799 ~ 23894184 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799308.1
CACCCACACTCCTGAGCTAGCTACGTCAGAGAAGCTACGTTCACAATCACATATCCACAGACCAAGCGCCCATGCATGTATTAACGCAAGCGCCTCGACAAACACTAAATATTTTGTAACCGTTCTTGAAGGTAGTAATTTTTCCGAGAAGTTCCAATTCAATGATTCAGTTAATTTTATTGTATATTCGTCAAGCTGGTGCAACTATTCAACTCATTGCACGACTGATTTAACGTTACATCTGTTGACAAAACGAGTCCCGGGTTGGGAATAAGATTTTAACAAAGGATGGCTTCTCGCGGGAAATCAGAAACTGGAAAATTGAGGCAAAATATGGAAGAGCAACTTGACAGACTGATGCAGCAGCTTCAGGATCTGGAGGAATGCAGAGAAGAACTGGATGAGGAAGAGTATGAGGAGACAAAAAAGGAAACCTTGGAACAGTTGAGTGAATTCAATGACTCTCTGAAGAAGATCATGACAGGAGACATGACCCTTGTGGATGAACTCAGTGGAATGCAGCTGGCAATCCAGGCTGCCATCAGCCAAGCTTTCAAAACCCCAGAGGTGATCCGACTTTTTGCTAAGAAGCAGCCAGGACAGCTGAGAACAAGACTAGCAGAGATGGACCGAGATGTCATGGTGGGGAAATTGTCGCGAGATGTGTACACgcagcagaaaatggaaatccTCACAGCCTTGAGAAAACTTGGAGAGACGCTCACTTTGGAGGATGAGACTTTTCTCACTGAAAATGCTACAGCTACTCTGAACCAGTTTGAAAAAGTGACTGCAAACTTAGGCTCTGAAGACAAAATTATGGCTTTAGCTAGCTCTGGTGTGAAAACCAAGGCATAGTAATTctacaaaatgttaattttaacCCTGTGTCTTTATTACCAAGAATGACGTGCCAATTGATCATTGATTTTGTAAATAGCCAGTGCTCTATGTTTTGCTGTAGATgctaacactttttaacagtatTGTTTTATACACCTGCACTTTTGTAAATGTCTATTTGTCCAGATGCGTGTAAAATTATATTATAGGTACGAGCATGTGATTTGTGGAATATGAAGACATGTACGTGAATGTAAAAGATGGTCCAGGCAGTTCAAGAGAAATACTCTGTTGTGATTTGGGCTGTATTTCTTATTGGGTTGCTGTGTCTCTCTTGCATTGTTGTTTTAAAGATTGTTGATTTTCTGTATGAGTGCTGCAAATATTcaagatttattttaaataaactgttccGTTTACA
>XM_039799309.1
CACCCACACTCCTGAGCTAGCTACGTCAGAGAAGCTACGTTCACAATCACATATCCACAGACCAAGCGCCCATGCATGTATTAACGCAAGCGCCTCGACAAACACTAAATATTTTGTAACCGTTCTTGAAGGTTGGGAATAAGATTTTAACAAAGGATGGCTTCTCGCGGGAAATCAGAAACTGGAAAATTGAGGCAAAATATGGAAGAGCAACTTGACAGACTGATGCAGCAGCTTCAGGATCTGGAGGAATGCAGAGAAGAACTGGATGAGGAAGAGTATGAGGAGACAAAAAAGGAAACCTTGGAACAGTTGAGTGAATTCAATGACTCTCTGAAGAAGATCATGACAGGAGACATGACCCTTGTGGATGAACTCAGTGGAATGCAGCTGGCAATCCAGGCTGCCATCAGCCAAGCTTTCAAAACCCCAGAGGTGATCCGACTTTTTGCTAAGAAGCAGCCAGGACAGCTGAGAACAAGACTAGCAGAGATGGACCGAGATGTCATGGTGGGGAAATTGTCGCGAGATGTGTACACgcagcagaaaatggaaatccTCACAGCCTTGAGAAAACTTGGAGAGACGCTCACTTTGGAGGATGAGACTTTTCTCACTGAAAATGCTACAGCTACTCTGAACCAGTTTGAAAAAGTGACTGCAAACTTAGGCTCTGAAGACAAAATTATGGCTTTAGCTAGCTCTGGTGTGAAAACCAAGGCATAGTAATTctacaaaatgttaattttaacCCTGTGTCTTTATTACCAAGAATGACGTGCCAATTGATCATTGATTTTGTAAATAGCCAGTGCTCTATGTTTTGCTGTAGATgctaacactttttaacagtatTGTTTTATACACCTGCACTTTTGTAAATGTCTATTTGTCCAGATGCGTGTAAAATTATATTATAGGTACGAGCATGTGATTTGTGGAATATGAAGACATGTACGTGAATGTAAAAGATGGTCCAGGCAGTTCAAGAGAAATACTCTGTTGTGATTTGGGCTGTATTTCTTATTGGGTTGCTGTGTCTCTCTTGCATTGTTGTTTTAAAGATTGTTGATTTTCTGTATGAGTGCTGCAAATATTcaagatttattttaaataaactgttccGTTTACA

Function

symbol description
lzic Predicted to enable beta-catenin binding activity. Acts upstream of or within central nervous system development. Is expressed in brain; head; and notochord. Orthologous to human LZIC (leucine zipper and CTNNBIP1 domain containing).

NR:

description
protein LZIC isoform X1

GO:

id name namespace
GO:0007417 central nervous system development biological_process
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799308.1 True 1264 mRNA 0.40 7 23891799 23894184
XM_039799309.1 False 1132 mRNA 0.41 7 23891799 23894184

Neighbor

gene id symbol gene type direction distance location
her9 hes4,LOC102778090 coding downstream 189370 23700576 ~ 23702429 (-)
perm1 LOC103364029 coding downstream 251401 23629441 ~ 23640398 (-)
noc2l noc2l coding downstream 303547 23558897 ~ 23588252 (-)
ca6 ca6,LOC102780476 coding downstream 592109 23293203 ~ 23299690 (-)
LOC120559643 NA coding downstream 630414 23259471 ~ 23261385 (-)
tardbpa tardbp,LOC106534252 coding upstream 113817 24008001 ~ 24021872 (-)
pex14 pex14 coding upstream 371990 24266174 ~ 24319003 (-)
cort cort,LOC101173302,LOC102226263,LOC100698045,LOC103363980 coding upstream 462604 24356788 ~ 24358011 (-)
srm srm coding upstream 466768 24360952 ~ 24365511 (-)
exosc10 exosc10,LOC102796841 coding upstream 476234 24370418 ~ 24384608 (-)
G52638 clstn1,LOC102777235 non-coding downstream 816 23860753 ~ 23890983 (-)
G52635 NA non-coding downstream 53843 23837694 ~ 23837956 (-)
G52634 NA non-coding downstream 77393 23814129 ~ 23814406 (-)
G52633 NA non-coding downstream 82720 23808671 ~ 23809079 (-)
G52630 NA non-coding downstream 100696 23789448 ~ 23791103 (-)
G52654 ube4b non-coding upstream 12727 23906911 ~ 23908919 (-)
G52663 ube4b non-coding upstream 28038 23922222 ~ 23922989 (-)
G52664 NA non-coding upstream 29024 23923208 ~ 23923669 (-)
G52677 kif1b non-coding upstream 80659 23974843 ~ 23975520 (-)
G52681 NA non-coding upstream 86564 23980748 ~ 24002023 (-)
G52501 eno1,LOC104965722,LOC103151087 other downstream 572115 23308500 ~ 23319684 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other downstream 672899 23214098 ~ 23218900 (-)
G52226 NA other downstream 1361091 22529606 ~ 22530708 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other downstream 1662378 22223149 ~ 22229421 (-)
si:dkey-151g10.3 wnk3 other downstream 1876756 21970052 ~ 22015043 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other upstream 440965 24335149 ~ 24339456 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other upstream 856247 24750431 ~ 24785005 (-)
acot7 acot7,LOC102782704 other upstream 2016571 25910755 ~ 25972322 (-)
emc1 NA other upstream 2242814 26136998 ~ 26147245 (-)
G53196 NA other upstream 2318809 26212993 ~ 26214882 (-)

Expression


Co-expression Network