hoxc13a (hoxc13)


Basic Information

Item Value
gene id hoxc13a
gene name hoxc13
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20906056 ~ 20910417 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799365.1
AGGACTTGTTAGCGTATCACGTGCCAGATTCTTAATGAAGTGGACACACGAGGGTCTCGAGTGCGCATGCGCTTGGTGTAAAATGTAGTTGGAAATGAGGTGTCCGTCTTGGAGTAGTCGACTTTTAAAAAGCATCGGCAGCCCCTGATATGACGACTTCGCTGGTCCTGCATCCACGCTGGGCGGACACCTTGATGTACGTTTATGAAAAAAGCCCGAATGAAAACAACCAGAATAAAAGCCAAACAATGGAGGGACTGAGCGGTAATTGCCCTGCGACCCACTGCAGGGACCTGATGTCGCACCCCGCGCTGGGACGACATTCTGGCACCATAGCGACCCACCAGGGCTCCGTCTACTCGGATATTTCTTCTCCAGACACCGGCCGGCAGTGTCCCGCTCCACAAACATCATCCAGTGCATCTTTGAGCTACGGTTATCCATTTGGAAACCCATATTACGGCTGTAGATTGTCTCATTCGCACAACGTGAACTTGCAGCAGAAGCCTTGCTCGTACCATCCCGCAGAGAAATATGCCGAGCCCAGCACAGCGCTGCCCACGGAAGAACTGTCTACCAGGGCGAAGGAGTTTGCCTTCTACCCGAGTTTCGCCAGCTCATATCAGGCTGTCCCTGGATATCTCGATGTGTCGGTGGTGCCTAGTATCAGTGCCCATCCCGAACCGAGGCACGACGCCTTGATCCCCATGGAGGGCTACCAGCACTGGGCTCTCTCCAACGGCTGGGATGGGCAGGTGTACTGCTCCAAAGAGCAAACACAGTCAACTCATCTCTGGAAATCACCTTTTCCAGATGTTGTGCCATTACAGCCTGAGGTCAGCAGTTACCGACGTGGGCGTAAAAAACGTGTCCCTTACACCAAGATCCAGCTGAAGGAGCTGGAGAAAGAGTATGCAGCCAGCAAGTTCATCACCAAAGACAAGAGAAGACGCATCTCGGCCGCTACCAATCTCTCAGAGCGTCAAGTCACCATCTGGTTTCAAAACCGGCGAGTCAAGGAGAAGAAATTTGTCAGTAAATCCAAGAGTAATCACATGCACACCACTTGAGAAGATCAACGACCTCTTTGAAACTACAACTCATACCTTCCAACACATCATGCCATATATTTACCTCTTGCATCGAAAATCGTggctgaaaaacattttggcagtgtttttttttctttctttttttttttatttaacttccaTCATCTCCATCGACCATGCCACCACGCCCCCTGTTTTCAAGTTAGAGCTAATGCTCtaaaaactgtgaaaatatTGAAAGTTCACttcacatttgttttatatgaatgtacatatataaatatataatatttaaaacGATATCTGTATTTCAAAGACaagtgttgtgtttttcttttagtgtGTTCAAGCCAAATCTCAAAAGGACTGATGGCATTTCTTAAACTTACAATGAGCAGATCAAAACAAAGGAAACAGTTTGATGTCATTTTAGAAAGATAATCGCCACATGGACATCAGTTGTGGCGTAATGACACGTTGAACTTGAGATTTCTTCAAGAAAAAAGCTCACAAAGGACTTTCGAAAGAAagaatgattttcttttttaaatattccttCTGAATTTCAAAAGCTTTGTTCCTCTGTGTGGGAAATGTTCTCTTAAACCTGGGGTAAAACAAAGGCTCGTATGTTGTTAATCTGTATAGTGCAAtgcctttttatttaattcatattATCTAGTATGGCGGAACTGTAAACTGGAATATCCCAAGACCTGTATGTTTTCCTTTGTCAGTGAAGGATTCTGTCATGCAACTGGAATGATTGTAAACCATTAAAAGTCAGTGAGTATTACACATAAATGCACAatcgttttattttattttttgtctttgttagtGTAGCATTGCAGCTGATCACACGCCTTGTGAAGCCTGTATTTTCTACTTTGGTGCGGTATGTGAACTGTATTGTGGTGTTGAATTACGTACTGGAAACGTGtttcataaataaatgatgatTATGAAAACGCTTAAA

Function

symbol description
hoxc13 Enables DNA-binding transcription factor activity; DNA-binding transcription factor binding activity; and transcription cis-regulatory region binding activity. Involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in ectodermal dysplasia 9.

NR:

description
homeobox protein Hox-C13a

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09298 HOX_13; homeobox protein HoxA/C/D13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799365.1 True 2031 mRNA 0.44 2 20906056 20910417

Neighbor

gene id symbol gene type direction distance location
hoxc12a hoxc12,LOC108235205,LOC107390914 coding downstream 6921 20895268 ~ 20899135 (-)
hoxc11a hoxc11 coding downstream 19804 20882028 ~ 20886252 (-)
hoxc9a hoxc9 coding downstream 41733 20861762 ~ 20864323 (-)
hoxc8a hoxc8 coding downstream 47820 20854604 ~ 20858236 (-)
hoxc6a hoxc6 coding downstream 60292 20843693 ~ 20845764 (-)
rarga rarg coding upstream 53329 20963746 ~ 21006268 (-)
rbms2b LOC104956888,LOC103362050,LOC102783848,LOC102303282 coding upstream 138427 21048844 ~ 21066026 (-)
LOC120559628 LOC108235222,LOC103385139,LOC106524753,LOC103362054 coding upstream 229486 21139903 ~ 21141062 (-)
pa2g4b LOC104932430,LOC103356918,LOC101170587,LOC101465390 coding upstream 313662 21224079 ~ 21233429 (-)
erbb3b LOC103356917 coding upstream 323849 21234266 ~ 21248157 (-)
G51577 NA non-coding downstream 180155 20725627 ~ 20725901 (-)
G51574 NA non-coding downstream 183058 20722650 ~ 20722998 (-)
LOC120558476 NA non-coding downstream 242479 20662353 ~ 20663577 (-)
G51544 NA non-coding downstream 464249 20441496 ~ 20441807 (-)
LOC120558923 NA non-coding downstream 523181 20367986 ~ 20382875 (-)
G51614 NA non-coding upstream 114716 21025133 ~ 21031699 (-)
G51620 NA non-coding upstream 126665 21037082 ~ 21041944 (-)
G51606 NA non-coding upstream 135632 21046049 ~ 21048786 (-)
G51673 NA non-coding upstream 256305 21166722 ~ 21167748 (-)
LOC120559347 NA non-coding upstream 309550 21219967 ~ 21222632 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 1090738 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 1828275 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 2019161 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 2804484 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 3010974 17835080 ~ 17895082 (-)
fmnl3 fmnl3 other upstream 257487 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 288923 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 1059635 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 1312732 22223149 ~ 22229421 (-)
G52226 NA other upstream 1619189 22529606 ~ 22530708 (-)

Expression


Co-expression Network