LOC120558390


Basic Information

Item Value
gene id LOC120558390
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20817418 ~ 20820599 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799366.1
TCCAAGTGCTCTTCCCTGCATGCTTTTATACATTCAGGTTAATTGTGATCGGATATTAGACAGACAGAAGTCCTAGTATTTACTACTGCTGAGGGATTCCTGGTTTGATGAGCTGGGTCCATGCACCCCCAGCAGTCTGCCCTCCCACTGCAGCTGCATGGCAACAGTTTTGCTATGAGCTCTGGACAAGTGCCAAAACTAAGCGCGGGATACAAtgaagaaggaggaggtggaggccAAGAAGCTGAACTTAATCAGCAAAACACGACTTCCTCTGCTCATGTCAGTTGCAGGTTGAACCCAGGTGAACAGTGTCAGAGCCCACTGGAGCCTCTGGTTCACTGCCATGCCAAGGGCAAGCTGGACACCAAGAGCAGGAGCTGCAGTCTACTCTCCATCTGCGGCTCAGGAGTGATCTTTCCCTGGATGAATCAACGGACAACTGACTCTGAACCATCTGTCAGCGGTGGTGTGGCGGTGGGTCTGTCAGGCAGAGGAAGACTCAGTGTCAGGAGGGAGAGAACAGCCTTCACCAACAGCCAGCTGCTGGAGCTGGAGAAGGAGTTCCACTTCAGCCCTTACCTGTGTCGTCCTCGGAGGCTGGAGATGGCGGCCGGGCTGCAGCTCACAGATCGGCAGGTCAAAATTTGGTTTCAGAACCGCAGGATGAGGTACAAGAAGGAGCACAAGAAGGTGGCAAGTTTGTCCCAGTGGTCTCCCTGCGACCCTTCCCTCAGCTCGAGCTCATGTGCGGACCACCTGAGGTTTTCAGGTGCATGTGTTGTTCAAACGTCCTCCTCAGAGCTGCACTTCATGGATTATGCTCCTATGTCCTCTCTTTTTGGTGCTCATAGTGACGCCAGCAGTGGTCAGTGTATTCAACCCCCAGACCTGCCCCATCTGAGCTGCATACTTCCATCTGTTGCAAATGGTCCTCCGCCTTCCTGTACGGGCGCAGATAGTCATCACCATGCTGGCATTTCAAACTGGCCCTAGGGCCCCATAATGGCGATCCCTCCAGTGCTCATCAAAATCTCAATGATACATTCACTTTCACTTACTTATGAAAGACTGGAGGATGTCTTATTAGCCTCCCTGGGTTGAAATCCCCTTAATACACCCGTTCACCATTcatgaaacattttaattaaactatATGAACATATCTTAATTAAAGGAGAGCTACAGTGTTATCATTTGTGTTTCTCAGGCGCGGTGACTGAAAACTGCAGGTCAAACTTGCTGCTCGTATTGTACGCACACAGCATGCACAAGACATCCGAGCGATTAATAATTACATGTTTCGCTGTAATTTTGTGGCAGTTTGCATTTATATTGTCGTTGCATGTATAATGCATGTGGGATTCATGTTATAAGTGATTTTTCTATTTCCCTATGTTGTCAGACAATAGCCAAGTGGTTTTCCTATTTTCTAAGTGTCACATTTGGCCCTCCTTTTTCATTATCTACTGTAAATAACAGGtcatttgtgtaaaatgttttaaCTGTGAAATGGGCAGAATAATGTTCATATCGAATGAtgttatatttttgttaaagcCATTAAAGGAGTTTGATACGGTTCTTGATTAATTGAGATGTCATACTGAACATGCTTAATAAATGCATT

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799366.1 True 1630 mRNA 0.47 2 20817418 20820599

Neighbor

gene id symbol gene type direction distance location
hoxc1a LOC104956907 coding downstream 8884 20800099 ~ 20808534 (-)
hnrnpa1b hnrnpa1 coding downstream 62888 20751583 ~ 20754530 (-)
copz1 copz1 coding downstream 76459 20730106 ~ 20740959 (-)
LOC120558914 LOC103360972,LOC103385138,LOC106524412,LOC101071942,LOC107092037 coding downstream 385687 20409537 ~ 20431731 (-)
fkbpl NA coding downstream 489079 20325451 ~ 20328339 (-)
hoxc4a hoxc4 coding upstream 8128 20828727 ~ 20833997 (-)
hoxc5a hoxc5,LOC100534464,LOC101471491 coding upstream 19352 20839951 ~ 20842893 (-)
hoxc6a hoxc6 coding upstream 23094 20843693 ~ 20845764 (-)
hoxc8a hoxc8 coding upstream 34005 20854604 ~ 20858236 (-)
hoxc9a hoxc9 coding upstream 41163 20861762 ~ 20864323 (-)
G51577 NA non-coding downstream 91517 20725627 ~ 20725901 (-)
G51574 NA non-coding downstream 94420 20722650 ~ 20722998 (-)
LOC120558476 NA non-coding downstream 153841 20662353 ~ 20663577 (-)
G51544 NA non-coding downstream 375611 20441496 ~ 20441807 (-)
LOC120558923 NA non-coding downstream 434543 20367986 ~ 20382875 (-)
G51589 hoxc10,hoxc8,hoxc11,LOC102193660,LOC100690382,LOC101470732,LOC103467376,LOC102786831,LOC106947643,LOC106565461,LOC105016991,LOC103385114 non-coding upstream 41627 20862226 ~ 20952782 (-)
G51614 NA non-coding upstream 204534 21025133 ~ 21031699 (-)
G51620 NA non-coding upstream 216483 21037082 ~ 21041944 (-)
G51606 NA non-coding upstream 225450 21046049 ~ 21048786 (-)
G51673 NA non-coding upstream 346123 21166722 ~ 21167748 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 1002100 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 1739637 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 1930523 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 2715846 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 2922336 17835080 ~ 17895082 (-)
fmnl3 fmnl3 other upstream 347305 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 378741 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 1149453 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 1402550 22223149 ~ 22229421 (-)
G52226 NA other upstream 1709007 22529606 ~ 22530708 (-)

Expression


Co-expression Network