hoxc4a (hoxc4)


Basic Information

Item Value
gene id hoxc4a
gene name hoxc4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20828727 ~ 20833997 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799368.1
TACCACGCCAGCCAATGGATTCTTctgcttctgctcctcttcacgTCTCTTTGgcttcctttttttcctccctgcTATTGAATATACAAGCAGTGATACACATACAGCCTGCATCCACACTAGTAATGCAATAACATTGTCACAAAGTGTATTCATAGTCCAGACAGCCGTAGATTGTGTAGGTAGGCCACAGAGCGCAAACCCATGTGTGCAGTATGCGGCTACTACTGTGACAGACCCTGTAAAACACGTTAGGAATCAGGGGTCGTTTAAAAGTGACTGATTTACGGCTTTTATTGCTCTATTAAACGCCTCTAACATCCTCGCCGGGGATAATAGAAATGTCGTGCGTATTCTGTACAAACAGGACAGCCAGAAATGCCATTTCACGTCTCGCTTTTAACCATATTATGTAATTATTGCTGTGAAAATAGATACACCCGTTATCTTGCAATTTGCTGCTTTTGCCCATATATTGACTTGTGTGCTACTTCTGCTCAGACTTAATGTTTTGGAgcctattactattattattattgttattgcttttatcattattgttattattattaataatattattatagtattttCCTACTTGTAATTTTGGCTGTTGGTGACCCCATAACTATCATAACAATAAAAAGGAAGAATaaataatactgtatatactgtataatgtggATGTTGTTGGGAGGCTGAGAAGCTATTAGGGAGTTAACCTCTCGCTCTCTTTGACACAGCTGACTCTGAGATAAGAATGGGATACTGTAAGCACATGACAGTTTACACAGCCAGGCAGGATCAGTTTACAGTataacagcagcagcatgtgGCTAACGCTCAGTGCTTCAGCCAGGGATAGCATGTAACATTTGGAGGTAGcaagactgaaatattttcttattgttctttttgttttgttttttacatatttGGAATACATGGGACTGTAGTttacatgaatatatatatatatatatatatcagctgcatttatttctgtacaTTGCAGTCTTCAAATTCAGCTGATTTGTGGTcacatattttgtatttaaggCCATAACAGAGGTCACAATATGTCTTGCAAGTAAAGGATAATTACTTTTCTATGTTGATAGAAAGAATACAGTCAAGAGCAGAATTTGAGTCAGAAAAAAACCCTTAGTATTAAAGAATCTGAACACTGGTGACTTCAGTTGTATTTGGTCTTGCATCTCTAAGCAGGACTGCCTTGCATGTGGGAGGGCTCTTCAGTTTGATGCGAGGGAGTACAACTGCTCCAAAATGCTCTTACTCTCCAGGCTGCAACGACCAGATTTAACTTCTCTGTGACAATATGACTCCTCTGCAGTTATGTCAGCGGATCATAATGTCCTGAGATTCTCTGGTCTGTGACACCTTAACGATATTGGTCCTAATGGTTGTGTTCCACTGCTGGCTGGTCTGTGACATCATGATGATGCTGCTCTGCACTCTTGTCAGGCTAGTGTCACCACAGTGGTGGCTGGTCTGTGATTTCACAGTATTGAGTTAGTTTGGTCTGTTGACTGCTCCACTGTTGTCTAGTCTTAATTGGATGTCATAATTGTAGTATGCCTTTACTCTACTTGTTCTCTACTGTTTTGTTGATGTGATCACAATGCTCATATTGATATTTGAATGTACATATTGAAggcttttaatacttttatctTTCAGAATTAGAGGTTATTATTAAAAGTTAAAGGCATTTGTTACACTTTGGCTTTTCTACTTTatataggctacttttactATTTTATACTGTAGACTAGGACCGCCATGGCTTTTCTTTATTCTTATCatcttatttgttttattgtaaagtaCACTACACCTTTGGTTCCAGCAGATTTCTGCTGCTTTGACATTCAAAGACCGCTTCAATCAGGCCTATTTTTATATGTTATCCTTACCAATTTCCAATTAAAAGTTGAAGGCTGAGCCTTTTAATTAATAGCCTGGGGAAGAAAAGGGACATCAATTCAAAATAGACAAATATCTCATCATTGAATGAAAGCTTTTGTTCAAGCAGCCTGTCCAGCTTTCTCCAACATTATAAATGATCAGGCCTACTTTCAAAAACAAGCCACACCTCCAGTGCATCTCACCACTCCAGTCCTCTCTGACATTTAGATTCACAACAAACCTATTAAAAATTAGTGCTAAAAGCTATATCATCTTACAAAACTGATGCAGCTCTAATTCTTAAGTGTGTTAATGGAATCTGTTTCACAGCTGAAGTGCTGTTGGTAAAGACTGTGCCTTCATTAATTAGCAGATAGCCTGCACGCCTTATATAAAGGTTAACAAAATGATTGGTTTGCTATTGTTGTACCCTATCCTTGGCGAATCACCTATTGTCCCTTTGAATAATTGAGACCAGTGGATTTTGCCTGTTTTAATTTTTCCTTGGTCAGCAACTAGCTACTAGTTTTGTCCCCAAGATCAATTGCCTTGGTAAcacaaccagagagagagagagagagagagagagagagagagagagagagagagagatttataCCCACAATGGCGACTGTAGGTATGCTAAATACCTCTGGTTCCTTATCCGGGAACTACCTCTTACTCTGCTATTGGGCCATTGGGTCACGTGGTAAAAGTAACTTTACAGGGCTGCTCGCAAGTAGGAGGGCTTTATGGAGCAGAAAAACGACAAAGCTAGAAAAATTATTTTCCACTCCAGAAATTAATGATCATGAGCTCGTATTTGATGGAGTCTAACTACATTGATCCGAAATTTCCTCCATGCGAGGAATATTCGCAGAATAACTACATCCCTGAGCATAGTCCAGAATATTACAGCCGCGCAAGGGAGACTGGCTTCCAGCATCACCATCAGGAGTTATATCCTCCGCGGGCGAGCTACCAAGAGCGCCAGTATAACTGTGCAAGCATCCCTGAACCTGTCACGCCAAGGGGACATGGAGTACCCCATTCTGCGCACCTGCTGACAGGGAAAGGGCAACCTGCTTCATGTGAAACCCCACAGTTGTCCATGTCCCCCGCCACCCCACCGGCCGCAACCTCCGCCTGCAACCAAGCTACCCCGGAACATCCAAACAGCACAGCCTCCTCCAAGCAGCCCGTGGTGTACCCATGGATGAAGAAAATTCACGTCAGCACTGTGAACTCGGGTTACAATGGGACGGAGCCCAAGCGGTCTAGGACAGCATACACCCGGCAGCAAGTCTTAGAATTGGAGAAGGAATTCCACTATAACCGATATTTAACTCGGCGGAGGCGCATCGAGATCGCCCACACCCTGGTTCTCTCCGAGCGACAGATTAAAATCTGGTTTCAAAACCGCAGGATGAAATGGAAAAAGGATCACAGGCTCCCGAACACCAAAGTGagatcctcttcctcctcctccgggTCCAACACAAGCTCAGCAGCCGGCGCTGTTGCCGCTGCCTCGGCCAGTAACACTGGGGGCCCCGACGAACTCACCGGAGCACAGCATGGCGAGGATATTACCAGGTTATAAAACCACGATCGGGAGTAGAAAAAGAACTGGTTATTTATAGAAcaattatattttttgttttcgtAGCTATCTTGTGCGGTTTCCTTTAAGTCCAAAGTTATATAAAATGCATGTTATATAGCATGGATTACTGCGAATACCGATTAATTATTTTTACGTGACACAGGGTTTAATTTATTTGAAGCTCAATTAAAATgatgttttttattaatatgaaggaaaaaaaggagaaaaaaatatacattttatcaAAATGTTATTGTGGGCCATTCTTTTGCCCTGCTGCCCAAGGTGAAATGCACAATCTATTTATTTCAAACAACACTGGAAGGAAATCAATATAATAATAGTTATTTTTGGTATTAAAAAAAGCTGGAACACACCATTGATCTTGAACTTGTATGTTTTGGATTATGTGTGAATTACCTCGTGTATTTCAGAAACAGGATTTTGATTTACAATTTAGTTTTGtggtgttgatgttgtgtttaGACCGTTAAAAAGCAGATTATTGTGAAATGCAATAAACGGAGTGTAGTGTACTTGTGCTAATCATATTGGTCAATAAAACAGTGAGTGTCTACTAGTTTTATATACGTTTGGTCGAAAATCATTTAGGCAAGATGAGGTCTGCTATTGTTTTTGGTCTTTCTTTTGGAGGGATCACCTTTAAAATTGTACAGATGTGTGAATACTTGAACATTTCATGAGGGAAACAAGAATCACTGTGTTTTCAAACTGTGTTTGTAAGTCCTGCAGCTCATTCTTGCTTCTTTAaattaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagactgactgTGTTTTAAAGCCTAATTTATAATGGACTAAAGTTATTTCTAAAATATGAAATAGTTTGCGCTGTACATTATATGCAACCTCATCAGTCTGAAGGGCATTCAATTAACGCTTAAGAGAAGCCACTGAGGCCCTCCACTCTGCACTGCCTCTGCCAGTGCTTCCTTCGTCCTGACTTGAACACAAAGCTGCATGCGTTCAATTTAGACATTTGTTAGAttatacattgttgtggaaatattctCATTTATTTTGTAAGCCAAGTAGTTGCCCTGCTTTTTCTATAGTGCACTGCGTCATGCGACTgagttttcaaatgtaaagaaaataaaataaaaaataaaataaaggcgTGAGTTGAAGATA

Function

symbol description
hoxc4 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-C4 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799368.1 True 4761 mRNA 0.40 2 20828727 20833997

Neighbor

gene id symbol gene type direction distance location
LOC120558390 NA coding downstream 8128 20817418 ~ 20820599 (-)
hoxc1a LOC104956907 coding downstream 20193 20800099 ~ 20808534 (-)
hnrnpa1b hnrnpa1 coding downstream 74197 20751583 ~ 20754530 (-)
copz1 copz1 coding downstream 87768 20730106 ~ 20740959 (-)
LOC120558914 LOC103360972,LOC103385138,LOC106524412,LOC101071942,LOC107092037 coding downstream 396996 20409537 ~ 20431731 (-)
hoxc5a hoxc5,LOC100534464,LOC101471491 coding upstream 5954 20839951 ~ 20842893 (-)
hoxc6a hoxc6 coding upstream 9696 20843693 ~ 20845764 (-)
hoxc8a hoxc8 coding upstream 20607 20854604 ~ 20858236 (-)
hoxc9a hoxc9 coding upstream 27765 20861762 ~ 20864323 (-)
hoxc11a hoxc11 coding upstream 48031 20882028 ~ 20886252 (-)
G51577 NA non-coding downstream 102826 20725627 ~ 20725901 (-)
G51574 NA non-coding downstream 105729 20722650 ~ 20722998 (-)
LOC120558476 NA non-coding downstream 165150 20662353 ~ 20663577 (-)
G51544 NA non-coding downstream 386920 20441496 ~ 20441807 (-)
LOC120558923 NA non-coding downstream 445852 20367986 ~ 20382875 (-)
G51589 hoxc10,hoxc8,hoxc11,LOC102193660,LOC100690382,LOC101470732,LOC103467376,LOC102786831,LOC106947643,LOC106565461,LOC105016991,LOC103385114 non-coding upstream 28229 20862226 ~ 20952782 (-)
G51614 NA non-coding upstream 191136 21025133 ~ 21031699 (-)
G51620 NA non-coding upstream 203085 21037082 ~ 21041944 (-)
G51606 NA non-coding upstream 212052 21046049 ~ 21048786 (-)
G51673 NA non-coding upstream 332725 21166722 ~ 21167748 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 1013409 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 1750946 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 1941832 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 2727155 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 2933645 17835080 ~ 17895082 (-)
fmnl3 fmnl3 other upstream 333907 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 365343 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 1136055 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 1389152 22223149 ~ 22229421 (-)
G52226 NA other upstream 1695609 22529606 ~ 22530708 (-)

Expression


Co-expression Network