hoxc6a (hoxc6)


Basic Information

Item Value
gene id hoxc6a
gene name hoxc6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20843693 ~ 20845764 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799372.1
TATAACACTCGGGTTTGTGCGTCTTAACCGGAGATTGAAAATTAATAATATTGAATCCTCAAAGTAGCCCACGTCCAGTTAGAGAAGCAGAAAGTcacggagaaaaaaagaagacctTGGAGAAAGGTGTGGTTGGTTGACACAGACGGGAAGGAGATTTACTGAGAACGAGATTGAAAAGAGACCGATAAAGACGTGGGGAGAGTTGGAGAGAGGGTTACAGGCAAGGTATGAATTCTTATTTCGCAAACCCGTCGCTCTCCTGCCATTTATCCGGTGGTCAAGATGTTTTGCCTAACGTACCCCTAAACTCCACCACCTATGACACAGTCAGACATTTTTCGTCGTACGGTGCTGCTGTGACCCAGAATCGGATATATGCACCTTTCTACTCTCCTCAAGATAATGTCGTTTTTGGGTCTGGCAGGGCACAATATGAATATGGATCAAACGTGTTTCTTCAAGACAAGGACGTGCTCCCCAGTTGCAGACAAACAAACATGGGACTCAATACACAAAGTCACATTGCTCAAGAGTACAGTTTGGATCAAGGAAGAGCAGGAGCGCAGGATCAGAAAACCAACATCCCGATCTACCCGTGGATGCAGCGAATGAACTCACACAGCGTGACTTCACTTTGTATTTCAGCAGGAGTGGGCTACGGGACAGACAGACGCAGAGGACGTCAAATATACTCTCGTTACCAAACACTCGAGCTGGAGAAGGAGTTTCATTTCAACCGCTACCTGACCAGGCGCAGACGCATCGAAATCGCAAACGCGCTTTGTTTAACAGAGCGGCAGATCAAAATCTGGTTTCAGAACCGACGCATGAAATGGAAGAAAGAGAGCAACCTGACCTCCACGGTAACTGGAAGTGAACAGACAGGAGCCTCTCCAGAGGAGGAACGCAATGGCGAAATTGAAGAAGAGAAGGATGAGGACAAGAAGAAAGAATAgttcaaaaaaaagaagaagagaaaaaaaaacacctgatgACCATCAAAACCCAACATAACTACCTAAAAAAATCTATATGGACTTGAGAGCGACTTCACTGCATGATGGCTACCCGCAGCTCTCCCACTTATATCCTATGTTGACTACAGGAGTGTTGAGCCTTAGAAATCCAGATTATTTCAGCCACAGCCCCTGTGACATTTGGAGCGCtgatcttttgtttgtttgttattgcAATGCCACACTTGtattgtgaaaataaaaagaagtaTTAATTTCTACTTTATTTCTTATGCCAGTAAAATCTATGTATTACCCCCCACACCCCATCCATCACTGTGAACTCTTTGATCACCTCACAAAATACAGTGTTGGTCAGACTTAACTCAATGTTGTACATGCCCATTCCACGGAAGGAACGGACCGGCGGACACTTTATTTTATAGTATCTAGTACTTGAATCATCCGCAGAAAAGTGTCCTGTATAAACATGAAAGTTGCACGAATAAAGACTgtagtccacacacacacacacacacacacacacacacacacacacacactctcttgaAATGCCTGTAAATAATCAACAATATACTATGTAAATCCTGTGAGGACTTATGTGCATTTAGCCGCTTTAATAGACGCTGCATAACATACAATTGCGCTTAGCCCCTTTTTCTGATcatta
>XM_039799373.1
TATAACACTCGGGTTTGTGCGTCTTAACCGGAGATTGAAAATTAATAATATTGAATCCTCAAAGTAGCCCACGTCCAGTTAGAGAAGCAGAAAGTcacggagaaaaaaagaagacctTGGAGAAAGGTGTGGTTGGTTGACACAGACGGGAAGGAGATTTACTGAGAACGAGATTGAAAAGAGACCGATAAAGACGTGGGGAGAGTTGGAGAGAGGGTTACAGGCAAGGTATGAATTCTTATTTCGCAAACCCGTCGCTCTCCTGCCATTTATCCGGTGGTCAAGATGTTTTGCCTAACGTACCCCTAAACTCCACCACCTATGACACAGTCAGACATTTTTCGTCGTACGGTGCTGCTGTGACCCAGAATCGGATATATGCACCTTTCTACTCTCCTCAAGATAATGTCGTTTTTGGGTCTGGCAGGGCACAATATGAATATGGATCAAACGTGTTTCTTCAAGACAAGGACGTGCTCCCCAGTTGCAGACAAACAAACATGGGACTCAATACACAAAGTCACATTGCTCAAGAGTACAGTTTGGATCAAGGAAGAGCAGGAGCGCAGGATCAGAAAACCAACATCCCGATCTACCCGTGGATGCAGCGAATGAACTCACACAGCGCAGGAGTGGGCTACGGGACAGACAGACGCAGAGGACGTCAAATATACTCTCGTTACCAAACACTCGAGCTGGAGAAGGAGTTTCATTTCAACCGCTACCTGACCAGGCGCAGACGCATCGAAATCGCAAACGCGCTTTGTTTAACAGAGCGGCAGATCAAAATCTGGTTTCAGAACCGACGCATGAAATGGAAGAAAGAGAGCAACCTGACCTCCACGGTAACTGGAAGTGAACAGACAGGAGCCTCTCCAGAGGAGGAACGCAATGGCGAAATTGAAGAAGAGAAGGATGAGGACAAGAAGAAAGAATAgttcaaaaaaaagaagaagagaaaaaaaaacacctgatgACCATCAAAACCCAACATAACTACCTAAAAAAATCTATATGGACTTGAGAGCGACTTCACTGCATGATGGCTACCCGCAGCTCTCCCACTTATATCCTATGTTGACTACAGGAGTGTTGAGCCTTAGAAATCCAGATTATTTCAGCCACAGCCCCTGTGACATTTGGAGCGCtgatcttttgtttgtttgttattgcAATGCCACACTTGtattgtgaaaataaaaagaagtaTTAATTTCTACTTTATTTCTTATGCCAGTAAAATCTATGTATTACCCCCCACACCCCATCCATCACTGTGAACTCTTTGATCACCTCACAAAATACAGTGTTGGTCAGACTTAACTCAATGTTGTACATGCCCATTCCACGGAAGGAACGGACCGGCGGACACTTTATTTTATAGTATCTAGTACTTGAATCATCCGCAGAAAAGTGTCCTGTATAAACATGAAAGTTGCACGAATAAAGACTgtagtccacacacacacacacacacacacacacacacacacacacacactctcttgaAATGCCTGTAAATAATCAACAATATACTATGTAAATCCTGTGAGGACTTATGTGCATTTAGCCGCTTTAATAGACGCTGCATAACATACAATTGCGCTTAGCCCCTTTTTCTGATcatta
>XM_039799374.1
TATAACACTCGGGTTTGTGCGTCTTAACCGGAGATTGAAAATTAATAATATTGAATCCTCAAAGTAGCCCACGTCCAGTTAGAGAAGCAGAAAGTcacggagaaaaaaagaagacctTGGAGAAAGGTGTGGTTGGTTGACACAGACGGGAAGGAGATTTACTGAGAACGAGATTGAAAAGAGACCGATAAAGACGTGGGGAGAGTTGGAGAGAGGGTTACAGGCAAGGTATGAATTCTTATTTCGCAAACCCGTCGCTCTCCTGCCATTTATCCGGTGGTCAAGATGTTTTGCCTAACGTACCCCTAAACTCCACCACCTATGACACAGTCAGACATTTTTCGTCGTACGGTGCTGCTGTGACCCAGAATCGGATATATGCACCTTTCTACTCTCCTCAAGATAATGTCGTTTTTGGGTCTGGCAGGGCACAATATGAATATGGATCAAACGTGTTTCTTCAAGACAAGGACGTGCTCCCCAGTTGCAGACAAACAAACATGGGACTCAATACACAAAGTCACATTGCTCAAGAGTACAGTTTGGATCAAGGAAGAGCAGGAGCGCAGGATCAGAAAACCAACATCCCGATCTACCCGTGGATGCAGCGAATGAACTCACACAGCGGAGTGGGCTACGGGACAGACAGACGCAGAGGACGTCAAATATACTCTCGTTACCAAACACTCGAGCTGGAGAAGGAGTTTCATTTCAACCGCTACCTGACCAGGCGCAGACGCATCGAAATCGCAAACGCGCTTTGTTTAACAGAGCGGCAGATCAAAATCTGGTTTCAGAACCGACGCATGAAATGGAAGAAAGAGAGCAACCTGACCTCCACGGTAACTGGAAGTGAACAGACAGGAGCCTCTCCAGAGGAGGAACGCAATGGCGAAATTGAAGAAGAGAAGGATGAGGACAAGAAGAAAGAATAgttcaaaaaaaagaagaagagaaaaaaaaacacctgatgACCATCAAAACCCAACATAACTACCTAAAAAAATCTATATGGACTTGAGAGCGACTTCACTGCATGATGGCTACCCGCAGCTCTCCCACTTATATCCTATGTTGACTACAGGAGTGTTGAGCCTTAGAAATCCAGATTATTTCAGCCACAGCCCCTGTGACATTTGGAGCGCtgatcttttgtttgtttgttattgcAATGCCACACTTGtattgtgaaaataaaaagaagtaTTAATTTCTACTTTATTTCTTATGCCAGTAAAATCTATGTATTACCCCCCACACCCCATCCATCACTGTGAACTCTTTGATCACCTCACAAAATACAGTGTTGGTCAGACTTAACTCAATGTTGTACATGCCCATTCCACGGAAGGAACGGACCGGCGGACACTTTATTTTATAGTATCTAGTACTTGAATCATCCGCAGAAAAGTGTCCTGTATAAACATGAAAGTTGCACGAATAAAGACTgtagtccacacacacacacacacacacacacacacacacacacacacactctcttgaAATGCCTGTAAATAATCAACAATATACTATGTAAATCCTGTGAGGACTTATGTGCATTTAGCCGCTTTAATAGACGCTGCATAACATACAATTGCGCTTAGCCCCTTTTTCTGATcatta

Function

symbol description
hoxc6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic skeletal system development. Located in cytosol and nucleoplasm.

NR:

description
homeobox protein Hox-C6a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09306 HOX_6; homeobox protein HoxA/B/C6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799372.1 True 1650 mRNA 0.44 2 20843693 20845764
XM_039799373.1 False 1629 mRNA 0.44 2 20843693 20845764
XM_039799374.1 False 1626 mRNA 0.44 2 20843693 20845764

Neighbor

gene id symbol gene type direction distance location
hoxc5a hoxc5,LOC100534464,LOC101471491 coding downstream 800 20839951 ~ 20842893 (-)
hoxc4a hoxc4 coding downstream 9696 20828727 ~ 20833997 (-)
LOC120558390 NA coding downstream 23094 20817418 ~ 20820599 (-)
hoxc1a LOC104956907 coding downstream 35159 20800099 ~ 20808534 (-)
hnrnpa1b hnrnpa1 coding downstream 89163 20751583 ~ 20754530 (-)
hoxc8a hoxc8 coding upstream 8840 20854604 ~ 20858236 (-)
hoxc9a hoxc9 coding upstream 15998 20861762 ~ 20864323 (-)
hoxc11a hoxc11 coding upstream 36264 20882028 ~ 20886252 (-)
hoxc12a hoxc12,LOC108235205,LOC107390914 coding upstream 49504 20895268 ~ 20899135 (-)
hoxc13a hoxc13 coding upstream 60292 20906056 ~ 20910417 (-)
G51577 NA non-coding downstream 117792 20725627 ~ 20725901 (-)
G51574 NA non-coding downstream 120695 20722650 ~ 20722998 (-)
LOC120558476 NA non-coding downstream 180116 20662353 ~ 20663577 (-)
G51544 NA non-coding downstream 401886 20441496 ~ 20441807 (-)
LOC120558923 NA non-coding downstream 460818 20367986 ~ 20382875 (-)
G51589 hoxc10,hoxc8,hoxc11,LOC102193660,LOC100690382,LOC101470732,LOC103467376,LOC102786831,LOC106947643,LOC106565461,LOC105016991,LOC103385114 non-coding upstream 16462 20862226 ~ 20952782 (-)
G51614 NA non-coding upstream 179369 21025133 ~ 21031699 (-)
G51620 NA non-coding upstream 191318 21037082 ~ 21041944 (-)
G51606 NA non-coding upstream 200285 21046049 ~ 21048786 (-)
G51673 NA non-coding upstream 320958 21166722 ~ 21167748 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 1028375 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 1765912 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 1956798 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 2742121 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 2948611 17835080 ~ 17895082 (-)
fmnl3 fmnl3 other upstream 322140 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 353576 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 1124288 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 1377385 22223149 ~ 22229421 (-)
G52226 NA other upstream 1683842 22529606 ~ 22530708 (-)

Expression


Co-expression Network