hoxc5a (hoxc5,LOC100534464,LOC101471491)


Basic Information

Item Value
gene id hoxc5a
gene name hoxc5,LOC100534464,LOC101471491
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20839951 ~ 20842893 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799375.1
CTACTCCACCTATAAATCCTGGATTATTTTTTTAGGGCAGACAGCTCTGAATTTTCCAAAAGCGGCTACAAAGAAAGGCAATGATCAACAAAAACAAGGAAATAACCGCAACATACACGCCGCAGCCCTCTCtaggttaaaaaataaagtaggctatcggtgatagtttaaaaaatgagcTCTTATGTTGACAGCTGCAATCTCAGGCAAACAAGCGAGACAACTTCTCCTAACACTATGTTTAGTTTCGATCTTTCTGGGCGCACGTCCAGCCGCTATGAGGGTGTTAATGTGAACGGGATATTCACTTGTCCCGTCCCCACGACCTCTGTTGAACGGGAGGAGATGAAAACTAGCCTGCGTGGCAATACGGATACTCCTCTCCCGTCAGGACCACAGATAACCATGGTCTCCAGTAGCTCGTCCGTGGACGCAAGCGGGCTCAGCTACTGCAGCAGCGCGCTGCTGGGACTAGGGGCAGACAGAGACCCGGAGAGGAGCGCAAAATCCGGCGGCAACAAGAGCCAGGAGAGCGAGAGAAACGCGGAGAACACGCAAACGGTGAAACGACACACAAATGTGAACCAGCGTCAGGACAGTGAGCAGCGGCCACAGATTTATCCATGGATGACAAAACTGCACATGAGCCACGAATCGGAGGGTAAGCGGTCCAGGACCAGTTACACCCGCTACCAGACTCTGGAGCTGGAGAAAGAGTTTCACTTCAACCGGTACCTGAGCCGCCGCAGGCGCGTAGAGATCGCCCACACCCTGTGTCTAAACGAGAGGCAGATCAAAATCTGGTTCCAGAACAGACGAATGAAGTGGAAGAAGGACTCAAAGATCAAAGTGAAGGAATAAAAAGTGCACCAGAGAGCGGGGTGCATGCAGCACGTTTTCAGCCCCACGTTGCACAGTGCTGGAGTGCCGCCTGACCTCCGGATGAACTGCTTGGAGCAATGACATCATGACACCGCTCTGTGTGCTTCATCACCAATTATGTGTCACTTGCTGCAGTTTGGGACCTAATGTATTGAATATCACTCACTTTGATCAATCGGTTTACATTTCTAAATTAATTTGCTGCCCATGCGATGATAACCTCACTTTGCTGCACGAAGGGGACAAGAGGTTGAGGGGAGCATGGTCCTTCCCGCTGCAAGGCTTTTGGTCTGCAGTGCACTGAAAGGCTGCACAATGCTACTATTAATCTACGTTTTTAATTAGGACAGGAGTAGTGGGGGATGGGTGATAGCCCGCATCATTTCCAACACTAGCATGACCacgtgataaaaaaaagtttaaggtCAACGAatcaaaataaagacaaaaaatatgACTGGCTGCTTAAGAGCAACAGCGAGATAGTTTCCCACCAGTAGAACTACTTTTCcacctctttctttttcctttgtaAATTCACTCTTTAATATGTTGCAGTGGTTGGATGTGTGATGTGTTCAGTGAGCTAAAATCTTTGTGAGTGGGTTTCTGTGAAGGCATCCTCCATGTTGTGTGTCATATCCTTGTGAATCTAAATCATTGTGTATAATTCAGCGACTGTATGTGATAATATTGTGATGTGCAATAAAGCCATTTCTCTCGCCCTCTGTAAACTTAAGGCGCCTGGTTCGCACGAGGCCTAATAACGGTTTACACGAGGCCTAATAACTGATAGATGGCTTAATTGTCGATTGTAACCAATAAAGTCTCATCATTAAAATTAA

Function

symbol description
hoxc5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic skeletal system development. Located in cell junction and nucleoplasm.

NR:

description
homeobox protein Hox-C5a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799375.1 True 1727 mRNA 0.47 2 20839951 20842893

Neighbor

gene id symbol gene type direction distance location
hoxc4a hoxc4 coding downstream 5954 20828727 ~ 20833997 (-)
LOC120558390 NA coding downstream 19352 20817418 ~ 20820599 (-)
hoxc1a LOC104956907 coding downstream 31417 20800099 ~ 20808534 (-)
hnrnpa1b hnrnpa1 coding downstream 85421 20751583 ~ 20754530 (-)
copz1 copz1 coding downstream 98992 20730106 ~ 20740959 (-)
hoxc6a hoxc6 coding upstream 800 20843693 ~ 20845764 (-)
hoxc8a hoxc8 coding upstream 11711 20854604 ~ 20858236 (-)
hoxc9a hoxc9 coding upstream 18869 20861762 ~ 20864323 (-)
hoxc11a hoxc11 coding upstream 39135 20882028 ~ 20886252 (-)
hoxc12a hoxc12,LOC108235205,LOC107390914 coding upstream 52375 20895268 ~ 20899135 (-)
G51577 NA non-coding downstream 114050 20725627 ~ 20725901 (-)
G51574 NA non-coding downstream 116953 20722650 ~ 20722998 (-)
LOC120558476 NA non-coding downstream 176374 20662353 ~ 20663577 (-)
G51544 NA non-coding downstream 398144 20441496 ~ 20441807 (-)
LOC120558923 NA non-coding downstream 457076 20367986 ~ 20382875 (-)
G51589 hoxc10,hoxc8,hoxc11,LOC102193660,LOC100690382,LOC101470732,LOC103467376,LOC102786831,LOC106947643,LOC106565461,LOC105016991,LOC103385114 non-coding upstream 19333 20862226 ~ 20952782 (-)
G51614 NA non-coding upstream 182240 21025133 ~ 21031699 (-)
G51620 NA non-coding upstream 194189 21037082 ~ 21041944 (-)
G51606 NA non-coding upstream 203156 21046049 ~ 21048786 (-)
G51673 NA non-coding upstream 323829 21166722 ~ 21167748 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 1024633 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 1762170 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 1953056 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 2738379 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 2944869 17835080 ~ 17895082 (-)
fmnl3 fmnl3 other upstream 325011 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 356447 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 1127159 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 1380256 22223149 ~ 22229421 (-)
G52226 NA other upstream 1686713 22529606 ~ 22530708 (-)

Expression


Co-expression Network