zgc:56699


Basic Information

Item Value
gene id zgc:56699
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11696956 ~ 11699952 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799388.1
CGAGATGTTCGCTAGCTAAATGGGGGCGGAGCGACGAAATTTTCAAAAGCTTTCGCCGGTCGCAAGCACGCcgacaagaaaagaaaaagaaaagGTGAAACTTAACTGCACTAAACGGCTGGTTGGAAACTGCAAACCTGGTTTGCCAGTTGGTGTCTTCAGTAAATCCCAGCTAGCGATGGCGGCCACCATCACATTTGGAACCACCTGCGCTCCATGCAAAACTGCTGCTGAGCAGAGTGCACAGTTGGAAGAAGAAACCgatgaaaaaggaAACTGTGACCCGGAAAAACTTCTGCAGTGCCCTTTTGATAAGAACCACCAAATCCGAGCTTGCCGCTTCCCTTACCATCTGATAAAGTGCAGGAAGAATCATCCGAAACTGGCCATGGAGCTAAAAACCTGCCCTTTCAATGCTCGCCACCTGGTCCCCAAGCATGAGCTGACATACCACACTGAAACCTGTGAAGACCGAATATCTGTGGACACTGAAGATGGTGGAAGTACAAATGGACTTAGTAAATGGCAGGTCCCAGTCAGCACTTGGGTAAACCAGAACATGACTGAGGATTGGGACAAAGAGGCTGATGATGATGCTGCTCCGTTTGTGTGGGGTGTAAACACAGTCCTGAATCAGAAGCAGCTGCAGGAAACGATGCCCACCAACAACCTTGGTCCAAGTTTTAGAACGCCCAATACCCTTCCCTGGACCCCGATATAAAGTATAATGCATGCTTaacttattttatatttgatataCTGTAGGTTCAAGTTGCAGCAGTCTCATTTTAGTCACCTGATGTGGTACCGTAACTGCAGAAAAGCCtcctttgttttagttttttctgtatttatgtgCGTTCCCAACTGTTAACAGTTACAAATTGCAGTGGTTGAATATTGTGGGCTTGTTATATTAAAggtgtttttatttcaaataattGTGTGAAGTTAGCATGGTAGGTGTTCTATTTCAAATTTTTGTGGtgacttttgaaaatgtttactaaACCGAATCGCATGTTGTAATGTGCATGGATTTCAAATACAGTTTGGCAATGGGA
>XM_039799389.1
TTCGCTAGCTAAATGGGGGCGGAGCGACGAAATTTTCAAAAGCTTTCGCCGGTCGCAAGCACGCcgacaagaaaagaaaaagaaaagGCGACTGCTTCACTCAAGTGTAGATAGCACAGACACTTTTGCCAGTTGGTGTCTTCAGTAAATCCCAGCTAGCGATGGCGGCCACCATCACATTTGGAACCACCTGCGCTCCATGCAAAACTGCTGCTGAGCAGAGTGCACAGTTGGAAGAAGAAACCgatgaaaaaggaAACTGTGACCCGGAAAAACTTCTGCAGTGCCCTTTTGATAAGAACCACCAAATCCGAGCTTGCCGCTTCCCTTACCATCTGATAAAGTGCAGGAAGAATCATCCGAAACTGGCCATGGAGCTAAAAACCTGCCCTTTCAATGCTCGCCACCTGGTCCCCAAGCATGAGCTGACATACCACACTGAAACCTGTGAAGACCGAATATCTGTGGACACTGAAGATGGTGGAAGTACAAATGGACTTAGTAAATGGCAGGTCCCAGTCAGCACTTGGGTAAACCAGAACATGACTGAGGATTGGGACAAAGAGGCTGATGATGATGCTGCTCCGTTTGTGTGGGGTGTAAACACAGTCCTGAATCAGAAGCAGCTGCAGGAAACGATGCCCACCAACAACCTTGGTCCAAGTTTTAGAACGCCCAATACCCTTCCCTGGACCCCGATATAAAGTATAATGCATGCTTaacttattttatatttgatataCTGTAGGTTCAAGTTGCAGCAGTCTCATTTTAGTCACCTGATGTGGTACCGTAACTGCAGAAAAGCCtcctttgttttagttttttctgtatttatgtgCGTTCCCAACTGTTAACAGTTACAAATTGCAGTGGTTGAATATTGTGGGCTTGTTATATTAAAggtgtttttatttcaaataattGTGTGAAGTTAGCATGGTAGGTGTTCTATTTCAAATTTTTGTGGtgacttttgaaaatgtttactaaACCGAATCGCATGTTGTAATGTGCATGGATTTCAAATACAGTTTGGCAATGGGA
>XM_039799390.1
TTAGTAAACGTTCTTTCAGGTGAAACTTAACTGCACTAAACGGCTGGTTGGAAACTGCAAACCTGGTTTGCCAGTTGGTGTCTTCAGTAAATCCCAGCTAGCGATGGCGGCCACCATCACATTTGGAACCACCTGCGCTCCATGCAAAACTGCTGCTGAGCAGAGTGCACAGTTGGAAGAAGAAACCgatgaaaaaggaAACTGTGACCCGGAAAAACTTCTGCAGTGCCCTTTTGATAAGAACCACCAAATCCGAGCTTGCCGCTTCCCTTACCATCTGATAAAGTGCAGGAAGAATCATCCGAAACTGGCCATGGAGCTAAAAACCTGCCCTTTCAATGCTCGCCACCTGGTCCCCAAGCATGAGCTGACATACCACACTGAAACCTGTGAAGACCGAATATCTGTGGACACTGAAGATGGTGGAAGTACAAATGGACTTAGTAAATGGCAGGTCCCAGTCAGCACTTGGGTAAACCAGAACATGACTGAGGATTGGGACAAAGAGGCTGATGATGATGCTGCTCCGTTTGTGTGGGGTGTAAACACAGTCCTGAATCAGAAGCAGCTGCAGGAAACGATGCCCACCAACAACCTTGGTCCAAGTTTTAGAACGCCCAATACCCTTCCCTGGACCCCGATATAAAGTATAATGCATGCTTaacttattttatatttgatataCTGTAGGTTCAAGTTGCAGCAGTCTCATTTTAGTCACCTGATGTGGTACCGTAACTGCAGAAAAGCCtcctttgttttagttttttctgtatttatgtgCGTTCCCAACTGTTAACAGTTACAAATTGCAGTGGTTGAATATTGTGGGCTTGTTATATTAAAggtgtttttatttcaaataattGTGTGAAGTTAGCATGGTAGGTGTTCTATTTCAAATTTTTGTGGtgacttttgaaaatgtttactaaACCGAATCGCATGTTGTAATGTGCATGGATTTCAAATACAGTTTGGCAATGGGA
>XM_039799392.1
AGTAAACGTTCTTTCAGGCGACTGCTTCACTCAAGTGTAGATAGCACAGACACTTTTGCCAGTTGGTGTCTTCAGTAAATCCCAGCTAGCGATGGCGGCCACCATCACATTTGGAACCACCTGCGCTCCATGCAAAACTGCTGCTGAGCAGAGTGCACAGTTGGAAGAAGAAACCgatgaaaaaggaAACTGTGACCCGGAAAAACTTCTGCAGTGCCCTTTTGATAAGAACCACCAAATCCGAGCTTGCCGCTTCCCTTACCATCTGATAAAGTGCAGGAAGAATCATCCGAAACTGGCCATGGAGCTAAAAACCTGCCCTTTCAATGCTCGCCACCTGGTCCCCAAGCATGAGCTGACATACCACACTGAAACCTGTGAAGACCGAATATCTGTGGACACTGAAGATGGTGGAAGTACAAATGGACTTAGTAAATGGCAGGTCCCAGTCAGCACTTGGGTAAACCAGAACATGACTGAGGATTGGGACAAAGAGGCTGATGATGATGCTGCTCCGTTTGTGTGGGGTGTAAACACAGTCCTGAATCAGAAGCAGCTGCAGGAAACGATGCCCACCAACAACCTTGGTCCAAGTTTTAGAACGCCCAATACCCTTCCCTGGACCCCGATATAAAGTATAATGCATGCTTaacttattttatatttgatataCTGTAGGTTCAAGTTGCAGCAGTCTCATTTTAGTCACCTGATGTGGTACCGTAACTGCAGAAAAGCCtcctttgttttagttttttctgtatttatgtgCGTTCCCAACTGTTAACAGTTACAAATTGCAGTGGTTGAATATTGTGGGCTTGTTATATTAAAggtgtttttatttcaaataattGTGTGAAGTTAGCATGGTAGGTGTTCTATTTCAAATTTTTGTGGtgacttttgaaaatgtttactaaACCGAATCGCATGTTGTAATGTGCATGGATTTCAAATACAGTTTGGCAATGGGA
>XM_039799393.1
AATGAAGTCATGTGACTTCGAGATGTTCGCTAGCTAAATGGGGGCGGAGCGACGAAATTTTCAAAAGCTTTCGCCGGTCGCAAGCACGCcgacaagaaaagaaaaagaaaagTTTGCCAGTTGGTGTCTTCAGTAAATCCCAGCTAGCGATGGCGGCCACCATCACATTTGGAACCACCTGCGCTCCATGCAAAACTGCTGCTGAGCAGAGTGCACAGTTGGAAGAAGAAACCgatgaaaaaggaAACTGTGACCCGGAAAAACTTCTGCAGTGCCCTTTTGATAAGAACCACCAAATCCGAGCTTGCCGCTTCCCTTACCATCTGATAAAGTGCAGGAAGAATCATCCGAAACTGGCCATGGAGCTAAAAACCTGCCCTTTCAATGCTCGCCACCTGGTCCCCAAGCATGAGCTGACATACCACACTGAAACCTGTGAAGACCGAATATCTGTGGACACTGAAGATGGTGGAAGTACAAATGGACTTAGTAAATGGCAGGTCCCAGTCAGCACTTGGGTAAACCAGAACATGACTGAGGATTGGGACAAAGAGGCTGATGATGATGCTGCTCCGTTTGTGTGGGGTGTAAACACAGTCCTGAATCAGAAGCAGCTGCAGGAAACGATGCCCACCAACAACCTTGGTCCAAGTTTTAGAACGCCCAATACCCTTCCCTGGACCCCGATATAAAGTATAATGCATGCTTaacttattttatatttgatataCTGTAGGTTCAAGTTGCAGCAGTCTCATTTTAGTCACCTGATGTGGTACCGTAACTGCAGAAAAGCCtcctttgttttagttttttctgtatttatgtgCGTTCCCAACTGTTAACAGTTACAAATTGCAGTGGTTGAATATTGTGGGCTTGTTATATTAAAggtgtttttatttcaaataattGTGTGAAGTTAGCATGGTAGGTGTTCTATTTCAAATTTTTGTGGtgacttttgaaaatgtttactaaACCGAATCGCATGTTGTAATGTGCATGGATTTCAAATACAGTTTGGCAATGGGA

Function

NR:

description
gametocyte-specific factor 1-like

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03030 DNA replication
ko03410 Base excision repair
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799388.1 True 1064 mRNA 0.44 8 11696956 11699934
XM_039799389.1 False 1047 mRNA 0.44 8 11696956 11699927
XM_039799390.1 False 989 mRNA 0.43 8 11696956 11699764
XM_039799392.1 False 977 mRNA 0.44 8 11696956 11699762
XM_039799393.1 False 1035 mRNA 0.44 7 11696956 11699952

Neighbor

gene id symbol gene type direction distance location
si:dkey-190g6.2 coq10a,LOC106917050,LOC103139137,LOC102221461 coding downstream 110986 11580293 ~ 11585970 (-)
racgap1 racgap1 coding downstream 165878 11521321 ~ 11531078 (-)
bin2a LOC102783891 coding downstream 178468 11510733 ~ 11518488 (-)
pou6f1 pou6f1,LOC102796073 coding downstream 198892 11487065 ~ 11498064 (-)
tfcp2 tfcp2 coding downstream 219040 11464498 ~ 11477916 (-)
cd63 NA coding upstream 16667 11716619 ~ 11731081 (-)
ormdl2 ormdl2,LOC101074775,LOC101464341 coding upstream 46355 11746307 ~ 11750609 (-)
spats2 spats2,LOC102777081 coding upstream 84851 11784803 ~ 11806444 (-)
LOC120559301 LOC103366116 coding upstream 118198 11818150 ~ 11825217 (-)
LOC120558426 LOC102786184,LOC101465378,LOC100693664 coding upstream 135711 11835663 ~ 11841573 (-)
G48911 NA non-coding downstream 81247 11607970 ~ 11615709 (-)
G48910 ankrd52 non-coding downstream 90342 11605733 ~ 11606614 (-)
G48907 ankrd52 non-coding downstream 96448 11600292 ~ 11600508 (-)
G48886 cs non-coding downstream 117968 11576539 ~ 11578988 (-)
G48903 LOC102783589,LOC107599367 non-coding downstream 123967 11564071 ~ 11572989 (-)
G49024 NA non-coding upstream 303315 12003267 ~ 12063255 (-)
G49084 NA non-coding upstream 419706 12119658 ~ 12121550 (-)
G49092 NA non-coding upstream 440983 12140935 ~ 12141414 (-)
G49112 NA non-coding upstream 446776 12146728 ~ 12147033 (-)
G49118 NA non-coding upstream 511791 12211743 ~ 12213541 (-)
LOC120558961 NA other downstream 188619 11503827 ~ 11508337 (-)
G48697 NA other downstream 963069 10641405 ~ 10733887 (-)
G48523 NA other downstream 1671131 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 1911715 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 1943270 9727874 ~ 9753686 (-)
srxn1 srxn1 other upstream 186013 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 259427 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 426934 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 447462 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 520782 12220734 ~ 12223028 (-)

Expression


Co-expression Network