LOC120558439 (LOC102207434,LOC101484296,LOC102207724,LOC106675709)


Basic Information

Item Value
gene id LOC120558439
gene name LOC102207434,LOC101484296,LOC102207724,LOC106675709
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39905690 ~ 39918513 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799447.1
ATGACAGCTCCAGGTTGTATCGGGAGAAGCCACCTCCTCCTGGAGTCCAAAGGAGGGACAGCCGAACAAAAGAAGTATATGAGGATAGTGATGGTGGGGAAGACTGGGAATGGGAAAAGTACCACTGGAAACACCATTCTGGGACAAAAGTGCTTTGAATCAAAGTTCAGTGCAAAGTCTATGACTGTAAAATGTTCCCAGGGCAAAGCTGTGGTGGATGGGCAACAGGTGGCTGTTATCGACACCCCAGGCCTGTTTGACACCAGGTATGACGAGGTTAAAACAACTGAAGATATGAGCCAGTGCATCTCTTATGCTGCTCCTGGACCCCATGTGTTCCTGGTGGTCATCCGGCTGGGCAGATACACTGAAGAGGAAAAGCAGACAGTGCAAAGGATTCAAGACATCTTTGGCCAGGCTGCAGACAGATACAGCATGGTTCTCTTTACTCATGGGGACCAACTTGAAGACACAACTATTGAAGACTTCTTGAAGGAATCCTCAGACCTGCAAGAACTCGTGGCCAGATGTAATGGCCAGTACCATGTCTTCAATAATAAGCTGAAGGATCGCTCTCAGGTCACTGAGCTGCTCCAGAAGATCAGAAATGTAAACCAGAAGAACGGAGGAAGCCACTACACAAACCAGATGTTCCAAGAGGCTGAGATGCTAATCGAAGAGGAAAAACAACGCATcctgaaagagaaagaagagaaaatacGCAAAGAACAACAGGAATTGGAGAGAAAACGTCAGGAAGAATCCGAAAATCTGATGAAGAAAATGTATGAACCACTtcaggctgagagagagagggagaagaaagagagagaggaggagaggaagagggagagggagaaaatagagagggagaggatgaggcagagggaggaa

Function

NR:

description
PREDICTED: GTPase IMAP family member 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799447.1 True 894 mRNA 0.47 2 39905690 39918513

Neighbor

gene id symbol gene type direction distance location
LOC120558740 NA coding upstream 8204 39895965 ~ 39897486 (+)
LOC120558738 LOC101484296,LOC106675709 coding upstream 94286 39808863 ~ 39811404 (+)
LOC120558742 NA coding upstream 145543 39754539 ~ 39760147 (+)
bcap31 bcap31,LOC102784580 coding upstream 591961 39282009 ~ 39313729 (+)
slc35a2 NA coding upstream 659654 39207730 ~ 39246036 (+)
ptpn18 NA coding downstream 241494 40160007 ~ 40186156 (+)
hm13 hm13,LOC102793025 coding downstream 511602 40430115 ~ 40451414 (+)
LOC120559775 NA coding downstream 546038 40464551 ~ 40464926 (+)
LOC120559596 NA coding downstream 550770 40469283 ~ 40469564 (+)
LOC120559068 NA coding downstream 578336 40496849 ~ 40515023 (+)
G56136 NA non-coding upstream 89400 39723782 ~ 39816290 (+)
G56138 NA non-coding upstream 140757 39746452 ~ 39764933 (+)
LOC120558745 NA non-coding upstream 161520 39656666 ~ 39744170 (+)
G56133 NA non-coding upstream 163126 39690778 ~ 39742564 (+)
LOC120558746 NA non-coding upstream 241511 39658758 ~ 39664179 (+)
G56808 NA non-coding downstream 107796 40026309 ~ 40026733 (+)
G56811 NA non-coding downstream 115108 40033621 ~ 40038323 (+)
G56810 gripap1 non-coding downstream 120134 40038647 ~ 40044842 (+)
G56812 NA non-coding downstream 125411 40043924 ~ 40044615 (+)
G56827 NA non-coding downstream 211927 40130440 ~ 40285378 (+)
G56112 NA other upstream 341422 39523146 ~ 39564268 (+)
G56072 NA other upstream 635262 39182501 ~ 39270428 (+)
si:ch211-180f4.1 LOC103365591,LOC102308931 other upstream 749518 39097131 ~ 39156172 (+)
LOC120559065 LOC107695300,LOC103365588,LOC101480057,LOC102306209,LOC102203592,LOC103460216,LOC101079199 other upstream 822194 38972410 ~ 39083496 (+)
G56035 NA other upstream 1025308 38879016 ~ 38880382 (+)
G56807 NA other downstream 98472 40016985 ~ 40017315 (+)
G56818 NA other downstream 183872 40102385 ~ 40148620 (+)
G56819 NA other downstream 191945 40110458 ~ 40111288 (+)
G56847 NA other downstream 467815 40386328 ~ 40488120 (+)
LOC120559073 NA other downstream 1181394 41099907 ~ 41103714 (+)

Expression


Co-expression Network