dhx35 (dhx35,LOC102790768)


Basic Information

Item Value
gene id dhx35
gene name dhx35,LOC102790768
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18603644 ~ 18611600 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799494.1
atggcggctcCCCTTTCCACGATGAAATTTTGGAAGCCGGGGTCTGAGGCTCCGGGAATCTCAGAGGAGCGGGAGctcaacacagagacaaccGGCTCCCCCATCATCTTCAACCCGCACACAGCCCTCTCCATAGAGAAACAACGACAGAAACTCCCTGTTTTCAAGCACAGAAACAATATCTTGTACTTGGTGGAGAGCTTCCAGACTGTCATCATAGTTGGTGAGACAGGATGTGGGAAAACAACGCAGTTACCTCAGTACCTGCTGGAGGCTGGCTGGGCGACGGAGGGGAAGGTGATTGGAGTGACACAGCCTCGGCGTGTGGCTGCCATCTCTGTAGCTAACCGTGTAGCAGAGGAGCGGGGGGCCCTGGTGGGACATGAGGTGGGCTACACCATCCGATTTGATGACTGCTCTGATCCCCACGCCACAAGGATCAAGTTCCTTACAGATGGCATGCTGGTGCGGGAGATGATGGCTGATCCTCTTTTGAAAAAATACAGTGTGTTGATGCTGGACGAAGCACATGAGAGAACCATGTATACAGACATAGCCATTGGCCTACTAAAGAAGATTCAGAAAAAGCGGCAAGACCTGAGGCTGATTGTGGCCTCTGCCACTCTGGATGCCAAGAAATTCCACGACTTCTTCAACCTGAACGAGTCCGGGGATCCTAACAAGGACACGTGTGGAATTCTGACAGTGGAGGGACGTACCTTTCCAGTGGATGTCTTCTACACTGTCAGTCCTGTCCCAGACTATGTGAAGGCCACAGTCGAGACCGTGCTCAAGATCCATGAGACAGAGGATGACGGAGACGTCCTGGCTTTTCTTACTGGGCAGGAAGAGGTGGAGAAAGTGGTGTCCCTTCTGCAGGACCAGGCCAGGTCTCTGTCACGATACGGCATGAAGAAACACCTGAGAATTTTGCCCATGTACTCTGGTCTACCTTACGCTGAGCAGATGAAGGTCTTTGAGAGGACACCCAACTCTGTTCGcaagGTTGTGGTGGCCACGAACATAGCTGAGACCTCCATCACCATAAATGGAGTTGTATTTGTCATTGACTGTGCATTTGTGAAGCTGCGGGCCTACAACCCTCGCACTGCCATTGAATCACTGGTGGTTACTCCCATCTCCAAGGCTTCAGCCAGCCAGAGGGCTGGGAGAGCCGGACGAAACCGACCTGGGAAATGCTTTAGACTATACACAGAGGAGGACTTTGAGAAACTGCCTGCCTCTACTGTGCCAGAGATGCAGCGCACCAATTTGGCCCCTGTCATCCTGCAGCTCAAAGCATTAGGCATTGACAACGTGCTGCGGTTCAGCTTCCTTTCTCCTCCTCCAGCTCAGACCATGGTTCAGGCTCTAGAGCTGCTCTACGCTCTGGGAGGTCTGGACCATTACGGACGTTTGACTGATCCCATGGGTGTGCGGATGGCAGAGTTTCCTCTCAGTCCCATGTTTGCCAAGATGCTCCTTGAGTCAGGAAACTTTGGCTGCTCCAAAGAGATTGTTACCATTGCAGCAATGATGCAGATTCAGAATATATTTGTTGTGCCGTCCAATCAGAAGAAAGCTGCTGCCCGAGAGCACAGGAAGTTTGCAGTTGCTGAGGGAGACCACCTCACCATGCTGAATGTGTACGAAGCATTCATTAAGCACCAGAAAAGCTCCCAGTGGTGTCAGGAACACTTCCTCAATTATAAGGGTCTGCTGCGGGCTGTGACCGTACGAGAGCAGCTCCGGCGTCTCATGAACAAGTTCAAGGTGCCACGGACTTCAAGTGAAGGCGACCCTGATGTGATCTTGAAGTGCATTGTATATGGGTTTTTCGCGAATGCAGCCCGCATCCACCATTCTGGTTCCTACCGGACTTTACGAGACGATCGCGAGCTTCACATCCACCCCAACTCTGTGCTGTTTGGAGAGAAACCTCCAAAATGGGTTGTTTTCAACGAAGTGGTGCAGACGGCAAAATACTACATGCGCGACGTGACCGCTGTGGAGTCGTCCTGGTTGGTCGAGTTGGCCCCTCACTTTTACAAGCAGGCCAAGCATGGCTCACTGGCTAGCAAGAGGTCCCGGGTCCTCTGAATCTAACCATCCCTTCATCGTGTTAAGACAGGAAGACTCATTGCATTAAAAGGAGAAACACCCTCTGAAATTGCCACTGTGCCCCTCTCCATTTCATTGTATATAAAAGTGTAATATATATTTGTTGTCCATGTCCACCCACACAACCCCTCCACACTATGTGGCCATGTTAGAATGGGATTAAGTGGATACATTGTTAGCGTTGAGATTAACGCACGtgacttcatttaaaagcatCTGTCTTTTTTGGCAGTGATGTGGTTTACATGTGATCTGCGAGAGTAAATAGTGATGAATGTGAGATGAGACCAGGCTGTGTCTGACCACTGTCCAATCAAGTATGGCCACATAGTTCACTTCATTCATACTTGTACATAGTCAGAGCAGGCTCAGGTCCAGGGAACGGCTCGTGTGCCACAGGCCCCGTCCACACCTGGTTCTTggcttcattatttttttaattgctgtATTTTTCTGCTGCATGATAAATAATGGAAGGCAATGGTATGTGAGGATGATTCCCTTTGAGAGACTTATAGCTTAGTTTTTTGGGTTAATTGCCCCCAATAGCCTGGGTTTGGCCTGGTTTATAGCTTTGTTTTTAACTGGTTTACTTTATCTCCAATTTAATTTAGATTTGTTAACTATCTGTACATTCACACAGGATGTAGTGGTATATATTTTCAGGAAGGAAACATGTCTATCTTTTTGGTCTAATAATGATACTGTGAAAAGACTTTACTTTTTGATCCTGGTTTTCCACTGTATTGTCACTTTACTACAGTCTAGCGCCGACATAGTGGCCTTGTCACCACTCTGTGCCAATTTTTCTTTATAAGCCTATTTCACATTTCACCCAAGCATTGTAAATGAAAAGCTGTGAAATCAAAAATGAAGTGCCATTTTGTTCCTGTGATGACAAAGTGCATTAAGAGCCTCAAAGAAACAGTAGCATTTATCCGATTTCAGCCATCATAATTGCCTTTCTTCGTACGATTTTTGAGCAAGAACTTATTGTACTTTTTGTCCCGTTACCATTAACATCATCTACCAGGTGTTCAGAAAAATGGCCAATTGTTTGTGATTTACATTCCATATTCAATGCATGTGTTCTGCATTTCCccgtttttgttttctttatggtttttgtttttcttcagagGTATTTGGCCCTGACAGCGTCAGTAAGCAGTATATTAAAGGTTTGTCATTTGCTTTCAAACAAGTAAGGTCACTGTCACCAAATTTTCACTTCTGCCTGCATGTTTTTTTGTAGATCTTGTTCTTGAGGTTACTACTGTAGGTAGATTCAGTGAAACTGTAATCAAACCACAGAACAACTTGCCATTTCATAAATAGGTAAACCAACTCAAATTAAATGGATATACAAATGGATTACCTTTGCATGTTAAATGGTACTCTAATGTAGACGataaacattacacattacgatCACCTTGTAGGACATATtgcaaatgaaaacattgacaTGTTTATCCTTGTTTTTGCTGATACTGAGTATGTATGCAGCCAAAGCAGTAATCTGTAGACCTGTGTAATTGCTCACCTTTGAGATAAAAACTATCACCTGCCATTTATTCCTCACATCCTCAAATAAAGCCTTATTGGTCATGCACTGAG

Function

symbol description
dhx35 Predicted to enable RNA binding activity. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human DHX35 (DEAH-box helicase 35).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DHX35

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13117 DHX35; ATP-dependent RNA helicase DDX35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799494.1 True 3741 mRNA 0.46 21 18603644 18611600

Neighbor

gene id symbol gene type direction distance location
spata2 spata2 coding downstream 263053 18335401 ~ 18340591 (-)
b4galt5 b4galt5,LOC104935810,LOC102792691,LOC100696774 coding downstream 413429 18160174 ~ 18190215 (-)
znf512b znf512b coding downstream 632731 17936494 ~ 17970913 (-)
uckl1b uckl1,LOC102795005,LOC103372048 coding downstream 667973 17915256 ~ 17935671 (-)
nkain4 nkain4,LOC106924573 coding downstream 866816 17689955 ~ 17736828 (-)
rab5if c10h20orf24,LOC104925093,LOC102790476,LOC103366025,LOC101470883 coding upstream 1729 18613329 ~ 18618762 (-)
plcg1 plcg1 coding upstream 24975 18636575 ~ 18668749 (-)
top1 LOC103366028 coding upstream 59074 18670674 ~ 18686422 (-)
ncoa6 ncoa6 coding upstream 75173 18686773 ~ 18700011 (-)
LOC120558485 ggt7 coding upstream 88725 18700325 ~ 18711876 (-)
G50945 NA non-coding downstream 98628 18504469 ~ 18505016 (-)
G50941 NA non-coding downstream 127932 18474909 ~ 18475712 (-)
G50932 NA non-coding downstream 235274 18368027 ~ 18368370 (-)
G50915 NA non-coding downstream 284039 18319313 ~ 18319605 (-)
G50912 NA non-coding downstream 287791 18315592 ~ 18315853 (-)
G50991 NA non-coding upstream 22865 18634465 ~ 18635235 (-)
G51064 NA non-coding upstream 101075 18712675 ~ 18713213 (-)
G51068 sna2 non-coding upstream 126883 18738483 ~ 18740343 (-)
G51069 NA non-coding upstream 146442 18758042 ~ 18758501 (-)
G51088 NA non-coding upstream 311263 18922863 ~ 18928835 (-)
samd10b samd10,LOC107570869 other downstream 502072 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 708562 17835080 ~ 17895082 (-)
G50712 birc7 other downstream 913884 17688115 ~ 17689760 (-)
LOC120559328 smim4 other downstream 1488597 17106834 ~ 17115047 (-)
G50217 fgd3,LOC104966710 other downstream 2319788 16281044 ~ 16283856 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 263155 18874755 ~ 18886895 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 334368 18945968 ~ 19077781 (-)
LOC120558911 LOC103362803,LOC100693258 other upstream 1187605 19799205 ~ 19815318 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 2208571 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 2556304 21167904 ~ 21199043 (-)

Expression


Co-expression Network