top1 (LOC103366028)


Basic Information

Item Value
gene id top1
gene name LOC103366028
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18670674 ~ 18686422 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799502.1
GCAGTCAGTAAATGTTGGGACTCCATTCCAGTTCCAGTCTGTCAGTTAGGGTTCCCTGAGCCTCGCATCCTGAACAGCTGTCTACTGTGATAACTTCACCTGctttataaacaaaaacaacttggCCATGAGCGGAGAGCATGGACATGGAAACTCTCAGGTCAATTCTGGATCTAAAGGAGGCGACACCCACAAACATAAAGACAAGCACAAAGACAAGGAATACAGACACAAAGACCacaagaaagacaaagagagagagaaattcaaGCACAGCAACAGCGAACATAAGGACCACTCTGagaagaaacacagagacaaagagaagcTGAAGCACAGCGACGGCAGCTCAGACAAGCACAGGgaaaaacacaaagagaaagacaaggacaaagagaagaggagagaagagaagATCAGGTCATCCCATGTAGACAAGcctaaaaaagagaaagaaaatggaTATGTAAGAGATACAAGCCCTTCTGCCATTAAGAGCGAGCCTGAAGAAGACAATGGCTTCTACCCTTCTCCCCAACACAACAAGACCTCCAAACGGGAATATGATGATGAAGAatttgtaTACAAGCCCAAAAAAGTCAAGACAGAGCATGACAAAAAGGCCAAGAAGAGGAAACATGAGTATGAagatgatgaggaggatgagGACATCAAGcccaaaaagaagacaaaagacAAGAAGGGAACAGAAGGAAAGAAAGccaagaaagaagaagaggagaagtgGAAATGGTGGGAGGAGGAAAGATCTACAGATGGATCCAAATGGCGCTTCCTTGAGCATAAGGGTCCAGTGTTTGCCCCTCCGTATGAACCTATGCCTGACAAAGTCAAATTTTACTATGATGGTAAGCCTATGAAACTCAGTGCTCCTGCTGAGGAGGTAGCTACATTTTTTGCCAAGATGTTGGATCATGAGTACACCACTAAGGACATCTTCAGGAAGAACTTCTTTAAGGACTGGAGGAAGgaaatgacatcCGAGGAGAAGTCAAAGATCACCGACCTGAACAAGTGCAACTTCAGTGAGATGAATGAATACTTCAAGGCCCAATCAGAAGCTAGGAAACAGATGTCAAAAGAGGAGAAACAGAAAATCAAAGAGGAGAATGAGAGACTCCTCCAGGAGTACGGTTTCTGCTTAATGGACAACCACAAGGAAAGGATCGGAAACTTCCGCATCGAGCCACCAGGCCTGTTCCGAGGACGAGGCGATCATCCGAAGATGGGCATGCTGAAACGACGCATCAGACCTGAAGACATCATTATTAACTGTAGCAAGGATTCGAAGCACCCTAAACCTCCCCCAGGAACAAAATGGAAGGAAGTTCGCCATGACAACAAGGTAACCTGGCTGGCATCCTGGACAGAGAACATTCAGGGCTCCATCAAGTACATCATGTTGAATCCCAGCTCCAGGATCAAGGGGGAGAAGGACTGGCAGAAGTATGAGACTGCTCGGCGGCTGAAGAAGTGTGTAGATCGCATTCGTAATCAGTATAGAGACGACTGGAAGTCAAAAGAGATGAGGATCAGGCAGAGAGCTGTGGCACTGTATTTCATAGACAAGCTTGCACTGAGGGCGGGCAACGAAAAGGAGGAAGGTGAGACAGCAGACACAGTTGGCTGCTGTTCGCTGCGGGTGGAGCACATCAAACTGTACCCCAAGATGGACGACCAGGAGTATGTTGTGGAGTTTGACTTCTTGGGAAAAGACTCCATCCGTTACTACAACAAGATCCCCGTGGAGAAGAGGGTCTTTAAAAACCTCCAGCTGTTCCTAGAGAACAAGCAGCCTGAAGATGACCTCTTTGACAGACTGAATACTTCTATTCTGAATAAGCACTTACAGGAGCTGATGGATGGCCTGACAGCCAAGGTCTTTCGTACCTACAATGCCTCCATCACCCTGCAACAGCAGCTCAAAGAACTTGCCTGCCCGGATGACAGCCTCCCAGCTAAAATCCTGTCATACAACCGTGCCAACCGGGCGGTGGCCATCCTCTGTAACCATCAGAGAGCTCCACCCAAAACATTTGAGAAGTCCATGCAAAACCTTCAGACCAAGATCGACGAGAAACAGAATCAACTGTCAGCAGCCAGGAAGCAGCTGAAGGCCGCCAAGGCTGATCACAAGGCTTCCCATGATGACAAGAGCAAAAAGGCTGTGGAGTTGAAGCGTAAAGCTATCCAGAGGATAGAGGAGCAGCTGATGAAGCTCCAGGTTCAGGccacagacagagaggagaatAAACAGATTGCTCTGGGCACCTCCAAGCTCAACTATCTGGATCCACGCATCTCTGTTGCTTGGTGCAAGAAATGGGATGTTCCCATTGAGAAGATCTACAACAAAACCCAGAGAGAGAAGTTTGCCTGGGCGATTGACATGGCTGAAAAGGACTATGAGTTTTAAACACACTTAATGTTTTACCTTTTCTAAATATGCCTTTGATTGTAGAGATGGTTTGTAGTAGATGTCAAATGATTCCACtgtgtggttactgcagggctGTGAGGACAAAGCTTTGTTGGAACTGTGACCACAGTTTAATAATtgtgctgtatatatatatgaattggCTGTGAATATAGGAAAATAACTCCTAAACCATTTGACCAAGCTGCTAAAGGGCAactcactttaaaaaaacaaaatgacagtAGTGTGTATGTAGCTGCAGCTGTCCACGATCAAACACCTATATACACATTAGTATTATATTTAGTCAGACACAACTGTACTGAAATTTGTAAGCCATCAGACTTATTGAGACATTCTATATTGTCATagaataatgaaataataaatgtttGTATGGGAGACTGTGAAGAACGACGAGAGATAATAGGATGAATTTCAATTTGTGGAATTGTGTGAAAGATTGGTACAATAAAATTACAGACTGATGACAGTGTGAAGAATATAAAACTCTAGCACTATGCTTATATAATTATTAGCACACATGTCATCTTTTTTCCATTAAGTTTGATTATGTTGTTTATTTCAGGGATGTAcatattttagtcatttttagtATCTATGATTTAgtgttttataaaatgtgtgCTATATGCATTGTCAACAAGAAGCTCTTCATTGTTCATatgcaatgtgtgtgtatctgttttcaCAGTTTCACAATGGTAACATTCCTCTTGGTTACTTGAAGCAGCTGAAGTAAAGCATCATGTTTTGTGTGCCAGTGCTAAAAGAGACTGTTCCTTCAGACAGAGACATTTTCTTAGAGGGATGTGGATTTTGCCAAAAAATATCACAGAAGTCTATCATTGTAGTGTGCTGTTTGTATTGCTGTGATTAAGCAGAAAGTGGCCTCCTTAATTTCCAAATGTGAATGGATATTCTAACTTTTGTCATTAATATTTCTTGCTatttgattatttatcacacGACTCCAGATTGGTTGAATGCTTATTGTTTTGAGCTTTGTAGTTTTCAGAATAAAACATCAACCTTGT

Function

NR:

description
PREDICTED: DNA topoisomerase 1-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03163 TOP1; DNA topoisomerase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799502.1 True 3501 mRNA 0.43 21 18670674 18686422

Neighbor

gene id symbol gene type direction distance location
plcg1 plcg1 coding downstream 1925 18636575 ~ 18668749 (-)
rab5if c10h20orf24,LOC104925093,LOC102790476,LOC103366025,LOC101470883 coding downstream 51912 18613329 ~ 18618762 (-)
dhx35 dhx35,LOC102790768 coding downstream 59074 18603644 ~ 18611600 (-)
spata2 spata2 coding downstream 330083 18335401 ~ 18340591 (-)
b4galt5 b4galt5,LOC104935810,LOC102792691,LOC100696774 coding downstream 480459 18160174 ~ 18190215 (-)
ncoa6 ncoa6 coding upstream 351 18686773 ~ 18700011 (-)
LOC120558485 ggt7 coding upstream 13903 18700325 ~ 18711876 (-)
LOC120558486 tp53inp2 coding upstream 27204 18713626 ~ 18723209 (-)
samhd1 samhd1 coding upstream 89328 18775750 ~ 18787283 (-)
LOC120559673 LOC104946588,LOC103370859 coding upstream 115525 18801947 ~ 18817830 (-)
G50991 NA non-coding downstream 35439 18634465 ~ 18635235 (-)
G50945 NA non-coding downstream 165658 18504469 ~ 18505016 (-)
G50941 NA non-coding downstream 194962 18474909 ~ 18475712 (-)
G50932 NA non-coding downstream 302304 18368027 ~ 18368370 (-)
G50915 NA non-coding downstream 351069 18319313 ~ 18319605 (-)
G51064 NA non-coding upstream 26253 18712675 ~ 18713213 (-)
G51068 sna2 non-coding upstream 52061 18738483 ~ 18740343 (-)
G51069 NA non-coding upstream 71620 18758042 ~ 18758501 (-)
G51088 NA non-coding upstream 236441 18922863 ~ 18928835 (-)
G51122 apeh,LOC103467450 non-coding upstream 540899 19227321 ~ 19227905 (-)
samd10b samd10,LOC107570869 other downstream 569102 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 775592 17835080 ~ 17895082 (-)
G50712 birc7 other downstream 980914 17688115 ~ 17689760 (-)
LOC120559328 smim4 other downstream 1555627 17106834 ~ 17115047 (-)
G50217 fgd3,LOC104966710 other downstream 2386818 16281044 ~ 16283856 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 188333 18874755 ~ 18886895 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 259546 18945968 ~ 19077781 (-)
LOC120558911 LOC103362803,LOC100693258 other upstream 1112783 19799205 ~ 19815318 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 2133749 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 2481482 21167904 ~ 21199043 (-)

Expression


Co-expression Network