slc48a1a (slc48a1,LOC101074998)


Basic Information

Item Value
gene id slc48a1a
gene name slc48a1,LOC101074998
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11348286 ~ 11360195 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799551.1
GATGACTTTGCGGTAAATTGTTGAAAACACACTCGCAACATATTGGTCAATATCAACTATGTTGTATTTCAAGTGTTTTATGACCGTGAAGTACATGTAACCGAAGACAGTCCCCACGGGTATGTTTCGGCATCGGCTGAAGACGGGGATCCACGGTCGGGGTGTTTTCTGGATCATAACCATCTGCCATCTTTGCGGTGTACATCAGATAAACACTTGGTTGCTGTTTAGCTGCTGCCTGTTAGCTTGAAATCTAAATTATGTCATCGGAGTTTGTTGCTTGTATCAGGTACACGAACAGGCTATTACTTAACTAGCTTTTTCTAAAGCTAGTCTTGCTAGCAGTGATAGGCGTCGTTCTCCCTAACGTTAGTCCAGGGGAATTTGCTGTTGTCGTTTTCCTTTCGTTTGTATCAGTGATATTACATAATGAGGCGGTAAGCTTGTTGATGTAGCTAGCTTAATATACCTACGCCATACTTAACGCCTGTTACAAACATTTTGGGAGGCAGTAGGCTAATTGTATTTTACAATGGGAGGCAGCAGAATTTACATTAGCATAGGATATGCTACCTTTGGCACCATGGTTGGACTTTCGGCTTTCCTGGTCTGGAATATAGCATACAAACAGCCATGGACTGCGGCCATGGGAGGCCTGTCAGGAGTTTTGGCGCTCTGGTGTCTTGTCACACACATCATGTACCTGCAGGATTTCTGGCGCACCTGGCTCAAAGGCCTCAAGTTCTTCATCGCTGTTGGTGTGCTCTTCTCAGTTTTTGCAGTGACCACTTTCATTACCTTCCTAACTCTCGCCATCACACAGAAGCAATCTCCGACTGACCCGAGGAGCCTCTATCTCTCCTGTGTGTGGAGCTTCCTGACTCTGAAATGGTCCTTTCTCCTGGCCTTATACTCCTACAGATATCGCCAGGAGTTTGCAGACATCAGCATCCTCAGCGATTTCTAGTCAGTACTGGTTTTATAGTCTGCAATGGACTTTGGGGAGTTTTAAGCTGCCAGCAGGAGCTGGTCAAAGAGCTTTTGTAACAAAGAGGAGGAAAAGCAGACAAGGCTAGATTTAAAAGGTCATCTGACTCTTACTATATGGAGTTGCACTTGCTTAAACTCTGTATTTGTATTGTTACCTGTTCTCCTACTTTTAATGACCCGGATACTATATTCCTGTAAGTAGCCATAAGTCTAAACCTCTGAAGACTGGAACTGGTTTTGGATTGATTGCTTGAGGCTGTTTATCGAGAGACATGCTCTTCAGACAGATTTTATCATGAGATTGTTTAATCTTAAAACGGCTAACGCATACAAGGAAATCCCCACCATAACAGGCGTTTAATCAAATAAGTTGttaaagtgaaagtgaaaataCTCCCAAAAGCCGAAATCCTCAGAACCAAAACTAAAACCTCCTACCTGAAGCCACTCTGCTAATTGGCTGACGGTGTTTGTTAGAGTGCTTGAATGTTTGTACGCAAATTAGCTTTTTCAGAGTTGCAGTCTTGAACCACAGAATACTCTCGTCACTAGTGTCTGCAAAATTGGTCTCTTAGCTCCCTTTCATCGTCAATGAAGCAGTTTGGGAaaccatttctttctttttttttaaatccattcaCCAATATGAATATATTGAATTCTCATTCAAAGCTTTCTAGATATGGTAGTTAATGTACTTACTTTCTCCCTTCATACCCTGCTTCTCTTTTAGTAGAATTGAAGAAAGGGCATTCCTGTGGAATTTGTGCTTTTCATGTTTATTTCCACCAGGGGGAGACATTTTTCAGTCAAGAGTCCACTGGAAAATTATGACATTCCTTTTTAGGAGAACGCAAATGAATTTGAAAAATGATTGCACTTTAGTCTTTCATATTGATGCCAATGTTTTACACTCAAATCCTAATACAATGGAATAATCCTTTTACATGGCCGTCTCTGTCTCacccttttttaaatgttgaaagATAATATAtgtatcatttattttactgttagtATGATTTGTGTAAGTCAAGTCAAACTAGGCTGTGTAAGTGGTTAAGTCCCAGCTGTTCCTCATGTCTGCCTGCTaccacaaaaatgtttaaatgtatttttgttgttgagagATTATGAATGTGAGGGATTATGAATGCGAGGATGCTACATGTAAATAGAAACTGAACCCATTAAAGTTGCATTCATCGGTAATTA
>XM_039799552.1
GAACAGGCTTCCAGGATTCTCAAGCATCTTTCTGAAAGGATTAACAAGCGTCAAGGCAGCAGGACAACGCGATAAAGTTGCAAGGCTAAAGTTGGGCAAACATGCTAACGTTACACAAACTAGGCCTACGTTAACGTTACAAACAGGGGTTGAGCAGTATAATCAAATCGGTGAGAAATGGGAACAGGAGTTTTGGCGCTCTGGTGTCTTGTCACACACATCATGTACCTGCAGGATTTCTGGCGCACCTGGCTCAAAGGCCTCAAGTTCTTCATCGCTGTTGGTGTGCTCTTCTCAGTTTTTGCAGTGACCACTTTCATTACCTTCCTAACTCTCGCCATCACACAGAAGCAATCTCCGACTGACCCGAGGAGCCTCTATCTCTCCTGTGTGTGGAGCTTCCTGACTCTGAAATGGTCCTTTCTCCTGGCCTTATACTCCTACAGATATCGCCAGGAGTTTGCAGACATCAGCATCCTCAGCGATTTCTAGTCAGTACTGGTTTTATAGTCTGCAATGGACTTTGGGGAGTTTTAAGCTGCCAGCAGGAGCTGGTCAAAGAGCTTTTGTAACAAAGAGGAGGAAAAGCAGACAAGGCTAGATTTAAAAGGTCATCTGACTCTTACTATATGGAGTTGCACTTGCTTAAACTCTGTATTTGTATTGTTACCTGTTCTCCTACTTTTAATGACCCGGATACTATATTCCTGTAAGTAGCCATAAGTCTAAACCTCTGAAGACTGGAACTGGTTTTGGATTGATTGCTTGAGGCTGTTTATCGAGAGACATGCTCTTCAGACAGATTTTATCATGAGATTGTTTAATCTTAAAACGGCTAACGCATACAAGGAAATCCCCACCATAACAGGCGTTTAATCAAATAAGTTGttaaagtgaaagtgaaaataCTCCCAAAAGCCGAAATCCTCAGAACCAAAACTAAAACCTCCTACCTGAAGCCACTCTGCTAATTGGCTGACGGTGTTTGTTAGAGTGCTTGAATGTTTGTACGCAAATTAGCTTTTTCAGAGTTGCAGTCTTGAACCACAGAATACTCTCGTCACTAGTGTCTGCAAAATTGGTCTCTTAGCTCCCTTTCATCGTCAATGAAGCAGTTTGGGAaaccatttctttctttttttttaaatccattcaCCAATATGAATATATTGAATTCTCATTCAAAGCTTTCTAGATATGGTAGTTAATGTACTTACTTTCTCCCTTCATACCCTGCTTCTCTTTTAGTAGAATTGAAGAAAGGGCATTCCTGTGGAATTTGTGCTTTTCATGTTTATTTCCACCAGGGGGAGACATTTTTCAGTCAAGAGTCCACTGGAAAATTATGACATTCCTTTTTAGGAGAACGCAAATGAATTTGAAAAATGATTGCACTTTAGTCTTTCATATTGATGCCAATGTTTTACACTCAAATCCTAATACAATGGAATAATCCTTTTACATGGCCGTCTCTGTCTCacccttttttaaatgttgaaagATAATATAtgtatcatttattttactgttagtATGATTTGTGTAAGTCAAGTCAAACTAGGCTGTGTAAGTGGTTAAGTCCCAGCTGTTCCTCATGTCTGCCTGCTaccacaaaaatgtttaaatgtatttttgttgttgagagATTATGAATGTGAGGGATTATGAATGCGAGGATGCTACATGTAAATAGAAACTGAACCCATTAAAGTTGCATTCATCGGTAATTA

Function

symbol description
slc48a1 Enables heme binding activity and heme transmembrane transporter activity. Involved in heme transport. Located in endosome membrane; lysosomal membrane; and plasma membrane.

NR:

description
heme transporter hrg1-B

GO:

id name namespace
GO:0015886 heme transport biological_process
GO:0015232 heme transmembrane transporter activity molecular_function

KEGG:

id description
K15380 SLC48A1, HRG1; solute carrier family 48 (heme transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799551.1 True 2205 mRNA 0.41 3 11348286 11351198
XM_039799552.1 False 1730 mRNA 0.40 3 11348286 11360195

Neighbor

gene id symbol gene type direction distance location
LOC120558517 slc26a9 coding downstream 39 11337607 ~ 11348247 (-)
plxna2 LOC101478991,LOC100710907,LOC102296543 coding downstream 218976 10909818 ~ 11129310 (-)
si:dkey-261h17.1 LOC100710642 coding downstream 441360 10867858 ~ 10906926 (-)
ptpn22 LOC106912495,LOC103467961 coding downstream 781811 10542933 ~ 10566475 (-)
si:ch73-206d17.1 NA coding downstream 1023075 10316819 ~ 10325211 (-)
itga5 LOC103365860,LOC103385260 coding upstream 21987 11382182 ~ 11421461 (-)
csrnp2 csrnp2,LOC102795091 coding upstream 95548 11455743 ~ 11464126 (-)
tfcp2 tfcp2 coding upstream 104303 11464498 ~ 11477916 (-)
pou6f1 pou6f1,LOC102796073 coding upstream 126870 11487065 ~ 11498064 (-)
bin2a LOC102783891 coding upstream 150538 11510733 ~ 11518488 (-)
G48761 NA non-coding downstream 126807 11220997 ~ 11221479 (-)
G48756 NA non-coding downstream 139669 11208394 ~ 11208617 (-)
G48749 NA non-coding downstream 198904 11149074 ~ 11149382 (-)
LOC120558410 NA non-coding downstream 483241 10834886 ~ 10865045 (-)
LOC120558409 NA non-coding downstream 637903 10709762 ~ 10710383 (-)
G48891 NA non-coding upstream 78077 11438272 ~ 11438701 (-)
G48903 LOC102783589,LOC107599367 non-coding upstream 203876 11564071 ~ 11572989 (-)
G48886 cs non-coding upstream 216344 11576539 ~ 11578988 (-)
G48907 ankrd52 non-coding upstream 240097 11600292 ~ 11600508 (-)
G48910 ankrd52 non-coding upstream 245538 11605733 ~ 11606614 (-)
G48697 NA other downstream 614399 10641405 ~ 10733887 (-)
G48523 NA other downstream 1322461 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 1563045 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 1594600 9727874 ~ 9753686 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other downstream 1624152 9689729 ~ 9724134 (-)
LOC120558961 NA other upstream 143632 11503827 ~ 11508337 (-)
srxn1 srxn1 other upstream 525770 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 599184 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 766691 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 787219 12147414 ~ 12169209 (-)

Expression


Co-expression Network