LOC120558584 (cdc42,LOC100697482,LOC101164400,LOC101073733,LOC107083933,LOC103465423,LOC100691174)


Basic Information

Item Value
gene id LOC120558584
gene name cdc42,LOC100697482,LOC101164400,LOC101073733,LOC107083933,LOC103465423,LOC100691174
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13243174 ~ 13249562 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799629.1
GTATTATTCTCTGTAGCTTGATAGTTGAAGTCTCAGCTTGTCACTGTAGCAAGTTGCTGATCGCTGGTGCCAACGCCCGGCGAaatatacagctaacgttagctagcggaGATACGGAGGGATATTGCTAACGTTATTGCCAGCAGAATCAGAAAGTACAGAGATGCAGACTATCAAATGTGTGGTGGTGGGTGATGGAGCAGTGGGAAAAACCTGCCTATTGATTTCATACACCACCAACAAATTCCCCTCTGAATATGTACCTACAGTTTTTGACAACTATGCAGTAACTGTAATGATTGGGGGTGAACCATACACCCTTGGCTTATTTGATACAGcagGTCAGGAGGATTATGACAGGTTACGACCACTAAGCTACCCACAGACAGATGTCTTCTTagtctgtttctctgttgttTCACCTTCCTCGTTTGAGAATGTTAAAGAAAAGTGGGTTCCTGAAATAACTCACCACTGTCCCAAGACCCCGTTCCTGTTGGTAGGCACTCAGATCGACCTGCGTGATGACCCCTCCACAGTGGAGAAGCTAGCCAAGAACAAACAGAAGCCAATCACCCCTGAGACAGCAGAAAAGCTGGCTCGTGACCTTAAGGCAGTCAAATATGTTGAGTGCTCAGCCCTAACACAGCGGGGACTGAAGAACGTATTTGATGAGGCTATCCTAGCCGCTTTAGAGCCCCCTGAAActcaaagaaagagaaaatgctGTTTGTTCTGATGTCTTCTGCATCTTGCTTTGCCTCTCGATTGTCTGCTGCTTACTCATTGTAAAGAGATGTCTGTCACTAAAATAACCACAACgctcttttaatctttaaaaactTTGTGCCCATtaacttttttccccctctgttCATGCGTGCTTTCTTTTCGACTTGGCCTAATCACAATGATCCATGCTGCCTGATATAACAAGAGTGCCAATCCATAGTTCTTCTGTCTGTGAAACTGGACAcggctgtgttttgtttttgttatttaaattgACATTCTGTTGTTATCTCAGAATTGAACTATTCAGCATCAGTTGTGCCCTACAAAGCTTTTATGCCACAACCTGTCTTAGAcagtgtattatttttttttttcccctactGAAGCATCAGCATTTCCCATGGGCTTTGGTCTTTACTCAGACAAGTTGATCATGAAGGAGTCTTGTATAACGTTATTTGAATAAAGGAAGATTTTGATCGCCCCTG
>XM_039799630.1
TTATTCTCTGTAGCTTGATAGTTGAAGTCTCAGCTTGTCACTGTAGCAAGTTGCTGATCGCTGGTGCCAACGCCCGGCGAaatatacagctaacgttagctagcggaGATACGGAGGGATATTGCAGCTAACGTTATTGCCAGCAGAATCAGAAAGTACAGAGATGCAGACTATCAAATGTGTGGTGGTGGGTGATGGAGCAGTGGGAAAAACCTGCCTATTGATTTCATACACCACCAACAAATTCCCCTCTGAATATGTACCTACAGTTTTTGACAACTATGCAGTAACTGTAATGATTGGGGGTGAACCATACACCCTTGGCTTATTTGATACAGcagGTCAGGAGGATTATGACAGGTTACGACCACTAAGCTACCCACAGACAGATGTCTTCTTagtctgtttctctgttgttTCACCTTCCTCGTTTGAGAATGTTAAAGAAAAGTGGGTTCCTGAAATAACTCACCACTGTCCCAAGACCCCGTTCCTGTTGGTAGGCACTCAGATCGACCTGCGTGATGACCCCTCCACAGTGGAGAAGCTAGCCAAGAACAAACAGAAGCCAATCACCCCTGAGACAGCAGAAAAGCTGGCTCGTGACCTTAAGGCAGTCAAATATGTTGAGTGCTCAGCCCTAACACAGCGGGGACTGAAGAACGTATTTGATGAGGCTATCCTAGCCGCTTTAGAGCCCCCTGAAActcaaagaaagagaaaatgctGTTTGTTCTGATGTCTTCTGCATCTTGCTTTGCCTCTCGATTGTCTGCTGCTTACTCATTGTAAAGAGATGTCTGTCACTAAAATAACCACAACgctcttttaatctttaaaaactTTGTGCCCATtaacttttttccccctctgttCATGCGTGCTTTCTTTTCGACTTGGCCTAATCACAATGATCCATGCTGCCTGATATAACAAGAGTGCCAATCCATAGTTCTTCTGTCTGTGAAACTGGACAcggctgtgttttgtttttgttatttaaattgACATTCTGTTGTTATCTCAGAATTGAACTATTCAGCATCAGTTGTGCCCTACAAAGCTTTTATGCCACAACCTGTCTTAGAcagtgtattatttttttttttcccctactGAAGCATCAGCATTTCCCATGGGCTTTGGTCTTTACTCAGACAAGTTGATCATGAAGGAGTCTTGTATAACGTTATTTGAATAAAGGAAGATTTTGATCGCCCCTG
>XM_039799631.1
GTATTATTCTCTGTAGCTTGATAGTTGAAGTCTCAGCTTGTCACTGTAGCAAGTTGCTGATCGCTGGTGCCAACGCCCGGCGAaatatacagctaacgttagctagcggaGATACGGAGGGATATTGCTAACGTTATTGCCAGCAGAATCAGAAAGTACAGAGATGCAGACTATCAAATGTGTGGTGGTGGGTGATGGAGCAGTGGGAAAAACCTGCCTATTGATTTCATACACCACCAACAAATTCCCCTCTGAATATGTACCTACAGTTTTTGACAACTATGCAGTAACTGTAATGATTGGGGGTGAACCATACACCCTTGGCTTATTTGATACAGcagGTCAGGAGGATTATGACAGGTTACGACCACTAAGCTACCCACAGACAGATGTCTTCTTagtctgtttctctgttgttTCACCTTCCTCGTTTGAGAATGTTAAAGAAAAGTGGGTTCCTGAAATAACTCACCACTGTCCCAAGACCCCGTTCCTGTTGGTAGGCACTCAGATCGACCTGCGTGATGACCCCTCCACAGTGGAGAAGCTAGCCAAGAACAAACAGAAGCCAATCACCCCTGAGACAGCAGAAAAGCTGGCTCGTGACCTTAAGGCAGTCAAATATGTTGAGTGCTCAGCCCTAACACAGAAAGGATTAAAGAATGTGTTTGATGAGGCAATACTGGCTGCCCTGGAGCCTCCTGAACCTAAGAAAAGACGTAAATGTGTTCTGCTCTAAGTGTCGTCGCAGCCTTCTCAACACCAGTTTCCAAATCTAGGTTAACAGTACTGAAGAGGTTTGTTGCACAAGCGCATTCCGACATGAGTTAATATATTATGAAATATTTGCCTTCTGACTGACTTAACCTAAATACATATTCAATGTGTTGAACGTGATTTTTAAGATTGAGTAACATTTGATGCTGTTTGTGATGATGTGATGGCATTGAAATGATCTTACATGTTGAATCAGTTTACAGTATATCAACAAACTGTAGGTGACATTTCAGTTAGACCACATTATGTTTAGAGTTAATTTTGCAGAAGTGCTATTCCAAAAGAACAGACTATGAAATGGTATTTTAATAGATCTCATGTTTTATTGACTGCCCTGTGAAACACGAACAAGCTGATAATGTTGGGTTAGTGAGCTACTCCAATTATGTCTTAGTGTACTCTacatctgattttttttattttttacttgtcAAGTAATTCCcttagtttttatatatatcgGCATAGAACGccagtattttgttttctaaacatttctttaagaatgatacatttttcaaaaggtCAATAGAAGTTGCTGTATTTTActcatttttgacattttgatatCTTCATGTTCATTGACAGCATAGCCTCCAGGGCGATCTAAGGAATATTTGACTGAATATGACATTTCTAGGCTATGCTCCATCATAGTTCTAGTTTGCCAAAACATAACCTGATAAATTGACACTTGTCAAAGTAGAGATCCACAAAGGCTGACAAATGATGGCAGAAATGTATGGAGTTTTAAATGCAACGTTAACACTTCATTGGAAGTCATTTATCACAAATAGCCAAGCAAGGAGTTGGAGCACAACAATTTCACAGTCATTTCCTTTTTCTGACAGGAGTGAGTTAACAAGAAGGTGATGTGTGCCCTGAATGCTTATCAACTGTTGCAATAGCTGAAACTTTGTAGGAGCATTCTGCTTATAACCCCAGGCTAATACACTATTTTGTAAACCGAACATACTTGCTGCTGAAGTCGGAAAGTAACACGTTGTGGCAGTTCTTACAAAATGCTATACATAGTTTGAAACCCTGTGAAGATTTTGGAATGACAGAACTAGCACCATTTGCATTTCTCTTGCCATGCCTGGATGATGGGCTTGAATTTGACTTGTAAATATAGTGAGAATAATTCATAACTTATTGACTGAATACAATGTGTCTGTTACTGATACAGATATGTAGAGGAGATGAGATGACAGTGAAATCAAAATGACCAGGAAAATGTTGAGAGAACAAGGACTCTTTGGTCTTTATTCAATTTGACATCAAAGTTGTTGTGTATCTTGCTTGTGATAAAGCAGTACAATAAACCAGTATTATGAATAAACCTAACTTCAAATACTA
>XM_039799632.1
ATAGTTGAAGTCTCAGCTTGTCACTGTAGCAAGTTGCTGATCGCTGGTGCCAACGCCCGGCGAaatatacagctaacgttagctagcggaGATACGGAGGGATATTGGTACGTAACATTTTCTGACGTCTCTACCTGCAGTTCGATTACAAATACAAGTTCGGATACGGTTTTCATGCTTCGTCTTGTTAGCTGGGACTCAGATACAGCAACAGCTAACGTTATTGCCAGCAGAATCAGAAAGTACAGAGATGCAGACTATCAAATGTGTGGTGGTGGGTGATGGAGCAGTGGGAAAAACCTGCCTATTGATTTCATACACCACCAACAAATTCCCCTCTGAATATGTACCTACAGTTTTTGACAACTATGCAGTAACTGTAATGATTGGGGGTGAACCATACACCCTTGGCTTATTTGATACAGcagGTCAGGAGGATTATGACAGGTTACGACCACTAAGCTACCCACAGACAGATGTCTTCTTagtctgtttctctgttgttTCACCTTCCTCGTTTGAGAATGTTAAAGAAAAGTGGGTTCCTGAAATAACTCACCACTGTCCCAAGACCCCGTTCCTGTTGGTAGGCACTCAGATCGACCTGCGTGATGACCCCTCCACAGTGGAGAAGCTAGCCAAGAACAAACAGAAGCCAATCACCCCTGAGACAGCAGAAAAGCTGGCTCGTGACCTTAAGGCAGTCAAATATGTTGAGTGCTCAGCCCTAACACAGCGGGGACTGAAGAACGTATTTGATGAGGCTATCCTAGCCGCTTTAGAGCCCCCTGAAActcaaagaaagagaaaatgctGTTTGTTCTGATGTCTTCTGCATCTTGCTTTGCCTCTCGATTGTCTGCTGCTTACTCATTGTAAAGAGATGTCTGTCACTAAAATAACCACAACgctcttttaatctttaaaaactTTGTGCCCATtaacttttttccccctctgttCATGCGTGCTTTCTTTTCGACTTGGCCTAATCACAATGATCCATGCTGCCTGATATAACAAGAGTGCCAATCCATAGTTCTTCTGTCTGTGAAACTGGACAcggctgtgttttgtttttgttatttaaattgACATTCTGTTGTTATCTCAGAATTGAACTATTCAGCATCAGTTGTGCCCTACAAAGCTTTTATGCCACAACCTGTCTTAGAcagtgtattatttttttttttcccctactGAAGCATCAGCATTTCCCATGGGCTTTGGTCTTTACTCAGACAAGTTGATCATGAAGGAGTCTTGTATAACGTTATTTGAATAAAGGAAGATTTTGATCGCCCCTG

Function

symbol description
cdc42 Predicted to enable GTP binding activity and GTPase activity. Involved in cell surface receptor signaling pathway; positive regulation of cell migration involved in sprouting angiogenesis; and positive regulation of filopodium assembly. Acts upstream of or within several processes, including camera-type eye development; melanosome transport; and plasma membrane bounded cell projection assembly. Predicted to be located in midbody and plasma membrane. Is expressed in blastodisc; brain; eye; and pronephros. Human ortholog(s) of this gene implicated in fibrosarcoma. Orthologous to human CDC42 (cell division cycle 42).

NR:

description
PREDICTED: cell division control protein 42 homolog isoform X2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799629.1 False 1223 mRNA 0.43 6 13244763 13249562
XM_039799630.1 False 1223 mRNA 0.43 6 13244763 13249559
XM_039799631.1 True 2136 mRNA 0.39 6 13243174 13249562
XM_039799632.1 False 1310 mRNA 0.43 6 13244763 13249542

Neighbor

gene id symbol gene type direction distance location
dhfr dhfr,LOC103371587 coding downstream 6064 13236216 ~ 13237110 (-)
ccdc187 LOC103354907 coding downstream 328091 12896793 ~ 12915083 (-)
apex2 apex2 coding downstream 498852 12740741 ~ 12744322 (-)
LOC120559801 slc38a5,LOC104951559 coding downstream 503350 12729392 ~ 12739824 (-)
wasb was coding downstream 514405 12722054 ~ 12728769 (-)
mfsd4ab mfsd4a,LOC105928558 coding upstream 9763 13259325 ~ 13262798 (-)
LOC120559884 NA coding upstream 42952 13292514 ~ 13299992 (-)
LOC120559881 NA coding upstream 58026 13307588 ~ 13328250 (-)
LOC120559526 NA coding upstream 89931 13339493 ~ 13343953 (-)
LOC120558460 NA coding upstream 146454 13396016 ~ 13406184 (-)
G49407 NA non-coding downstream 318846 12921001 ~ 12924328 (-)
G49384 NA non-coding downstream 404042 12837520 ~ 12839132 (-)
G49374 nt5dc2,LOC102799881 non-coding downstream 463854 12775917 ~ 12779320 (-)
G49372 NA non-coding downstream 471755 12768820 ~ 12771419 (-)
G49307 NA non-coding downstream 539069 12700429 ~ 12704105 (-)
G49447 LOC104955234 non-coding upstream 32425 13281987 ~ 13284250 (-)
LOC120558463 NA non-coding upstream 105555 13355117 ~ 13357805 (-)
LOC120558462 NA non-coding upstream 116701 13366263 ~ 13368373 (-)
LOC120558464 NA non-coding upstream 127065 13376627 ~ 13378863 (-)
G49514 NA non-coding upstream 182957 13432519 ~ 13433095 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other downstream 21836 12924458 ~ 13221338 (-)
prickle3 prickle3,LOC102790576 other downstream 803265 12415603 ~ 12439909 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other downstream 851497 12388981 ~ 12391677 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 1020146 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 1073965 12147414 ~ 12169209 (-)
LOC120558587 NA other upstream 1424 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 58798 13308360 ~ 13312729 (-)
LOC120558461 NA other upstream 157223 13406785 ~ 13413178 (-)
zgc:66479 NA other upstream 497841 13747403 ~ 13753866 (-)
smim29 LOC104942556,LOC104932788,LOC105416285,LOC106572343,LOC105022745 other upstream 790173 14039735 ~ 14125823 (-)

Expression


Co-expression Network