LOC120558638 (LOC104967523)


Basic Information

Item Value
gene id LOC120558638
gene name LOC104967523
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22092506 ~ 22103785 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799722.1
atgagttcCACTCCACCCACATCCATCCGTGTCCAATGTGAGGGGGAGGTGAAACAGTTGAGAGCTTACTGTGCTATTAACTGGCATTATTTAGTTGCCTCAGTCTGGAGAAGAAACAAGTCAGGACTGTTCCCACCAgAATTCCACCCAGTAGGAGCAACAATGACTTCCCATGTAAAACTCCGGAAGGAGAGGGTTGGTATGGTGGACTACGACACACAAAtcaaagAGGTCCGTTGCCAGCTTGTAGACCAATTGAAGGTGTTAGACTTGCAACTTGAGCAGAAGAGCCAGCAGCTGCAGGATCTGACGGACTACCTGCGGCGCCGGGGTGAAATTGAAAGCGAGTATGCACGCTCCCTGGAAAAACTTGCTGAAAGGTTCACTTCCAGGATCAAGAGGAAGGAGCCCAGTAGTAATTCGGTGGCCCAGGTCTGGCTGGCTATGCTATCCCAGACCCGCCAAGAAAGTAGGGACCACAATGGACTGAGTGAGTGCTGCAGCACCTTCCTCATCCAGCCTCTCACACACTGCCTGGAGTACACACAGCGCCTTGCCAAGAAGAGTAAAGACATCTGCACTCAGCTACAAGATGGACTACTCAAGGTTACCACAGAGCTACAGACTGCATGGCGGACATACTACCAGTACCACTCAGACTATGTGTGTGCAGAGGGCAAGctaaaggaggcagagaaaCAAGAGGAAAAGCAGAAGCAGAGTAATGCTAAGAAGCTTGAGAAGTTGATAGAAAAAAGACAAGGTAAGGTCAAAGAGATCTACCTGAAGTGCAGCAAGGCCCGAAACGAGTACCTCCTAAATTTGGCTGCAGCCAATGCCTCCATGAATAAGTACTACCTCCAAGACATCTCTACTCTCATAGATTGTGCAGATGTAGGGTATCACCTCTCTTTGGATCGGGTGCTGCAAACTTACCTGACCAGTCGGTGGCGGACCCAGCAGAATCTAAGCACGGGGCTGCAGCAGCTCCAAGGCACCGTGTCGGGACTAGACCAGAGCCAGGACAGAGACACCCTCCTGCAGGACCACTATAACACCTTCTGTATGCCCCTTCGCTTCCCTTATCAGCCCCATGATGGagaccagGTTTCCGAGGTCAGTGCAGAGGGTGAGATGAGATGCGAGCTGGAGACCAGATTCAAACAGCTACAAACCAGACTGAAAGCAGTCACCCAGGAAACAGAGGAGGCTAGAAAGAGTATGTCGGCGGCCCAGTCTTCCCTGCTGGAGAGTGTCGGTGATGATGATCTGGAGCCCAGCAGTGGTTTGTCTCAGGAGGGCAGCACTGAGAACCTGACAGTGAAGCCCAGTGTGGCCCGTCGCAGGGCCAACATGCAGGAAATAGAAAACCTCTATTTCACTAGAGTAAAAGAGCACCTTGTAGCCAGCTCCCTGGTATCTAAACTGCAAGCCAAACATGACCAGCTGAAAGTGGCTGTAGAAAAAGAAGCATCAAATGGACATCCTGGACACAATGGAAAGTCGATGCGTGTCAGGAAGAATTACTCAAGTGCCAATTTGATGCACAACCACAAACTTTTCAGTGGAGACATGCTGTCTTTCATACAGGCATCAGGACAACAGATTCCAATTGTTGTGGAAAGTTGCATTTGCTTTATCAACCTCAATGGTCTCCACCATGAAGGGATATTTAGAGTGCCGGGCTCTCAGATGGAGGTCAACAACCTGAGGGATGCATTTGAGCGAGGAGAGGACCCCTTGGCTGAGCGGAGCTATGACCTGGACTCTGTTGCTGGAGTGCTGAAGCTCTACTTCAGATGTCTGGAGAAACCTCTCTTCCCCATCGACAGCACCAGCCAACTCTTGGAGTATGCCCAAATAAAGAACGAggcagagagagcagctcagttcAAAATTGTCATATCTTCCTACCCTGAGCCCGCCATCATCGTCATGAGATACCTTTTTGCATTCCTTCACCATGTGTCTCAGTACAGTGATGAGAACATGATGCAGCCTTACAACCTGGCTGTGTGTTTTGGCCCCAGCCTGGTAAGAGGGGCTCACGATGATGATGTTGTCACCCTGCAGCCTCAGATCAACGCCCTGGTGAACAGCATCATCCTCCAGCACGAAAGCATCTTCCCCAGCCAGAGTGAAGTACAAGGGCCGGTGTATGAGAAATGCATGACACTGGAACAGGATGACAGTGAGCCTATCATTGAAGAAGGAGATGTGGAAGCAGAGTACACCCACAGCAAAGATGAGATGGAAACAGGACCCTCAGCTGACAACAGCACCCGATTGTCTGCAGCACCAACACACATAAAAGCAGAACGTCCTAGAGCCAACAGCAGCGGTTCAATTGACCAAAGTAGGTTGATGGCTGGACAAGTTGGGGGCAGCATCGCTTCAAGTGGAAAGTTAATGCTCCAGATTCCCATGGGGCCACAGTGCAAGCCACGGCGGGGCCACTCTCCTGGCTGTGTGCGCAGAGAATTGCAGGAACGCTCATCTTGTGAGGATATTGTCGTTAAAGTAGACAAGGAGGTCTGTCGCCAGATGGACTCTGTCTTCATGGAACTTCTCTCGCGGCAAGCACTGCAGGATCCCTCCTCCAccgcctcctctccctctgcccaAGCTCCCCAAAAGAAAGGGAAGCGGGATGGACGCAGGGGGAGAGGAGCAGGGCTCTTtagagcagcagctccactggactGAGAGGCATAAGTTTAGGCATCTGTAGATGACATGAAAAGAGAGGGATACATAATAAAATGGAGGTGCAGGGTAATGCCATCTGACACTAGCTTTCAACACATCCTATTTCTAGAAAACTGCGATCACTGACCCATAATCACTTCTCTGAGGTCAATGTGATTGGTTTGGGCTTCTTTCCATCGGGTGGCTCCCCACTCcttttttattcatgttttgtaCAGCAGAACCCTGCTGTGACTGCAGACCTGCAGTACAATTTGGAAACTGTGGATTACTTGAAATGCacagatgtgtttgtgtgcagctaAATGTGTTTATGCAACTTATGCCTCTATATCTACATCTGTGTAGGTGTTGATATTCAACCGTTTCCTTTTCAAGCCAAATTTGCTCAGTGGTTTTAGTCAACAAATGCACATGTATGTACGTATATAAAACTACACATATTGTTCATCAAATGTTTACCAAAATGAGGTAGTCCCATAGTTGATAAAACTGAATACTGTAGCTGTAAGGAATTTgtatacatttaattatttgtaaCTTGTTTCACACTTTATAATTTTGTCTGTATATCTGGAAAGCCGaataagtatatattttttttctattctgactgctttgtttgttttggtcgTAAATATGAGTACTGGGAAATGTGAGATGTATAACTTTAATAGGTATTGGTTATTATAAggttttaaaagttaaaatagAATAATTTACTAATAAAAATTTTTCTTGATTATGA

Function

NR:

description
PREDICTED: rho GTPase-activating protein 4-like isoform X2

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799722.1 True 3457 mRNA 0.48 22 22092506 22103785

Neighbor

gene id symbol gene type direction distance location
LOC120558639 NA coding downstream 2343 22081519 ~ 22090163 (-)
ssr4 ssr4 coding downstream 15670 22065075 ~ 22076836 (-)
fam3a fam3a,LOC102798212 coding downstream 69860 22016334 ~ 22022646 (-)
phf8 phf8,LOC102799568 coding downstream 123307 21957952 ~ 21969199 (-)
huwe1 NA coding downstream 135192 21898157 ~ 21957314 (-)
naa10 naa10,LOC106572706 coding upstream 1838 22105623 ~ 22109060 (-)
LOC120558646 LOC104967526,LOC103363731 coding upstream 16815 22120600 ~ 22124974 (-)
galnt6 LOC100705948,LOC102305018,LOC103363730 coding upstream 21628 22125413 ~ 22134643 (-)
LOC120559233 LOC104967529,LOC103363729,LOC103384589 coding upstream 31539 22135324 ~ 22173008 (-)
dtx3 LOC103368342,LOC104967533 coding upstream 127362 22231147 ~ 22237208 (-)
LOC120559667 NA non-coding downstream 12050 22079899 ~ 22080456 (-)
G52013 NA non-coding downstream 31582 22060712 ~ 22060924 (-)
G52010 avpr2,LOC107591070,LOC107673055 non-coding downstream 37407 22053714 ~ 22055099 (-)
G52009 NA non-coding downstream 44777 22046768 ~ 22047729 (-)
G51978 NA non-coding downstream 134795 21957461 ~ 21957711 (-)
G52126 NA non-coding upstream 138738 22242523 ~ 22243328 (-)
G52124 NA non-coding upstream 140026 22243811 ~ 22266053 (-)
G52127 LOC106567007,LOC105928945,LOC103368323 non-coding upstream 143325 22247110 ~ 22248083 (-)
G52128 LOC101065051,LOC100704616 non-coding upstream 144352 22248137 ~ 22248720 (-)
G52135 NA non-coding upstream 199380 22303165 ~ 22303794 (-)
si:dkey-151g10.3 wnk3 other downstream 77463 21970052 ~ 22015043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other downstream 875787 21199340 ~ 21216719 (-)
fmnl3 fmnl3 other downstream 893463 21167904 ~ 21199043 (-)
LOC120558386 hoxc10,LOC100690382 other downstream 1139988 20820171 ~ 20952518 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 2277188 19799205 ~ 19815318 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 119364 22223149 ~ 22229421 (-)
G52226 NA other upstream 425821 22529606 ~ 22530708 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other upstream 1110313 23214098 ~ 23218900 (-)
G52501 eno1,LOC104965722,LOC103151087 other upstream 1204715 23308500 ~ 23319684 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other upstream 2231364 24335149 ~ 24339456 (-)

Expression


Co-expression Network