LOC120558669 (LOC103363413,LOC108230764)


Basic Information

Item Value
gene id LOC120558669
gene name LOC103363413,LOC108230764
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7674462 ~ 7707260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799778.1
catcaccatcccAGAAGTTGCTTCAGTCTGCGGTTGGTACCCTACCCTACCCCGAGCTGCTGCTGGATCAGCGTGTAGCCATTGTCAAGCAAGGACACCACGGGAGACACTCACTCACAGCCGAACTGAGCCTCTACCGGACACAGCCGAACTACCGACTACAACCCCGGTTTGAAGTCCTGACCTCAGTGCACCTGGTACggccttttcttctcctctgggCCCAGCTGTCCTCTactcgtcttcttcttcttcttctccttgtGAGCAGACATGCCTCCAGCAGTGGGTGGGCCCGTGGGGTACACTCCTCCTGAAGGTGGCTGGGGCTGGGCGGTTGTAGTGGGGGCCTTCATCTCCATCGGCTTCTCCTACGCCTTCCCCAAATCCATCACGGTGTTCTTCAAAGAGATCGAGGTCATCTTCGATGCCACGCCCAGTCAGGTGTCCTGGATCTCCTCCATCATGCTGGCTGTCATGTATGCTGGAGGTCCAATCAGCAGCATCCTTGTGAACAAATTTGGCAGTCGGCCAATCATCTTACTCGGCGGCTGTCTGTCGGGGTCGGGACTCATCGCGGCCTCCTTCTGCAACACCGTGGAGCAGCTGTACTTCTTCATTGGTGTAGTGGGAGgtTTGGGACTGGCATTCAACTTGAATCCAGCCCTCACTATGATCGGTAAATACTTCTACAAGCGGCGGCCCATCGCCAACGGCATCGCTATGGCGGGCAGCCCCGTGTTTCTGTCCACCCTGGCCCCTCTCAACTCATGGATGTACGATCAGTTTGGCTGGCGAGGCAGCTTCCTCATCCTGGGCGGACTTCTGTTCAACTGCTGCGTGGCCGGCTCCCTCATGCGCCCCATCGGACCCAAGCCGCAGCCGGCCAAGCCCGACTCGGAGGCGGGGGAGGTCAAGGCGGTGGATCCGGTGCAGCCGCAGCCCAAGAGGACCGTCCTGCAGACCATCAACTCCTTCATCGACCTGACGCTCTTCAAACACCGCGGCTTCCTGCTCTACCTGATGGGCAACGTCGTCATGTTCTTCGGCCTCTTTGCGCCGCTCGTCTTCCTCTCCAATTATGCCAAGAGTAAGGACATCAGCAAAGAGAAGGCCGCGTTCCTGCTCTCGGTGCTGGCGTTCGTTGACATGGTTGCCCGGCCCTCCATGGGCATGCTGGCCAACACCAGATGGGTCCGGCCCAGGATTCAGTACTTCTTCGCCACTGCCGTGCTCTACAACGGACTGTGTCACGTGCTGGCGCCGATGTCCGTGGACTACACTGGATTCGTGGTGTACGCCATCTTCTTTGGTTTCGCTTTTGGCTGGCTGAGTGCGGTCTTGTTTGAGACGCTGATGGACCTGGTGGGGGCTCAGAGGTTCTCCTCGGCCGTGGGTCTGGTCACCATAGTGGAGTGTGGGCCGGTGCTGTTGGGCCCACCGCTAACAGGTAGTTTCTATAACTACTACGGCAACTATGACTACACCTACATCTCCTCTGGCATCATCCTCATGGTCGCGGGCGTGATGCTCTTCGTAGGAATGGGCATCAACTACCGCCTGCTGGCGCGAGAGAAGAAAGCCGAGGAGAAGATGGAAAAGGAGGAGGCCAAGGAAGAGCGCGCCGCCATGTTGGCGCCTCCCTCGCCGTCGAAATCCGACGCGGGGAAGGAGGAGAACGACGCGAAGGCCGCCGTCACGCTGGACGACGTCGCCAAGATGGACGAGGACACGGTGtagaaaacgtcaaaaaaaaaaaagcgtggCGCACACCCCCTTCACAGAAACC

Function

NR:

description
PREDICTED: monocarboxylate transporter 1-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG:

id description
K08179 SLC16A1; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799778.1 True 1789 mRNA 0.58 5 7674462 7707260

Neighbor

gene id symbol gene type direction distance location
fam120c fam120c coding downstream 41917 7612487 ~ 7632545 (-)
hsd17b10 hsd17b10 coding downstream 74688 7590901 ~ 7599774 (-)
LOC120558801 NA coding downstream 226613 7439183 ~ 7447849 (-)
LOC120558624 NA coding downstream 266784 7375726 ~ 7407678 (-)
LOC120558800 NA coding downstream 315054 7320025 ~ 7359408 (-)
spryd3 LOC100708393,LOC102193977,LOC103366148,LOC102305037,LOC101464627,LOC102799700 coding upstream 70527 7777787 ~ 7844399 (-)
LOC120558974 zbtb39,LOC102796472 coding upstream 182567 7889827 ~ 7898293 (-)
agap2 agap2,LOC102796960,LOC100691413,LOC102307379 coding upstream 193513 7900773 ~ 7943081 (-)
nckap5l nckap5l coding upstream 337701 8044961 ~ 8100721 (-)
kansl2 kansl2,LOC102799133 coding upstream 393679 8100939 ~ 8112235 (-)
G47837 NA non-coding downstream 50983 7607891 ~ 7623479 (-)
G47846 NA non-coding downstream 69159 7603967 ~ 7605303 (-)
LOC120558662 NA non-coding downstream 166037 7507296 ~ 7508425 (-)
G47817 NA non-coding downstream 173542 7500657 ~ 7500920 (-)
G47759 LOC104951079 non-coding downstream 232269 7441921 ~ 7442193 (-)
G47949 NA non-coding upstream 225689 7932949 ~ 7955256 (-)
G47956 NA non-coding upstream 284609 7991869 ~ 7994732 (-)
G47971 NA non-coding upstream 340039 8047299 ~ 8074235 (-)
G47972 NA non-coding upstream 340562 8047822 ~ 8050421 (-)
G47935 LOC107659949,LOC107714908,LOC106456382,LOC103385300 non-coding upstream 471395 8178655 ~ 8179100 (-)
G47814 NA other downstream 175660 7485427 ~ 7498802 (-)
LOC120558602 NA other downstream 638087 6955204 ~ 7036375 (-)
G47638 NA other downstream 868756 6804141 ~ 6805706 (-)
G47624 NA other downstream 952733 6696445 ~ 6721729 (-)
G47254 NA other downstream 2941177 4732796 ~ 4733285 (-)
G47934 LOC103363443,LOC106920718,LOC105016959,LOC102211704,LOC108251018 other upstream 64676 7771936 ~ 8187551 (-)
G47937 gpr182,LOC103467901,LOC103130457,LOC106963994 other upstream 107891 7815151 ~ 7886850 (-)
ada ada other upstream 673857 8381117 ~ 8409734 (-)
LOC120559289 LOC106911506,LOC106515592 other upstream 995705 8702965 ~ 8705483 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other upstream 1671740 9379000 ~ 9408403 (-)

Expression


Co-expression Network