LOC120558701 (LOC106516757,LOC108231961)


Basic Information

Item Value
gene id LOC120558701
gene name LOC106516757,LOC108231961
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13754929 ~ 13779091 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799855.1
CCACCCGCTTTGAGCATCCATCTGCCTAAACAGAAGAAGCCTCTCCTTGACAGTCACTGTCTAGGCACAAGCTTGCAGGCAGCAAAATCAAATGTATTTTCCCAAAGGATTTAATATCCAGTAAACCCCAGGAGGCAGCAAGTTTATACCATCTATAAACCAGTCTCAGAATCTCAGTGGGAGTGAGGACAGAGCTGTAGACAGGTCAGACGTTTGACAGTATGTGGAAAAGGACGAAGAACACAGGTCCCACTACCAACAGACGATGTTTCTCCCTCGTTCATCAATACATTCAGCGTTTTAATGAGGTGTCTGGCAACAAGTCAGCTGTGATCCGGAGAAGATCTAAGACTCCTGGAGTAATGATCACGCAGTATATAGTAGACATACCAGAGGGAAAAAGCACCCCAGATGTCCAGAGTAAACCCATCCCAGTTACTATCAAGGAAGGAAAATCAGCTGTTTTCAAGATTGTGGTGAAAGGGGATCCAAAACCAGAGGTGTCATGGAGAAGAACTAAAGGGCCTATTTCAGATAAGGACAAATTTCTGAGTAAATATGATGAATCGACTGGAGAGCACATATTAGAGatTATCAAAGTGACTGGTGCTGAAACAGATACATACAAATGCTACGCTGCCAACGAGTATGGCAAAGCTGTCTGCACAACAACATTAAATGTGATTGAGGCTTCAAAGAATCCATCAGACTTCAGAAAATTGCTGCGAAGAAGTAAAGTAGAGGAAAAAGCAGAAGGGGAAACCGATGAAAGATTCTGGGACGCGATGCTGGACGCTGACAGGAAAGACTATGAGCGCATCTGTACGGAGTTTGGTGTTGCAGACTTACATTTGATTCTCAAGAAActggaagagaagaaaaagaagagggtGCAAAACAAGTGTAAGGATGGTGCGATTCCTTATGATAAGGAGGCAACAGAGAAACCCAGCATTAAGAGCGCTGGAAGGACAAATGATTTTAATATTAAGGGCCTGATGCAAAAGGGCAACGGGCTCGAACGGGTGGATGGAAAGGTCAACCTCCTCGACACCGAGCTGAATCTGGTGGATGAAGACGTCACCCTTCTCTCTACCGAGTTTAAACTTTCCAATGTGGACTTTGTTATTAAAATTGAGGATCTTAAAGCTCCAGAAAGAGACGATGCCCTCTTTGCGTGTGTCCTGACTCACCCACTACCCAAGATCACATGGATGGGCAAGGGCAGCGCCCTGGAGGATGGAGAGAAATACAGCATAACCGTGTCAGACCACAAACTGATCCACCGGCTGCTGATCAGGGACTGCAACCAGCTGGACCAAGGCATCTATTCAGCGGTGGCTGGCATTACATCCTGCAGTGCCTGGCTGGTTGTTCAAGCTGAAAGTGAGCCTGCATCTGCTGGACAGAAGAGAGATCATAAAACTGCCTTTGCTAGTGGAGCACACATCGATCTTGAGAAGGTGGCCAGAgagcaacaaataaaaaaccGAGAGGAGATGGAGAAGATTTTTGCAGCCGTAAAAGCAAAGCACGGAGAAGGACAACTGAAGGAAGGAAAGTCATTGACCACAAGTGAAAGAGATGGTGATGGTGTAATAAGTGCAGTCACTGGACCGGGTAAATACAGCGGAGCAGTAAAGGACAAGCCTAATGCTGCGAAAACCAGTGCCCTGTCTGAGCAAACAGGAAGCAAAGGGAAAGCAAAGATCAAAAACTCAAAAGGCAACGGCCCAGAATCAAAATTAGATGCTTCAAGGTGTGTAACACAAGCAGGAGCGCAACTGATATTAGATGACCCCAAGAACAAGAAACGCACCAGATCAGGTCAAAGGGATTTTGACAAGGTAACAGATACCAATGGAGGAGGATATTCTGAAGGAGGATATTCTGAAGGAGGATATTCTGAAGGAGGATATTCTGAAGAGAATGAGGACTTCACTGGATCTACCAATAATTTAAGATACATAAAACATGGTCAAGAGACAGAACATGAACAAATTGAGTCCAGCGGCAAAAGTATTGATGTAGAGTTCAACCAGATTCAAACATTCGCCACAAGTCAAAATGAAGTGGCTGATTCTTATGGAAATAAAGACTCTACTGGGTCCATCACACATCAAAGGCGCACAATGAAGGTCCAATGGAAACAACATGCATCTGAGCAAGATCCAAATGGACGAGCAAGTGACAATGAAGGAAGTGAGGATGCAGCAAGTGACAGTGATGAGAATGAGGACTCTACCGGCCAGGTCAAGCATTCAAGTTGTTCAAAGCAAAGCCAGCAGCCACAGAAAACAGTCAACGgtgaaagTACAGGTCCTGAAAACCACAGTAAGGGTGACGAGACTGAAGACGCAACTGGCACTGCCACACATTCAAGGCGTAAAAGACAAGGCCCAATAATAGAAGATGTGGTGATTGATCCTGGGGTTCATTTCATCTGTGGTTTGTCTGATGTCAACGCTTTCATCAATGAGACTGCTGAGTTAACATGTAAGCTCAGCAGTGAAGACTGTGAGGGAGCCTGGTTCAGAGACGGCAAAAAGATATTCCCAGATGACACTTTCAGTGTCACTAAAGATGGTGCGATCCATAAATTAGTCATAACCAGGTGCGAGGAAGAGCACTCTGGGAAATACCGCTTTGAGGTAGATGGACGTAAAACAGAAGCGATGATCAACGTCCAAGATCCCCCAAGGTTTAACCCTGAAGACCTGAGTGCTTTCACTGAGCCAGTGACAGTTAAAGTGGGGCACAACGCCATCTTCAAACTCCATTTTGTAGGCCATGAACCCATAAAGATTAAGTGgtacagagagggagaagagctCCTGGAAGACAACAATACAAAGATAGAGAAATCTGCAAGTCACAGCCGCTTGCTCCTGAGCAGATGCCAGAGGAAGGACACTGGAGAGATCAAGATTAGGCTCAAGAACGAACATGGCTGCATTGAGGCAATTTCACAGCTAATTGTGCTTGacAAACCCACTTCACCCCTGGGTCCTGTAGAGCTAACTGAGAGCTCAGCTGTATGTATTGAATTTAGGTGGAGGCCTCCAAAGGATGATGGAGGCTCACCTGTGATTAACTATATTATGGAGCGACAGCAGGTGGGACGAAACACCTGGAAGAAAATAGGGGAAATCCCAGCTGTGTCCAGCTACCGCGATACAGATGTGGACCGTGGCCGGAAATATTGGTACCGTATCCGCGCAGTGACTGCCGAGGGTACGAGTGAAGTGATGGAGACTGATGATATGCAAGCCGGCACACTAGCTTTTCCTGGCCCGCCAGCACCTCCAAAGGTGGTCAGCGCCTATGACGAATGCATCAACATTTCCTGGGCTTTACCAAGTAACACAGGAGGTTCACGTATCCTGGGCTAtattttggagaaacgcaagaAGGGGAGTAATCTCTGGACCGTTGTCAATGccatggatgaaataataaaaGAGAAGAATTATGCAGTAAAAGATGTTGTGGCAGGAATGGAATATGAATTCAGAGTCACTGCCATAAACCTTTCTGGAGTTGGTGAATTCAGCAACCCCTCAGAGTTTGTATTTGCACGGGATCCAAAGAAGCCACCTGGGAAAGTTACAAGCCTAAAGGTGACAGAAACGTCTTACAGCCACTTGGTCCTGACTTGGACCAAACCTGAGGTTAAACCAGGCATACAGGATGAAGCAAAGGGATATTATGTTGACATTCGGCCTGCAGAGTGCACTGAATGGTCCCGCTGTAACAGCACTCTCATCATCACGACTTCCTTCACTGTGAAAGGCCTTAAGTCCATGGACATGTACTGGGTGAGAGTGATAGCGACTAATGATGGAGGGGAGAGTGCTCCCGAGGAGCTGGCCAACTATGTCCTCGCGATGCCCTCACCTGTGAGGCCAAAGTTTACAAACCACAAGATGAAGAGCTTCATGGTGGTGAGGGCAGGAAACTCTGTCAGGATCACAGTGAACTTTGAGgCTTCCCCACGGCCATATATTATGTGGCTAAAGGACAATGGGCCAGTGACAAAGCGAATTACCATCAGTAACTCTGATGGCTCATCCCAGCTGCTAATCCCCTCCTCTGAGCGCTCTGATACTGGCATCTACTCCATTATGGTGAAAAATCTAGCAGGGCAGGAAACATTTAGTACAGAGGTCAGGGTCACAgATGATCCAAAGCCTCCTGGACCAGTAGAACTGGAGGAAAATGTGCCAGGCACAGTTACAGTGATCTGGGAACCTTCCCCTGATGAGAAGCGCGATGACCGCCTCCACTACGCAGTGTCCAAACTGGACTCTACCAAACGCACATGGACCACAGTGGCTGACAGACTCTTTAATAACAAGATCACAGTGTGCAATATCATGCACGGGAGGGAATATCTTTTCCGGGTGTATGCCAAAAACGACATGGGCATTTCTGCACCGTCAGAGTCACCAACCTATGGGACGGAGAAGAAGaaagGAAAATTTGTGGTGAGCGTACCGACCAGAAAGGACTGTGATTTGCGATGTGCGCCAACCTTCATGGTACCTTTGAAGCTTCACACTGCACCCAAAGGCTATGAATGCTATATGAGCTGTGCAGTGAAAGGGAATCCGAAACCTCGCATCACGTGGTATCGAAATCACATCAGCCTAAACACCAATACCAACTATTACATCTCTGACACCTGTGGAGTTTGCTCCATGTTAATTCTCCGCGTAGGCCCCAAAGACATGGGGGAGTATACCATCACTGCAGAGAACGCCCTCGGACGGGCTGAGTGCTCCACCGTCCTCAGTGTCCGAgAGTGAAGACACAAGGCACCACAATATGAGCagtatttattttaagatttaGATCTAATACATACATGATGTTTGATGTTGAAGTGGTTTTGCTGCTTGGATGTAATGCACCAGTtgcaataagaaaaatatttaatattgtattaatTGGATCGCTAATACAAATAAAGTCTGTCTCAAATAAAACATTGCTTTGGGTA

Function

NR:

description
PREDICTED: immunoglobulin-like and fibronectin type III domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799855.1 True 5002 mRNA 0.46 27 13754929 13779091

Neighbor

gene id symbol gene type direction distance location
LOC120558999 NA coding downstream 8241 13743189 ~ 13746688 (-)
LOC120558698 LOC103355245,LOC104927444,LOC105928575,LOC103467653,LOC107391259,LOC106918288,LOC101471341 coding downstream 15052 13725088 ~ 13739877 (-)
LOC120559297 eif4e3,LOC101063498,LOC104943141 coding downstream 112496 13637063 ~ 13642433 (-)
LOC120559678 LOC102200381 coding downstream 121294 13616876 ~ 13633635 (-)
mdfic2 NA coding downstream 138883 13609317 ~ 13616046 (-)
LOC120558702 LOC103355290,LOC102793276,LOC102312415,LOC101471251,LOC100701884 coding upstream 71355 13850446 ~ 14082805 (-)
LOC120558709 spdef,LOC103372894 coding upstream 406218 14185309 ~ 14193336 (-)
LOC120559681 LOC104936655,LOC104942559,LOC101467974,LOC102795863 coding upstream 416391 14195482 ~ 14203960 (-)
taf11 taf11 coding upstream 449279 14228370 ~ 14230406 (-)
si:ch73-217n20.1 NA coding upstream 624927 14404018 ~ 14409405 (-)
G49624 oard1,LOC106909399 non-coding downstream 97553 13655531 ~ 13657376 (-)
G49514 NA non-coding downstream 321834 13432519 ~ 13433095 (-)
LOC120558464 NA non-coding downstream 376066 13376627 ~ 13378863 (-)
LOC120558462 NA non-coding downstream 386556 13366263 ~ 13368373 (-)
LOC120558463 NA non-coding downstream 397124 13355117 ~ 13357805 (-)
G49673 NA non-coding upstream 401249 14180340 ~ 14184391 (-)
G49675 NA non-coding upstream 426498 14205589 ~ 14205824 (-)
G49676 NA non-coding upstream 429481 14208572 ~ 14208852 (-)
G49677 NA non-coding upstream 433119 14212210 ~ 14212497 (-)
G49678 NA non-coding upstream 437929 14217020 ~ 14217510 (-)
zgc:66479 NA other downstream 1063 13747403 ~ 13753866 (-)
LOC120558461 NA other downstream 341751 13406785 ~ 13413178 (-)
LOC120558437 NA other downstream 442200 13308360 ~ 13312729 (-)
LOC120558587 NA other downstream 501321 13250986 ~ 13253608 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other downstream 533591 12924458 ~ 13221338 (-)
smim29 LOC104942556,LOC104932788,LOC105416285,LOC106572343,LOC105022745 other upstream 260644 14039735 ~ 14125823 (-)
LOC120558710 NA other upstream 361289 14140380 ~ 14145222 (-)
LOC120558545 LOC104942567,LOC103358644 other upstream 637245 14416336 ~ 14432994 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other upstream 753033 14532124 ~ 14534605 (-)
map3k12 LOC104930685,LOC103358642 other upstream 760697 14539788 ~ 14551558 (-)

Expression


Co-expression Network