LOC120558709 (spdef,LOC103372894)


Basic Information

Item Value
gene id LOC120558709
gene name spdef,LOC103372894
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14185309 ~ 14193336 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799869.1
CAAGGTGTGTCGATAGTTGGAGTGGACAGAAGTGATCCAGCTGTGAGAGACACATACAGCACATCCTCGCCTGAAGGCAAAACAGATGACTTTAGTCCACACTTAGACAGAGGAACAGTGGAAACTCTATACTGAATCCAACACTGACAAGTGTTAAACAAACATGAGCATGGGGAGTCCAGGCTGTGAACACACGGGCTGCACTGCACCTCTACACTCACCTCTCTACATCAGCCACACCCCCACTGACACGATGGCCTGGCTGGACGAGGCGGACGACATCAAACCCCCTCGCAGCTTGTTGGGGCTGCCTGAGCTCAGCTGGCCGGGGGTCTACCTCCCCTGCTACGACAGATTAGCCCTAGAGGAGAGCCCCTGGGTGCTGAGGATGACAGAGGCCCCAGCTCCAGCTGCTCCTCCCTCCAGCACTCCGGAGCCAAACCAAGCCAAGCCCAGCCAACCCCAGGACCCCCCCTCTGGGACGGAGGGTCAGGTGGAGGAGCGCTGTCTGGAGCAGGTCCAGACCATGGTGGTGGGAGAGGTGCTGAAGGATGTCGACACAGCTTGCAAACTGCTGAACATTGCACCAGACCCCTTGGACTGGAGCTGTGTGCACGTTCAGAAGTGGCTCCTCTGGACCGAGCACCTGCACAAGCTGCCGCAGGTCAGCATGATGTTTCAGGAGCTGAGCGGGAAGGATCTGTGCTCCATGACAGAAGCAGACTTCAGACAACGCTCCTCACAGTTTGGAGACATGCTGTATGCTCATCTGGACATCTGGAGATCTGCTGCAGCAATGAAGGAGCGCTGCCCACCAGAGGACAGCAAATCTGTAGCTGATGATAATTCCTGGCCAGATGTGATGCGTAACTACCCCAGCCAGCCCATCCACCTGTGGCAGTTCCTCCGAGACCTGCTCCTCAAGCCTCACAACTACAGCCGCTGCATCCGCTGGCTCAACAAAGAGAAAGGGATTTTCAAAATAGAAGACTCAGCTCTCGTGGCCAGGCTATGGGGCATGAGGAAGAACCGCCCGGCTATGAACTATGACAAACTGAGTCGCTCCATACGACAGTACTACAAGAAAGGCATCATTCGAAAGCCTGATGTATCACGCAGACTGGTCTACCAGTTCGTCAACCCCGTTTGATAAAGAGGCTCGGCTGATCCGAAAGAGAATGAGCTGAGGAGTAACCAAAGATATGCTGGACATACAGTAGGAGTAACATGAACTCTGAAGCTCGTTCATTCATTGTACTTGATGTTTCTTTTCAATTGTAAAGACTGCCTACTGAACTATGCACTCCTGCCTATCATAACATCGCTCTACTTTATTATTCTtaatagtgattttattttgtctttatcACTcgtttgaaatgtatttttttggtGTGATGTTTGGTTTCTAAAAAGGACACACATTTCTTCAAACTATGGAACATTTCAAAGAAAtaatgcttatttgctttcttgcagagttagatgaggagattgataccactctcatatccgTACAGTACATATGTAGCTGGAGCCAGCagttggttagcttagcttagcttgaagactggaaacagctgccGGTATACTGAATATTGTTTCTGTGGGGAGCTTTAGGGGTGCTGGTATGTGAGTTTTGATACCTTTGGAGTGAgcaaggctagctgtttccactctttgtgctaagctaagctaaccagcggtTGGCTCAagctacacatttaacataCAGCACATGTGAGTGGTaacaatcttctcatctaagtcTTGGCGAGAAGCAAACGCCTATTTCCCCCAAAATTTCAAACCAGtccttt

Function

symbol description
spdef Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of apoptotic process. Predicted to be part of chromatin. Predicted to be active in nucleus. Biomarker of ovarian cancer.

NR:

description
PREDICTED: SAM pointed domain-containing Ets transcription factor isoform X1

GO: NA

KEGG:

id description
K09442 SPDEF; SAM pointed domain-containing ETS transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799869.1 True 1820 mRNA 0.50 6 14185309 14193336

Neighbor

gene id symbol gene type direction distance location
LOC120558702 LOC103355290,LOC102793276,LOC102312415,LOC101471251,LOC100701884 coding downstream 102504 13850446 ~ 14082805 (-)
LOC120558701 LOC106516757,LOC108231961 coding downstream 406218 13754929 ~ 13779091 (-)
LOC120558999 NA coding downstream 438621 13743189 ~ 13746688 (-)
LOC120558698 LOC103355245,LOC104927444,LOC105928575,LOC103467653,LOC107391259,LOC106918288,LOC101471341 coding downstream 445432 13725088 ~ 13739877 (-)
LOC120559297 eif4e3,LOC101063498,LOC104943141 coding downstream 542876 13637063 ~ 13642433 (-)
LOC120559681 LOC104936655,LOC104942559,LOC101467974,LOC102795863 coding upstream 2146 14195482 ~ 14203960 (-)
taf11 taf11 coding upstream 35034 14228370 ~ 14230406 (-)
si:ch73-217n20.1 NA coding upstream 210682 14404018 ~ 14409405 (-)
dlgap4a dlgap4,LOC100704042,LOC103358645,LOC102796366 coding upstream 241909 14435245 ~ 14517114 (-)
col2a1a LOC103358639 coding upstream 372481 14565817 ~ 14590838 (-)
G49673 NA non-coding downstream 918 14180340 ~ 14184391 (-)
G49624 oard1,LOC106909399 non-coding downstream 527933 13655531 ~ 13657376 (-)
G49514 NA non-coding downstream 752214 13432519 ~ 13433095 (-)
LOC120558464 NA non-coding downstream 806446 13376627 ~ 13378863 (-)
LOC120558462 NA non-coding downstream 816936 13366263 ~ 13368373 (-)
G49675 NA non-coding upstream 12253 14205589 ~ 14205824 (-)
G49676 NA non-coding upstream 15236 14208572 ~ 14208852 (-)
G49677 NA non-coding upstream 18874 14212210 ~ 14212497 (-)
G49678 NA non-coding upstream 23684 14217020 ~ 14217510 (-)
G49679 uhrf1bp1 non-coding upstream 24311 14217647 ~ 14218807 (-)
LOC120558710 NA other downstream 40087 14140380 ~ 14145222 (-)
smim29 LOC104942556,LOC104932788,LOC105416285,LOC106572343,LOC105022745 other downstream 59486 14039735 ~ 14125823 (-)
zgc:66479 NA other downstream 431443 13747403 ~ 13753866 (-)
LOC120558461 NA other downstream 772131 13406785 ~ 13413178 (-)
LOC120558437 NA other downstream 872580 13308360 ~ 13312729 (-)
LOC120558545 LOC104942567,LOC103358644 other upstream 223000 14416336 ~ 14432994 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other upstream 338788 14532124 ~ 14534605 (-)
map3k12 LOC104930685,LOC103358642 other upstream 346452 14539788 ~ 14551558 (-)
G49845 naca,LOC107737655,LOC106571941 other upstream 652002 14845338 ~ 14853817 (-)
G50217 fgd3,LOC104966710 other upstream 2087708 16281044 ~ 16283856 (-)

Expression


Co-expression Network