mbd4 (mbd4)


Basic Information

Item Value
gene id mbd4
gene name mbd4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16426070 ~ 16429565 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799879.1
GCGCAGACTCCGATCTGCTCGCTACTTCCTGCATGCAGGAGGCGGCGAGCCTCCTATGTTGACATCAGAAAATATCCTGCAAGACAACACGAGCACCCATGAGCTCCTGTAACAAAAAGAAAGAGTTAGAGGTAAAGACGATTCAGGAATGGCTGCAGATGTTGGTTGTAAAACGTCCGCAGCTGGACATTGAGCTGAAGGCAGTGAGTGAGCTTCAACAGTGACTCCACCACGAACCTACCACTCTCTCAACCGggttcaacaacaacaacaacaacaacaacaacacacctgtCAAAATGCACACTAGCTGTGATAGCCACCAAAGTTACAAGGACATGGGTGACTCATGCCACACCTCCACATTGCCCCTTGGCTGGATCAGAGAGGTTAGGCAGCGGAAAGAAGGGAAGACAGCAGGCAAAATGGACATCTACATTACAAGTCCCCAAGGGCAGAAGTTCCGCTCAAGAGCATCCCTGCATGCTTTCCTCCTAAAAGATGGAGAAGGGAACTTAGACATAAACCTCTTTGATTTCACCACATCCAAGGACAATGTTGTCACCACTTCACAATTACTCCCCTCCCAAGTAAaacagaggagaagaaagaaaagacatgCAGATGGACAGCAGATGACAACAGAAGATGCAACACCTCCAAATAAATCTAAAAGAGCCCCTTCCTCCCTCAGAAGTGAAACTAAAGACAGAAAAGTAAAGAGTGCAACTGTGAAGTGTTGCATACAAGCTGCACCTACATCCACAGAGGATGATGTCAAACTGCAGAAGAGCCCTCAGAGTCTGAGAGAGAAGCTACTCCGACTGGCTCCTTCCAGTAACCAACAAAACACTCTCATTGTTCACAAGGACGAAGAGGCAGACTCGCAGCCTTCTGTCCCGACTCTGAATGTTGAGCCTGCCACTGAGAGTGAGAGCGAGAACGAGGGTGAGGATGAACGAGGCGGAGATGAGATACAGATTCACAGCAAAGGTGACAACAAGTCTAATTCTGAACTGGAGGCCGTCGCTGAAAGTCACCGGGATGAGGAAGGCGAGGTGTTGTTACCTGACATCACTGGTGGGGGCTGCACACCAGTGAGAGATTCCCAGAATGATGATCTACGCTGTCTGACAGCTTATAAAAGTAGCAGTTCAAAGTCCAAGAGTGTGGAAGACAAGCGAAAAACAAGCCCTTATTTCAGCAGGAAACCAAACAGAGATGGCCTTAGCCCACCCAGAAGGAAGGCCTTCAAGAAGTGGACACCCCCTCGCTCACCCTACAACCTCGTACAGGAAACCCTTTTCCACGACCCTTGGAAGCTCCTGGTGGCCACCATTTTTCTGAATAAGACCAGTGGCAAGATGGCCATACCAGTACTGTGGCAGTTCTTTGAACGTTACCCGTCTGCAGAGGTGACCCGCGAGGCCGACTGGAAGCCCCTATCTGAACTTATGAAGCCACTAGGCCTGTATGAGCTTAGAGCCAAAACACTCACTCGATTCTCAGATGAATATCTAACTAAACAGTGGCGTTACCCCATCGAGTTGCATGGTATTGGGAAGTACGGCAACGACTCCTATAGGATCTTCTGTGTGGGCGAGTGGAGAGATGTGAAACCTGAAgatcacatgttaaacaaataccACGCCTGGCTGTGGGAGAACCATGAAACATTTGGAATCTGAAACACGTAATATGAGGAACTGCAAGGAAGATTTGATGTGGTGCAGACAAGAAAATGATCACATAAACAATACACATAACAATATCAGTATTATGATGTACACGCAATGTTAAACCTGGATACCTTTCAAATTATGCAGTTATATTACTTCttcctttttaaattttttttacttaatgtGTAATAAAATGTTTGGTTTAAAAGTT
>XM_039799880.1
GCGCAGACTCCGATCTGCTCGCTACTTCCTGCATGCAGGAGGCGGCGAGCCTCCTATGTTGACATCAGAAAATATCCTGCAAGACAACACGAGCACCCATGAGCTCCTGTAACAAAAAGAAAGAGTTAGAGGTAAAGACGATTCAGGAATGGCTGCAGATGTTGGTTGTAAAACGTCCGCAGCTGGACATTGAGCTGAAGGCAGTGAGTGAGCTTCAACAGTGACTCCACCACGAACCTACCACTCTCTCAACCGggttcaacaacaacaacaacaacaacaacaacacacctgtCAAAATGCACACTAGCTGTGATAGCCACCAAAGTTACAAGGACATGGGTGACTCATGCCACACCTCCACATTGCCCCTTGGCTGGATCAGAGAGGTTAGGCAGCGGAAAGAAGGGAAGACAGCAGGCAAAATGGACATCTACATTACAAGTCCCCAAGGGCAGAAGTTCCGCTCAAGAGCATCCCTGCATGCTTTCCTCCTAAAAGATGGAGAAGGGAACTTAGACATAAACCTCTTTGATTTCACCACATCCAAGGACAATGTTGTCACCACTTCACAATTACTCCCCTCCCAAGTAAaacagaggagaagaaagaaaagacatgCAGATGGACAGCAGATGACAACAGAAGATGCAACACCTCCAAATAAATCTAAAAGAGCCCCTTCCTCCCTCAGAAGTGAAACTAAAGACAGAAAAGTAAAGAGTGCAACTGTGAAGTGTTGCATACAAGCTGCACCTACATCCACAGAGGATGATGTCAAACTGCAGAAGAGCCCTCAGAGTCTGAGAGAGAAGCTACTCCGACTGGCTCCTTCCAGTAACCAACAAAACACTCTCATTGTTCACAAGGACGAAGAGGCAGACTCGCAGCCTTCTGTCCCGACTCTGAATGTTGAGCCTGCCACTGAGAGTGAGAGCGAGAACGAGGGTGAGGATGAACGAGGCGGAGATGAGATACAGATTCACAGCAAAGGTGACAACAAGTCTAATTCTGAACTGGAGGCCGTCGCTGAAAGTCACCGGGATGAGGAAGGCGAGGTGTTGTTACCTGACATCACTGGTGGGGGCTGCACACCAGTGAGAGATTCCCAGAATGATGATCTACGCTGTCTGACAGCTTATAAAAAGTCCAAGAGTGTGGAAGACAAGCGAAAAACAAGCCCTTATTTCAGCAGGAAACCAAACAGAGATGGCCTTAGCCCACCCAGAAGGAAGGCCTTCAAGAAGTGGACACCCCCTCGCTCACCCTACAACCTCGTACAGGAAACCCTTTTCCACGACCCTTGGAAGCTCCTGGTGGCCACCATTTTTCTGAATAAGACCAGTGGCAAGATGGCCATACCAGTACTGTGGCAGTTCTTTGAACGTTACCCGTCTGCAGAGGTGACCCGCGAGGCCGACTGGAAGCCCCTATCTGAACTTATGAAGCCACTAGGCCTGTATGAGCTTAGAGCCAAAACACTCACTCGATTCTCAGATGAATATCTAACTAAACAGTGGCGTTACCCCATCGAGTTGCATGGTATTGGGAAGTACGGCAACGACTCCTATAGGATCTTCTGTGTGGGCGAGTGGAGAGATGTGAAACCTGAAgatcacatgttaaacaaataccACGCCTGGCTGTGGGAGAACCATGAAACATTTGGAATCTGAAACACGTAATATGAGGAACTGCAAGGAAGATTTGATGTGGTGCAGACAAGAAAATGATCACATAAACAATACACATAACAATATCAGTATTATGATGTACACGCAATGTTAAACCTGGATACCTTTCAAATTATGCAGTTATATTACTTCttcctttttaaattttttttacttaatgtGTAATAAAATGTTTGGTTTAAAAGTT
>XM_039799881.1
TGCGCAGACTCCGATCTGCTCGCTACTTCCTGCATGCAGGAGGCGGCGAGCCTCCTATGTTGACATCAGAAAATATCCTGCAAGACAACACGAGCACCCATGAGCTCCTGTAACAAAAAGAAAGAGTTAGAGGTAAAGACGATTCAGGAATGGCTGCAGATGTTGGTTGTAAAACGTCCGCAGCTGGACATTGAGCTGAAGGCAGTGAGTGAGCTTCAACAGTGACTCCACCACGAACCTACCACTCTCTCAACCGggttcaacaacaacaacaacaacaacaacaacacacctgtCAAAATGCACACTAGCTGTGATAGCCACCAAAGTTACAAGGACATGGGTGACTCATGCCACACCTCCACATTGCCCCTTGGCTGGATCAGAGAGGTTAGGCAGCGGAAAGAAGGGAAGACAGCAGGCAAAATGGACATCTACATTACAAGTCCCCAAGGGCAGAAGTTCCGCTCAAGAGCATCCCTGCATGCTTTCCTCCTAAAAGATGGAGAAGGGAACTTAGACATAAACCTCTTTGATTTCACCACATCCAAGGACAATGTTGTCACCACTTCACAATTACTCCCCTCCCAAGTAAaacagaggagaagaaagaaaagacatgCAGATGGACAGCAGATGACAACAGAAGATGCAACACCTCCAAATAAATCTAAAAGAGCCCCTTCCTCCCTCAGAAGTGAAACTAAAGACAGAAAAGTAAAGAGTGCAACTGTGAAGTGTTGCATACAAGCTGCACCTACATCCACAGAGGATGATGTCAAACTGCAGAAGAGCCCTCAGAGTCTGAGAGAGAAGCTACTCCGACTGGCTCCTTCCAGTAACCAACAAAACACTCTCATTGTTCACAAGGACGAAGAGGCAGACTCGCAGCCTTCTGTCCCGACTCTGAATGTTGAGCCTGCCACTGAGAGTGAGAGCGAGAACGAGGGTGAGGATGAACGAGGCGGAGATGAGATACAGATTCACAGCAAAGGTGACAACAAGTCTAATTCTGAACTGGAGGCCGTCGCTGAAAGTCACCGGGATGAGGAAGGCGAGGTGTTGTTACCTGACATCACTGGTGGGGGCTGCACACCAGTGAGAGATTCCCAGAATGATGATCTACGCTGTCTGACAGCTTATAAAAGTAGCAGTTCAAGCCTTAGCCCACCCAGAAGGAAGGCCTTCAAGAAGTGGACACCCCCTCGCTCACCCTACAACCTCGTACAGGAAACCCTTTTCCACGACCCTTGGAAGCTCCTGGTGGCCACCATTTTTCTGAATAAGACCAGTGGCAAGATGGCCATACCAGTACTGTGGCAGTTCTTTGAACGTTACCCGTCTGCAGAGGTGACCCGCGAGGCCGACTGGAAGCCCCTATCTGAACTTATGAAGCCACTAGGCCTGTATGAGCTTAGAGCCAAAACACTCACTCGATTCTCAGATGAATATCTAACTAAACAGTGGCGTTACCCCATCGAGTTGCATGGTATTGGGAAGTACGGCAACGACTCCTATAGGATCTTCTGTGTGGGCGAGTGGAGAGATGTGAAACCTGAAgatcacatgttaaacaaataccACGCCTGGCTGTGGGAGAACCATGAAACATTTGGAATCTGAAACACGTAATATGAGGAACTGCAAGGAAGATTTGATGTGGTGCAGACAAGAAAATGATCACATAAACAATACACATAACAATATCAGTATTATGATGTACACGCAATGTTAAACCTGGATACCTTTCAAATTATGCAGTTATATTACTTCttcctttttaaattttttttacttaatgtGTAATAAAATGTTTGGTTTAAAAGTT
>XM_039799882.1
GCGCAGACTCCGATCTGCTCGCTACTTCCTGCATGCAGGAGGCGGCGAGCCTCCTATGTTGACATCAGAAAATATCCTGCAAGACAACACGAGCACCCATGAGCTCCTGTAACAAAAAGAAAGAGTTAGAGGTAAAGACGATTCAGGAATGGCTGCAGATGTTGGTTGTAAAACGTCCGCAGCTGGACATTGAGCTGAAGGCAGTGAGTGAGCTTCAACAGTGACTCCACCACGAACCTACCACTCTCTCAACCGggttcaacaacaacaacaacaacaacaacaacacacctgtCAAAATGCACACTAGCTGTGATAGCCACCAAAGTTACAAGGACATGGGTGACTCATGCCACACCTCCACATTGCCCCTTGGCTGGATCAGAGAGGTTAGGCAGCGGAAAGAAGGGAAGACAGCAGGCAAAATGGACATCTACATTACAAGTCCCCAAGGGCAGAAGTTCCGCTCAAGAGCATCCCTGCATGCTTTCCTCCTAAAAGATGGAGAAGGGAACTTAGACATAAACCTCTTTGATTTCACCACATCCAAGGACAATGTTGTCACCACTTCACAATTACTCCCCTCCCAAGTAAaacagaggagaagaaagaaaagacatgCAGATGGACAGCAGATGACAACAGAAGATGCAACACCTCCAAATAAATCTAAAAGAGCCCCTTCCTCCCTCAGAAGTGAAACTAAAGACAGAAAAGTAAAGAGTGCAACTGTGAAGTGTTGCATACAAGCTGCACCTACATCCACAGAGGATGATGTCAAACTGCAGAAGAGCCCTCAGAGTCTGAGAGAGAAGCTACTCCGACTGGCTCCTTCCAGTAACCAACAAAACACTCTCATTGTTCACAAGGACGAAGAGGCAGACTCGCAGCCTTCTGTCCCGACTCTGAATGTTGAGCCTGCCACTGAGAGTGAGAGCGAGAACGAGGGTGAGGATGAACGAGGCGGAGATGAGATACAGATTCACAGCAAAGGTGACAACAAGTCTAATTCTGAACTGGAGGCCGTCGCTGAAAGTCACCGGGATGAGGAAGGCGAGGTGTTGTTACCTGACATCACTGAGTCCAAGAGTGTGGAAGACAAGCGAAAAACAAGCCCTTATTTCAGCAGGAAACCAAACAGAGATGGCCTTAGCCCACCCAGAAGGAAGGCCTTCAAGAAGTGGACACCCCCTCGCTCACCCTACAACCTCGTACAGGAAACCCTTTTCCACGACCCTTGGAAGCTCCTGGTGGCCACCATTTTTCTGAATAAGACCAGTGGCAAGATGGCCATACCAGTACTGTGGCAGTTCTTTGAACGTTACCCGTCTGCAGAGGTGACCCGCGAGGCCGACTGGAAGCCCCTATCTGAACTTATGAAGCCACTAGGCCTGTATGAGCTTAGAGCCAAAACACTCACTCGATTCTCAGATGAATATCTAACTAAACAGTGGCGTTACCCCATCGAGTTGCATGGTATTGGGAAGTACGGCAACGACTCCTATAGGATCTTCTGTGTGGGCGAGTGGAGAGATGTGAAACCTGAAgatcacatgttaaacaaataccACGCCTGGCTGTGGGAGAACCATGAAACATTTGGAATCTGAAACACGTAATATGAGGAACTGCAAGGAAGATTTGATGTGGTGCAGACAAGAAAATGATCACATAAACAATACACATAACAATATCAGTATTATGATGTACACGCAATGTTAAACCTGGATACCTTTCAAATTATGCAGTTATATTACTTCttcctttttaaattttttttacttaatgtGTAATAAAATGTTTGGTTTAAAAGTT

Function

symbol description
mbd4 Predicted to enable DNA binding activity. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in retina and trunk.

NR:

description
PREDICTED: methyl-CpG-binding domain protein 4 isoform X2

GO: NA

KEGG:

id description
K10801 MBD4; methyl-CpG-binding domain protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799879.1 True 1893 mRNA 0.47 8 16426070 16429564
XM_039799880.1 False 1881 mRNA 0.47 8 16426070 16429564
XM_039799881.1 False 1828 mRNA 0.47 7 16426070 16429565
XM_039799882.1 False 1815 mRNA 0.47 8 16426070 16429564

Neighbor

gene id symbol gene type direction distance location
LOC120558718 LOC104966685,LOC103361981,LOC102294611,LOC102076950,LOC102210297 coding downstream 123 16424220 ~ 16425947 (-)
ptpdc1b LOC103361997,LOC104940250,LOC102303597,LOC101466018,LOC102203312 coding downstream 253038 16166305 ~ 16173032 (-)
LOC120558319 wnt7a,LOC103361999,LOC103145089,LOC103385523 coding downstream 264057 16154061 ~ 16162013 (-)
nup210 NA coding downstream 330267 16066540 ~ 16095803 (-)
LOC120558787 iqsec1,LOC101467973,LOC100710993,LOC102777856,LOC106948087,LOC103145094,LOC102305730 coding downstream 364174 15968560 ~ 16061896 (-)
plxnd1 plxnd1 coding upstream 30685 16460250 ~ 16526652 (-)
tmcc1a tmcc1,LOC102793771 coding upstream 98953 16528518 ~ 16577086 (-)
mrps25 mrps25 coding upstream 196562 16626127 ~ 16628418 (-)
nr2c2 nr2c2 coding upstream 201007 16630572 ~ 16643870 (-)
wdr46 wdr46 coding upstream 220332 16649897 ~ 16658802 (-)
G50278 NA non-coding downstream 7457 16416921 ~ 16418613 (-)
G50230 NA non-coding downstream 46447 16286321 ~ 16379623 (-)
G50143 NA non-coding downstream 469398 15952530 ~ 15956672 (-)
G50153 LOC101174347 non-coding downstream 492772 15930121 ~ 15933298 (-)
G50138 LOC104940213,LOC103368778,LOC102235665 non-coding downstream 535953 15886890 ~ 15890117 (-)
G50371 NA non-coding upstream 150511 16580076 ~ 16580982 (-)
G50378 NA non-coding upstream 231433 16660998 ~ 16663045 (-)
G50382 NA non-coding upstream 236485 16666050 ~ 16679676 (-)
G50389 qars non-coding upstream 284496 16714061 ~ 16714748 (-)
G50443 NA non-coding upstream 515206 16944771 ~ 16944972 (-)
G50217 fgd3,LOC104966710 other downstream 142214 16281044 ~ 16283856 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 1572253 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 1874512 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 1891465 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 1993076 14416336 ~ 14432994 (-)
LOC120559328 smim4 other upstream 677269 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 1258550 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 1405515 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 1544728 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 2445190 18874755 ~ 18886895 (-)

Expression


Co-expression Network