LOC120558718 (LOC104966685,LOC103361981,LOC102294611,LOC102076950,LOC102210297)


Basic Information

Item Value
gene id LOC120558718
gene name LOC104966685,LOC103361981,LOC102294611,LOC102076950,LOC102210297
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16424220 ~ 16425947 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799886.1
CTTTTTGAGCACACTGATGCATGACCTCTCACTCCACGTAGCAGCTTTCTTTTTGGTGCATGGGGGGGTAACCTGATTCCCAAGGCAACTGTTGCCAACGCAAAACTCTCAGTGAACGCACAGGCATGTCACAGTTTAATCTCTAACTAGTGCCAGTACAGTAATTTgctatatttactgtacatttggagttgtgttatTATTTACTAGAAATCAGAAATGCTACTTTAAAGAGATAATTCATTTGTGCAGGCATTGACACTTAAGCTTGATTCCAAAAAGACTACTCTGGTGGGCGAACAGAAGAAACAACCTGAACTACAAAATGAGACTACCAGCCATCTCTATAGCTTCCACACCAGTGTGTATTCCTCACGATACACTTCCTGTCCGACAGAGTCGCAGCCTGGTGGTCACTCCGATGATGTTTCCCAGCATCTCAGACTCTGCCCGGCTGTGGACAAGCAGTCAGAGTATTCCAAGACTGAACCCTTTACATCCACCTTTGGTCTATAAACGCACTGTCAGTCTGGAGACGCCAGCTGTTCACCACCACAACCACCAGAGGACACTGATTATGCAGAGGAGAGAGCACCACAGGTATCATCAAGTGTGGCGAAAACCTTTTTATGGAAccagcagtgagagagaagagtacagGAAGGAGTTGCGAGAGCAGTTAAAGAAGCAGATGGAGGAGAAATGTGCAGCTCTGAAACTGCAGCTGGCCAGTAAAGTGAAGGAAGCAGAGTATCTAAGAGAAGTGGACCGCCTCGCCCTGTCCAGTGAAAGAGACCTAAGGATCCAGCACAGCAAAGCAATGACAGCTTACAGAGATGAGAACAAGAGGctaATGGAGCAGAGCTGGAGGGACAGAGCACTAACACGTTCCCAGGAGACCCTAAAGGAGAGAAAGCTGCTGTGTCTCAACCCCATTAACTGGAGTGGAACACTGAAATAGATGGAACCTCAAGAATCTAAACTTCAAACTCAGGCCTCACTGTAGCACTTGGGCATGCCTAAATGTCAGATGAAAATGGGATGCAacatatataatgtaatgtaaagagCAGa
>XM_039799887.1
CTTTTTGAGCACACTGATGCATGACCTCTCACTCCACGTAGCAGCTTTCTTTTTGGTGCATGGGGGGGTAACCTGATTCCCAAGGCAACTGTTGCCAACGCAAAACTCTCAGTGAACGCACAGGCATTGACACTTAAGCTTGATTCCAAAAAGACTACTCTGGTGGGCGAACAGAAGAAACAACCTGAACTACAAAATGAGACTACCAGCCATCTCTATAGCTTCCACACCAGTGTGTATTCCTCACGATACACTTCCTGTCCGACAGAGTCGCAGCCTGGTGGTCACTCCGATGATGTTTCCCAGCATCTCAGACTCTGCCCGGCTGTGGACAAGCAGTCAGAGTATTCCAAGACTGAACCCTTTACATCCACCTTTGGTCTATAAACGCACTGTCAGTCTGGAGACGCCAGCTGTTCACCACCACAACCACCAGAGGACACTGATTATGCAGAGGAGAGAGCACCACAGGTATCATCAAGTGTGGCGAAAACCTTTTTATGGAAccagcagtgagagagaagagtacagGAAGGAGTTGCGAGAGCAGTTAAAGAAGCAGATGGAGGAGAAATGTGCAGCTCTGAAACTGCAGCTGGCCAGTAAAGTGAAGGAAGCAGAGTATCTAAGAGAAGTGGACCGCCTCGCCCTGTCCAGTGAAAGAGACCTAAGGATCCAGCACAGCAAAGCAATGACAGCTTACAGAGATGAGAACAAGAGGctaATGGAGCAGAGCTGGAGGGACAGAGCACTAACACGTTCCCAGGAGACCCTAAAGGAGAGAAAGCTGCTGTGTCTCAACCCCATTAACTGGAGTGGAACACTGAAATAGATGGAACCTCAAGAATCTAAACTTCAAACTCAGGCCTCACTGTAGCACTTGGGCATGCCTAAATGTCAGATGAAAATGGGATGCAacatatataatgtaatgtaaagagCAGa
>XM_039799888.1
CTTTTTGAGCACACTGATGCATGACCTCTCACTCCACGTAGCAGCTTTCTTTTTGGTGCATGGGGGGGTAACCTGATTCCCAAGGCAACTGTTGCCAACGCAAAACTCTCAGTGAACGCACAGGCATGTCACAGTTTAATCTCTAACTAGTGCCAGTACAGTAATTTgctatatttactgtacatttggagttgtgttatTATTTACTAGAAATCAGAAATGCTACTTTAAAGAGATAATTCATTTGTGCAGGCATTGACACTTAAGCTTGATTCCAAAAAGACTACTCTGGTGGGCGAACAGAAGAAACAACCTGAACTACAAAATGAGACTACAGTCGCAGCCTGGTGGTCACTCCGATGATGTTTCCCAGCATCTCAGACTCTGCCCGGCTGTGGACAAGCAGTCAGAGTATTCCAAGACTGAACCCTTTACATCCACCTTTGGTCTATAAACGCACTGTCAGTCTGGAGACGCCAGCTGTTCACCACCACAACCACCAGAGGACACTGATTATGCAGAGGAGAGAGCACCACAGGTATCATCAAGTGTGGCGAAAACCTTTTTATGGAAccagcagtgagagagaagagtacagGAAGGAGTTGCGAGAGCAGTTAAAGAAGCAGATGGAGGAGAAATGTGCAGCTCTGAAACTGCAGCTGGCCAGTAAAGTGAAGGAAGCAGAGTATCTAAGAGAAGTGGACCGCCTCGCCCTGTCCAGTGAAAGAGACCTAAGGATCCAGCACAGCAAAGCAATGACAGCTTACAGAGATGAGAACAAGAGGctaATGGAGCAGAGCTGGAGGGACAGAGCACTAACACGTTCCCAGGAGACCCTAAAGGAGAGAAAGCTGCTGTGTCTCAACCCCATTAACTGGAGTGGAACACTGAAATAGATGGAACCTCAAGAATCTAAACTTCAAACTCAGGCCTCACTGTAGCACTTGGGCATGCCTAAATGTCAGATGAAAATGGGATGCAacatatataatgtaatgtaaagagCAGa

Function

NR:

description
PREDICTED: uncharacterized protein LOC104966685

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799886.1 True 1074 mRNA 0.46 6 16424220 16425947
XM_039799887.1 False 945 mRNA 0.48 7 16424220 16425947
XM_039799888.1 False 1012 mRNA 0.46 6 16424220 16425947

Neighbor

gene id symbol gene type direction distance location
ptpdc1b LOC103361997,LOC104940250,LOC102303597,LOC101466018,LOC102203312 coding downstream 251188 16166305 ~ 16173032 (-)
LOC120558319 wnt7a,LOC103361999,LOC103145089,LOC103385523 coding downstream 262207 16154061 ~ 16162013 (-)
nup210 NA coding downstream 328417 16066540 ~ 16095803 (-)
LOC120558787 iqsec1,LOC101467973,LOC100710993,LOC102777856,LOC106948087,LOC103145094,LOC102305730 coding downstream 362324 15968560 ~ 16061896 (-)
gp9 NA coding downstream 459315 15963557 ~ 15964905 (-)
mbd4 mbd4 coding upstream 123 16426070 ~ 16429565 (-)
plxnd1 plxnd1 coding upstream 34303 16460250 ~ 16526652 (-)
tmcc1a tmcc1,LOC102793771 coding upstream 102571 16528518 ~ 16577086 (-)
mrps25 mrps25 coding upstream 200180 16626127 ~ 16628418 (-)
nr2c2 nr2c2 coding upstream 204625 16630572 ~ 16643870 (-)
G50278 NA non-coding downstream 5607 16416921 ~ 16418613 (-)
G50230 NA non-coding downstream 44597 16286321 ~ 16379623 (-)
G50143 NA non-coding downstream 467548 15952530 ~ 15956672 (-)
G50153 LOC101174347 non-coding downstream 490922 15930121 ~ 15933298 (-)
G50136 NA non-coding downstream 528220 15879334 ~ 15896000 (-)
G50371 NA non-coding upstream 154129 16580076 ~ 16580982 (-)
G50378 NA non-coding upstream 235051 16660998 ~ 16663045 (-)
G50382 NA non-coding upstream 240103 16666050 ~ 16679676 (-)
G50389 qars non-coding upstream 288114 16714061 ~ 16714748 (-)
G50443 NA non-coding upstream 518824 16944771 ~ 16944972 (-)
G50217 fgd3,LOC104966710 other downstream 140364 16281044 ~ 16283856 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 1570403 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 1872662 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 1889615 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 1991226 14416336 ~ 14432994 (-)
LOC120559328 smim4 other upstream 680887 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 1262168 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 1409133 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 1548346 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 2448808 18874755 ~ 18886895 (-)

Expression


Co-expression Network