kcnd1 (kcnd1)


Basic Information

Item Value
gene id kcnd1
gene name kcnd1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39417332 ~ 40418704 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799938.1
gagagagagagagagagagagagagagagagagaggatgcagCCAGGTGGAGGCCAGACACATATTTGTTAATGCTCTTTCCTTCCCGGATTTCTatctttttgcctttttgtctCGAGTCCCAGCAGCGATGAACCTGTGACGGCCCTATCTCAgagaataactttttttttacacatcatgAAAAGGACTGCTGAGACCTTTTGAggcatttttcttttcctgccACGAGAGTCTGTGTCATGCTGTGAAGTGGAACATCTTTAGTTATTTCAGGCTGAAAGTCTCTCGTCTGCAATCGGAAGAACATCCACCAGAAACAGGGAACTATCCTATATCCAGATGATTCTctgagagtttctgtttttttttttttttttttttctcaacggAGCATCTCGCACGCCACGAGGAgctgtttacatttttgtattttattccaAAGAGCAATAggaggtctctctctctttctctctctctctctctctctctctctctctctctctctctctctcttctctctctctcggcccAACTGGCAGGACGCCAACTCGTCAGAATCGGAGACTGGCCACGTAGCTGTCAGATGCGCCGGCTTTCTCGCTCCTTCACAGCGGTTCTTTCATGGCTTGACACCCTAACTGTCGGCTAACCCCTTCCCTCcgctcccttcctcccttccaaCATGTCCACCCACCTAAAGAAGTGAGATTTCAGCTTCCTAACTtcctctcccccccctccccgctCCTCCTCCGAAGCACCGATCTCGTCTCCACAGGTGGGACTGTGCTGATGCGAGATGGCGGCCGGCGTGGCCACGTGGCTGCCGTTTGCGCGGGCCGCGGCGGTGGGATGGCTCCCGTTGGCCAAGAAGACGATGCCCAAACCTCCCGTGGACAAGACGTCCAAGTCAGACGAGATCCTGTACGTCAACGTCAGCGGCGTCCGCTTTCAGACATGGAAGAACACTCTGGATCGCTATCCGGAGACGCTGCTGGGTTCTTCGGAGAAAGAGTTTTTCTACAACGAGGAAACTCAGGAATTCTTCTTCGACCGAGACCCCGAAATGTTCCGCCACATTCTGAACTTTTACCGCACGGGGAAGCTCCACTACCCCCGAAACGAGTGCATCCAGGCCTTCGACGAAGAGCTGGCCTTCTACGGCATCGTGCCGGAGATCATCGGAGACTGCTGCATGGAGGAATACCGCGACCGgaagaaggagaaccaggagcgTCTGGCGGAGGACACCGAGGCCAACGAGGCGATGGACGCCCCCCTGCCCCCCCACAGCACGTCTCGGGAGCGCCTGTGGCGAGCCTTCGAGAACCCCCACACCTCCACCATGGCGCTGGTCTTCTACTACGTCACGGGCTTCTTCATCGCGGTCTCCGTCATCGCCAACGTGGTGGAGACGGTGCCCTGCCGGCCGCCCAAAGGCAGCGTCAAAGACCTTCCCTGCGGCGAGAAGTACCAGCTGGCGTTCTTCTGCATGGACACTGCCTGCGTGCTCATCTTCACCTTTGAGTACCTGATGCGTCTGTTCGCGGCGCCGAGCCGCTGCAAGTTCATGCGCTCGGTGATGTCTGTGATCGACGTGGTGGCCATCATGCCGTACTACATCGGCCTGGTGATGCCCGAGAACGAGGACGTGAGCGGCGCGTTCGTCACGCTGCGCGTCTTCCGCGTTTTCCGGATCTTCAAGTTCTCGCGGCACTCGCAGGGTTTGAGGATTTTGGGCTACACGCTGAAGAGCTGCGCCTCCGAGCTGGGctttctgctcttctccctcaCCATGGCCATCATCATCTTCGCCACCGTCATGTTCTACGCCGAGAAGGGCACCAAGGGCTCCACCTTCACCTCCATCCCGGCCTCCTTCTGGTACACCATCGTCACCATGACTACGCTCGGGTACGGCGACATGGTTCCCAACACCATCGCGGGGAAGATCTTCGGCTCCATCTGCTCTCTGAGCGGCGTGCTGGTGATCGCCCTGCCCGTGCCCGTCATCGTGTCCAACTTCAGCCGCATCTACCACCAGAACCAGAGGGCGGACAAGATGAGAGCGCAGCAGAAAGTGCGTATGGCTCGGATCCGCATGGCGAAGAAAGGAACCGTCAACGCCTTCCTCCAGTACAAAGAAGACCGAGCCATGggggaCCGGCACAGTGACAACacgactgtgtgtgtgaagaacAGATCAGCGTTCGAGCATCAACACAACCACCTGCTGCACTGTCTGGAGAAGACCACGAACCACGAGTTCACAAACGAGATCAACTACAGCGAGCTCTGCATAACGGAGTCCGTGGGCTACAGGACCAGTCGCAGCACCTCCCTGTCcagccagcagggggcgcaGAACAACTCCACCGGCTGCTGCCCGCGCCGCGCCAGGAGGAGAGCCGCGATGCGATTGGCTAACTCCACGGTGTCCGTCAGCCGCGGGAGCATCCAGGAGCTGGACACGCTGCACATCAAAAACACCTCCATACCACCACAAACTCGTTCCAGTCTGAACGCCCAGATGTGTGACCTGAAGCTGAACTGCGGGGAACCAGATTTCAGCGCTGCCATCATCAGCATCCCCACGCCACCCGCCAACTCGCCTGATGAGAGCCTCCCCTCGTCGCCCGCGCCCGTCCCTGGCATCCTGCGCAACACCCGGGCCACCGCATACACCCACGACAACGTCAAAATCTCCTCCTTATAACCTCCGACCACGCCCTAGACTTCCCCCTCCAAACCCTGCCGCCCCACCAGCCAACCTCTCCGTGAACTCTGAACTTCCTTTGAACCTCTAATCTTGAACCCAGGGAACTGCAAGCTGAGATTTCGGGGACTACTCAGATGGATATTTTGAGTACTGCTGGTTTGCTTTCACTTCCTCTCACCATTTTGTGGATtaaaggagataacatggaGACAGAATGGCTTTCCATAAAGGAGACAACCAGGCAACGGCAGCCAACTGGAGCAAAAATCAAAGGCAAGGAATTTGAATAGGAACCGTAATTGTTCTCCCAAAGACTTTCCCAAGTCTTAAGGATCTCCTCCTCATGCATTTTACCTCAACGTGTGTTGGTGTACAATGCATAAGGAGGGGATTTGCCTCCCTTTCACAGTTCTGACCTTTTGAATCTCATTGCACAAACCCCAGAGAGAGTTCATCCAATGGAAAAGATGCCAAGACTCCCAAAGAATGACCCCGAAGCCAACTGACAGGTTGAATCATTGGGTAAATGTTGCATCCTCCTCACCTTAATCCTTAAGAGGAGGGCTACAAAATGATTGCTGCCGAGGACAACGGTCTTATTTTTAAGTCTTAACCTGGCGTCAACGGActgttttatttctcaaaagAGAAATTTGCCTGTTGGTTTTTGATGAATCTGAAGGACTGCCGACCGCTGGTCTAACTCATCTGTGATTGGACAAAGAAGTGACGGAGATGATCTGTATACAACCAAACAATCCTCAGCGGCTTCAGAGGCCATGGCTACAACTTTTTGATTACTTTGgatgtttgttgttgtggttaaAACAGCAGGTGACGGCTAGCAGGCGTATAGTGTTTGGCTTTACCAAACCAGGatggtttcttttcttttactgcgACAGACGGGATCAACGCTGCTCAGTTGAGTGAAGTGTTGGAGCTCTTTTCCTTGAAATGTAAAGGTTTTGTAGGTTAAAAGCCCAACAATGGGTCAAGATGTCTTAGAGGAGGATGAAAATGTATCTCAAATCAAATGGAGTTCGGGAATATGTATGGATGATTTCTCCACTGGCTCTTATTCAGCTGCTGAAGACACTTCAGGTCGCTTTTTAGGAAAGTAAGGGAAACATGAGCTAGAACTCTTGAGCTTTTATCCAAGGTTGCAAGAGatgaaagattaaaaaaatcttGGAGGCATGACCCAGACGCTGCTGAAACGAATGAATCTAACATGTTAACCGAACTCTGAAAACTGGGTTTAACTGATCTATGCTGAGCCTGAATACTGTTCACACAACGACACTGAGCTGATCTTAACTTTAGGGACTAAACCGAGCCGTTCTAAGCAGCTGGACTAACATGGTTTTCCACAATGCGACTGTAGAGAGGACAAAGTTACTCTGGACTGGAATAATCTGGTTTGATATGGACAAAATTACTCTGGACTGGAATAATCTGGTTTGATGTGGACAAAGTTACTCTGGATTGGATTAATCTGGTTTGATGTGGACAAAATTACTCTGGACTGGAATAATCTGGTCTGATGTTGATGTGGACAAAATGACTCTGGATTGGATTAATCTGGTCTGATGTGGatttgtctgtctggctgtaGCTCAGAAGTGTTCGGACTAGGAACGAAAGCcttttacttttcaaaatatGCAACATTACTACAAGCAGGAAAATAGCATCAACAAATGAacagaataataataacaattataatgtgtgtgttataaaAACTACAGTTAATTATTGCAGGGAACatattgtaaagtaactaagaaATTAATTTGTTGTGTGATCTtttcagtgagagagagaaagagaacacAACAAGTATTCTGCAATAGATTTTAAAAGGGAAAGGGAAATGCAGCACCAGAAGCTCTTCAGCATTCAAATCACGTTTGTCCCGACGCCGTGCACTCTGGgaagaaacacattattttccaACAAATTCATGAAGGTTGGAAAGATCCACCCAAAGATATCAGCATGTGTCAGTATCACTTCAGTCTTATTTATCGGTCACTCTTTCATTCAACCTTTCTTTATACTCCAGAGAttattgggcctcattcacgcAATATCTTCCTACGATTTTTCTTAAATTTGTTCTTAAGAAAgtccctaagaaaagtctacgtctgATTCAtgatgtgttcttaaacagcagaattgtttgCAGGTGTGTTCTTAGAGTGATAAATCCCAATGTCTTCGTATATGTAAAGCTCGTGCCCGTTGCTCCTGTGTAGCGTAGGTAAAGGCCCCGTTAATTCACATTAAAGGGCGCGAGATGGCAGGGCCGTGTGCACACTTAGAGAAATGTCGAAAAGACGTGGTAAAGACTGTGGAGGCCTCGACtccaaatgaaagaaaaactaAGAAGTTAGAAAATACGAGACATCGTATTTAGTGCTAAGCAGCAAATAAAACCGGTGCACGGAACGCAATTACTAAACGAGAGAAATATTACATTATAAATTAGAACGGATAAAAAACGGTATAACTACTTATTTTGT

Function

symbol description
kcnd1 Predicted to enable A-type (transient outward) potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in cell projection and membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in dendritic spine; postsynaptic density; and postsynaptic membrane. Predicted to be integral component of membrane. Orthologous to human KCND1 (potassium voltage-gated channel subfamily D member 1).

NR:

description
potassium voltage-gated channel subfamily D member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04891 KCND1, KV4.1; potassium voltage-gated channel Shal-related subfamily D member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799938.1 True 5256 mRNA 0.49 9 39417332 40418704

Neighbor

gene id symbol gene type direction distance location
bcap31 bcap31,LOC102784580 coding upstream 103603 39282009 ~ 39313729 (+)
slc35a2 NA coding upstream 171296 39207730 ~ 39246036 (+)
pim2 pim2,LOC107397278 coding upstream 216925 39190083 ~ 39200407 (+)
otud5a otud5 coding upstream 231299 39132420 ~ 39186033 (+)
LOC120559063 LOC106516718,LOC103372410 coding upstream 613004 38787321 ~ 38804328 (+)
hm13 hm13,LOC102793025 coding downstream 11411 40430115 ~ 40451414 (+)
LOC120559775 NA coding downstream 45847 40464551 ~ 40464926 (+)
LOC120559596 NA coding downstream 50579 40469283 ~ 40469564 (+)
LOC120559068 NA coding downstream 78145 40496849 ~ 40515023 (+)
LOC120559371 NA coding downstream 254327 40673031 ~ 40691622 (+)
G56083 NA non-coding upstream 100339 39315263 ~ 39316993 (+)
G56082 NA non-coding upstream 113487 39303470 ~ 39303845 (+)
G56053 NA non-coding upstream 175113 39237683 ~ 39242219 (+)
G56076 NA non-coding upstream 192633 39224458 ~ 39224699 (+)
G56075 NA non-coding upstream 194515 39219839 ~ 39222817 (+)
G56849 NA non-coding downstream 34243 40452947 ~ 40574799 (+)
G56871 NA non-coding downstream 74445 40493149 ~ 40535009 (+)
LOC120559366 NA non-coding downstream 88993 40507697 ~ 40510459 (+)
G56881 NA non-coding downstream 123671 40542375 ~ 40562636 (+)
G56886 NA non-coding downstream 189860 40608564 ~ 40612303 (+)
G56072 NA other upstream 146904 39182501 ~ 39270428 (+)
si:ch211-180f4.1 LOC103365591,LOC102308931 other upstream 261160 39097131 ~ 39156172 (+)
LOC120559065 LOC107695300,LOC103365588,LOC101480057,LOC102306209,LOC102203592,LOC103460216,LOC101079199 other upstream 333836 38972410 ~ 39083496 (+)
G56033 NA other upstream 518049 38874827 ~ 38899283 (+)
LOC120559073 NA other downstream 681203 41099907 ~ 41103714 (+)
G56947 NA other downstream 700844 41119548 ~ 41136563 (+)
LOC120558563 NA other downstream 2021298 42440002 ~ 42440899 (+)
LOC120558567 NA other downstream 2053192 42471896 ~ 42473941 (+)
zgc:113363 LOC103367255 other downstream 2959642 43378346 ~ 43385991 (+)

Expression


Co-expression Network