LOC120558738 (LOC101484296,LOC106675709)


Basic Information

Item Value
gene id LOC120558738
gene name LOC101484296,LOC106675709
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39808863 ~ 39811404 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799942.1
GCTCATATAAAGAGCCTTTCTTACGGAGCTGCAGGAGACACACTCTGAACTCTCTTTACTTCAGCTGCAGTATCTACTCCGTACTCTTTAACCCGAACAAGAACAGTAACCATTACAACCTAAACATGGACAGCAATTTTGGTTTGAGCAGAAATAATGAGGAAATGAGGATAGTGATGGTGGGGAAGACAGGTATTGGGAAAAGTGCCACTGGAAACACCATTCTGGGACGAAAGTGCTTTGAGTCAAAGTTCAGTGCAATGTCTATGACTGTAGACTGTTCCAAGGGCAAAGCTGTGGTGGATGGGCAACAGGTGGCTGTTATCGACACCCCAGGCCTGTTTGACACCAGGTTTGGCATGGAAAAAACAACTAAAGATATGAGCCAGTGCATCTCTTATGCTGCTCCTGGACCCCATGTGTTCCTGGTGGTCATCCGGCTGGGCAGATACACTGAAGAGGAAAAGCAGACAGTGCAAAAGATTCAAAAAGTCTTTGGCCAGGCTGCAGACAGATACAGCATGGTTCTCTTTACTCATGGGGACCAACTTGAAGACACAACTATTGAAGACTTCTTGAAGGAAAGCCCAGACCTGCAAGAACTTGTGGACGGATGTAATGGCCAGTACCATGTCTTCAATAATAAGCTGAAGGATCACTCTCAGGTCACTGAGCTGCTCCAGAAGATCAGAAATTTAAACCAGAAGAACGGAGGAAGCCACTACACAAACAAGATGTTCCAAGAGGCTGAGAGGGCAATCGAAGAAGAGAAACAACGCATCCTGAAAGAGAACGAAGAGAAAATACGCAAAGTACAACAGGAATTGGAGAGAAAACTTCAGGAAAAATATGAAAAGGAGATGAAGAAAATGAATGAACAACTtcaggctgagagagagagggagaggaaagagagagaggaggagaggaagagggagagggaggatatgaatgaggagagaaagagggagagggaggagagagaatcagagagaaagagagacggagaggagaaagaaagggagtATGAAAACctgatgaataaaatgaagGAACAGCATGACAAAGAactgagagaggaaaaagaaaagttaaagaACAAATATGGAAGTATGGCCAGAGAGAAAGCTGAGGAGAAAAATCCATTTTATCGTTTCTTTGAAATAATTGGAGAAACAGTTGTGGGATGGTTCATATAGTGAGTGATTCAGGCAGCAAAACTACAGAGTATCCATCTAGAAGCTCCTAGTCAAGAATATATGAAACAATTATTTCATCCATAGAACTAAAATCACAATTATCTTTGTTATTATGTGAGTGAATGATAATAAAGctaaatgtatttgttaaagTAGAGCTATATACTGTAGGTTAGTAAGGCCTGTTTACTCCATGGTCTACTCATCAAATCATTCTCTCACACTGCCACCTAGTGTTGCTTTTGCATTATTTTAATAAAGCCCAAGGAGATATTccataatataattattaatacattttactatACAGAACATATAaacgattttctttttttcagttttttgtcagATTTACATGAATGTATTGTAGTAAATCATTACGTTATTTGATTTTGTCATAAAGGCTTTATTTCATGGATTATGTTGATAATTGATGCCACTCAATAACAAGTTATCTATGTGCTGATGTGCTACACTGAACAAGAAATAAAGATGATATTATACTTTTATGTTCTCCAATGCCATTCTCATTGAATTCAAGCACATAATGCATTAATCAAGTAATTCTCTTTCTCGTTCCACAAAATGTAAGCAGAGGTTTCTATTCATTCAgtactttaatgtttaatgtggtTCATGCATGTTATTAAGTACTCTGAATTACCTTTGTGTATAATATGTGCTATTCAAATAAACTTGCTTTGCCATCTCTC

Function

NR:

description
GTPase IMAP family member 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799942.1 True 1912 mRNA 0.39 2 39808863 39811404

Neighbor

gene id symbol gene type direction distance location
LOC120558742 NA coding upstream 48716 39754539 ~ 39760147 (+)
bcap31 bcap31,LOC102784580 coding upstream 495134 39282009 ~ 39313729 (+)
slc35a2 NA coding upstream 562827 39207730 ~ 39246036 (+)
pim2 pim2,LOC107397278 coding upstream 608456 39190083 ~ 39200407 (+)
otud5a otud5 coding upstream 622830 39132420 ~ 39186033 (+)
LOC120558740 NA coding downstream 84561 39895965 ~ 39897486 (+)
LOC120558439 LOC102207434,LOC101484296,LOC102207724,LOC106675709 coding downstream 94286 39905690 ~ 39918513 (+)
ptpn18 NA coding downstream 348603 40160007 ~ 40186156 (+)
hm13 hm13,LOC102793025 coding downstream 618711 40430115 ~ 40451414 (+)
LOC120559775 NA coding downstream 653147 40464551 ~ 40464926 (+)
G56138 NA non-coding upstream 43930 39746452 ~ 39764933 (+)
LOC120558745 NA non-coding upstream 64693 39656666 ~ 39744170 (+)
G56133 NA non-coding upstream 66299 39690778 ~ 39742564 (+)
LOC120558746 NA non-coding upstream 144684 39658758 ~ 39664179 (+)
G56098 NA non-coding upstream 194629 39559928 ~ 39614234 (+)
G56808 NA non-coding downstream 214905 40026309 ~ 40026733 (+)
G56811 NA non-coding downstream 222217 40033621 ~ 40038323 (+)
G56810 gripap1 non-coding downstream 227243 40038647 ~ 40044842 (+)
G56812 NA non-coding downstream 232520 40043924 ~ 40044615 (+)
G56827 NA non-coding downstream 319036 40130440 ~ 40285378 (+)
G56112 NA other upstream 244595 39523146 ~ 39564268 (+)
G56072 NA other upstream 538435 39182501 ~ 39270428 (+)
si:ch211-180f4.1 LOC103365591,LOC102308931 other upstream 652691 39097131 ~ 39156172 (+)
LOC120559065 LOC107695300,LOC103365588,LOC101480057,LOC102306209,LOC102203592,LOC103460216,LOC101079199 other upstream 725367 38972410 ~ 39083496 (+)
G56035 NA other upstream 928481 38879016 ~ 38880382 (+)
G56807 NA other downstream 205581 40016985 ~ 40017315 (+)
G56818 NA other downstream 290981 40102385 ~ 40148620 (+)
G56819 NA other downstream 299054 40110458 ~ 40111288 (+)
G56847 NA other downstream 574924 40386328 ~ 40488120 (+)
LOC120559073 NA other downstream 1288503 41099907 ~ 41103714 (+)

Expression


Co-expression Network