gpkow (gpkow,LOC103467951)


Basic Information

Item Value
gene id gpkow
gene name gpkow,LOC103467951
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12504401 ~ 12511572 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800028.1
TTCACCTACTTCTTTTGGTTACAAACAATAATGGCGTCGCACGGGGAAGATACAGGTCTCCCCAAGTCTGTTGTTTCTGGGGACCAAATAGAGAAAAAACCCGCGGCAGTGTCGTTTGGTTTTACTAAAACAGTTAGCAAATTCAAACCTTCGACTGGAGACGCTGTGGTCAAGAGAGATGACAGAGATTACTTGACCGGAATTGACAGAAAAGAATTGCAAAGTTCAAAACCATCCGAGAAGCCCAAAGAGCTCATCATCCCTCTGATCCAGAAGAACCGCTGGCACAGACCCGACCGAGCAGGCCAGAGCGTGGAGTGTAATGTTAGTGGAGGCAAAACACAAGAAACGACCCAAGCCAATGACTCTGTGGAGTCACAGGCTGTCAAAGAACTCATTGAAGACTCCCGGAGGCAGCTTGAGCAGTGGCAGAATGGCCCTCAGTCAGAAAGCAACCCAAACCTTGCTATCCCCCTGTTGATGCAAAACAAAGTACCTGACGGCTTTGAGGATGGAGATCATGTAAAGGTGGATCTACGTCCTGAATCTTCGACAGAGGCAGATTACGATAGCGTTCCTGTTGAGGCTTATGGACTCGCTATGCTTAAAGGGATGGGCTGGAATAAAGAGGAAGGCATCGGACGCACCTTTAAGCAACATGTGAAGCCAATCGAACACGAGCTCCGTCCAAAAGGTTTGGGTCTTGGAGCTGATCGTTCAGCGATAAAGGACCTGGAGCCCACCAGACATAAGCGCCCCCCCAAGCCAGGCGACGAgcgagagaaggaggaggaactAGTGATGGGCCCAGGCGGCTGTGTCTTGGTGGAGTCGGGGGCACATAAAGACTTGTATGGCAAGATTGAAGGCGTTGATGCAGACAACGCTCGAGTTGTGGTGAAGCTGGCTATTGGCGGCAGGTCAGCGACAATCAGCCAGTATGCTATTAAACTGGTTGGGCGCCAGGAATACGACAAAAACAGCAAAGACCTCAGTCGCCTCGGTAAAGCCCACAAAgacaaggagaaggagaaagagcgAGAGAAGGAGCAACAGAGAcgggaggagaaagagaggcgTAGTAATGGCGACGAGGTAAAACCCAGGTCTTCGGAAAGAGATGGAGGAAAAgatgagaggaagaggaaacacAAAGAATCAAGTCAAGACAGtttCCTCTGTAGAGAGAGGCCTCCAGTGAAAGAGGCAAGGCGACCACCGCCCCCCCCCTCCTGGCTCCAGAGAGACTTGAAAGTTCGCTTCATAGACAAAGCTTTCAAAGGGGGCAGGTACTACAACTCAAAGATGCGTGTAGAGGATGTCCTGACACCgactatctgtgtgtgtcgaACTGAGGAGGGAAGACTGTTAGATGATGTGAAGCAGGGCATGCTGGAAACCATTATTCCAAAAAGTGACTGTGATTCCATAATGGTTGTACTGGGAGAGCACAGAGGACAGGTCGGTCGTATTCTCCAACGGGACAAGAACAAGTGCAGAGCCATGGTTCAGCTCGACCGACATGATGAGAAAGTGTTCACGCTGGATTATGACACCATTTGTCACTATGTAGGAGCAGCAGACCACTGATTCAAATACCCCCTGTCCTTTTCCATCCCATCTgaaatgttgttttgtgttattcaaaaataatggattttaaaagctttcaattttgtaataaaacattgtcAAGAATTGTA
>XM_039800029.1
TTCACCTACTTCTTTTGGTTACAAACAATAATGGCGTCGCACGGGGAAGATACAGGTCTCCCCAAGTCTGTTGTTTCTGGGGACCAAATAGAGAAAAAACCCGCGGCAGTGTCGTTTGGTTTTACTAAAACAGTTAGCAAATTCAAACCTTCGACTGGAGACGCTGTGGTCAAGAGAGATGACAGAGATTACTTGACCGGAATTGACAGAAAAGAATTGCAAAGTTCAAAACCATCCGAGAAGCCCAAAGAGCTCATCATCCCTCTGATCCAGAAGAACCGCTGGCACAGACCCGACCGAGCAGGCCAGAGCGTGGAGTGTAATGTTAGTGGAGGCAAAACACAAGAAACGACCCAAGCCAATGACTCTGTGGAGTCACAGGCTGTCAAAGAACTCATTGAAGACTCCCGGAGGCAGCTTGAGCAGTGGCAGAATGGCCCTCAGTCAGAAAGCAACCCAAACCTTGCTATCCCCCTGTTGATGCAAAACAAAGTACCTGACGGCTTTGAGGATGGAGATCATGTAAAGGTGGATCTACGTCCTGAATCTTCGACAGAGGCAGATTACGATAGCGTTCCTGTTGAGGCTTATGGACTCGCTATGCTTAAAGGGATGGGCTGGAATAAAGAGGAAGGCATCGGACGCACCTTTAAGCAACATGTGAAGCCAATCGAACACGAGCTCCGTCCAAAAGGTTTGGGTCTTGGAGCTGATCGTTCAGCGATAAAGGACCTGGAGCCCACCAGACATAAGCGCCCCCCCAAGCCAGGCGACGAgcgagagaaggaggaggaactAGTGATGGGCCCAGGCGGCTGTGTCTTGGTGGAGTCGGGGGCACATAAAGACTTGTATGGCAAGATTGAAGGCGTTGATGCAGACAACGCTCGAGTTGTGGTGAAGCTGGCTATTGGCGGCAGGTCAGCGACAATCAGCCAGTATGCTATTAAACTGGTTGGGCGCCAGGAATACGACAAAAACAGCAAAGACCTCAGTCGCCTCGGTAAAGCCCACAAAgacaaggagaaggagaaagagcgAGAGAAGGAGCAACAGAGAcgggaggagaaagagaggcgTAGTAATGGCGACGAGGTAAAACCCAGGTCTTCGGAAAGAGATGGAGGAAAAgatgagaggaagaggaaacacAAAGAATCAAGTCAAGACAGAGAGAGGCCTCCAGTGAAAGAGGCAAGGCGACCACCGCCCCCCCCCTCCTGGCTCCAGAGAGACTTGAAAGTTCGCTTCATAGACAAAGCTTTCAAAGGGGGCAGGTACTACAACTCAAAGATGCGTGTAGAGGATGTCCTGACACCgactatctgtgtgtgtcgaACTGAGGAGGGAAGACTGTTAGATGATGTGAAGCAGGGCATGCTGGAAACCATTATTCCAAAAAGTGACTGTGATTCCATAATGGTTGTACTGGGAGAGCACAGAGGACAGGTCGGTCGTATTCTCCAACGGGACAAGAACAAGTGCAGAGCCATGGTTCAGCTCGACCGACATGATGAGAAAGTGTTCACGCTGGATTATGACACCATTTGTCACTATGTAGGAGCAGCAGACCACTGATTCAAATACCCCCTGTCCTTTTCCATCCCATCTgaaatgttgttttgtgttattcaaaaataatggattttaaaagctttcaattttgtaataaaacattgtcAAGAATTGTA

Function

symbol description
gpkow Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human GPKOW (G-patch domain and KOW motifs).

NR:

description
PREDICTED: G patch domain and KOW motifs-containing protein

GO: NA

KEGG:

id description
K13101 GPKOW; G patch domain and KOW motifs-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800028.1 True 1703 mRNA 0.49 11 12504401 12511572
XM_039800029.1 False 1691 mRNA 0.49 11 12504401 12511572

Neighbor

gene id symbol gene type direction distance location
timm17b timm17b,LOC102791711 coding downstream 4936 12494005 ~ 12499465 (-)
LOC120559913 cacna1f coding downstream 10634 12468700 ~ 12493767 (-)
sypb syp,LOC104932998 coding downstream 36398 12452487 ~ 12468003 (-)
plp2 LOC106572444 coding downstream 54733 12440017 ~ 12449668 (-)
fam110a NA coding downstream 89029 12412221 ~ 12415372 (-)
LOC120558830 LOC103354715,LOC100701974,LOC102202290,LOC102794242 coding upstream 103369 12614941 ~ 12635550 (-)
LOC120558433 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 coding upstream 162815 12674387 ~ 12679665 (-)
LOC120558430 NA coding upstream 173714 12685286 ~ 12697057 (-)
wasb was coding upstream 210482 12722054 ~ 12728769 (-)
LOC120559801 slc38a5,LOC104951559 coding upstream 217820 12729392 ~ 12739824 (-)
G49183 snph non-coding downstream 117177 12383502 ~ 12387224 (-)
G49180 NA non-coding downstream 123616 12376979 ~ 12380785 (-)
G49179 NA non-coding downstream 127425 12376288 ~ 12376976 (-)
G49177 LOC108232018 non-coding downstream 128839 12375337 ~ 12375562 (-)
G49178 NA non-coding downstream 131093 12371821 ~ 12373308 (-)
LOC120558434 kdm5c,LOC101072313 non-coding upstream 93308 12604880 ~ 12661242 (-)
G49307 NA non-coding upstream 188857 12700429 ~ 12704105 (-)
G49372 NA non-coding upstream 257248 12768820 ~ 12771419 (-)
G49374 nt5dc2,LOC102799881 non-coding upstream 264345 12775917 ~ 12779320 (-)
G49384 NA non-coding upstream 325948 12837520 ~ 12839132 (-)
prickle3 prickle3,LOC102790576 other downstream 64492 12415603 ~ 12439909 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other downstream 112724 12388981 ~ 12391677 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 281373 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 335192 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 375976 12126886 ~ 12128425 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 412886 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 739414 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 796788 13308360 ~ 13312729 (-)
LOC120558461 NA other upstream 895213 13406785 ~ 13413178 (-)
zgc:66479 NA other upstream 1235831 13747403 ~ 13753866 (-)

Expression


Co-expression Network