bcap31 (bcap31,LOC102784580)


Basic Information

Item Value
gene id bcap31
gene name bcap31,LOC102784580
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39282009 ~ 39313729 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800155.1
CGGAAACCGGAAGTGTTTACAACAGGAAGCTAGGCTAACTGTCCAACTGACGGAGCAGCAAGAGTGTTTAAAGCTCAACAGAACAGCGGCGCGTGGAGTTTCTCTGAGTGTTTTTGGGATTTATTTTAGGAGTCAGGATGAGTCTGCAGTGGACGGCCGTGGCCACCTTCCTGTACGCTGAGGTCTTCTTTGTTCTGCTGCTCTGCATCCCCTTCATCTCCCCGAAAAGGTGGAATAATATCTTCAAGTCTCGGATCATCCAGACCATCGCTCTCTATGGAAACACTTCGTTCATGGTGGCCATCGCCATCCTTGTCTTCCTGCTTatcgATGCCTTCCGTGAGGTGAGGAAATACAGCGTGACGGAGAAGGTGGATCTGACCAACAACCCGGTGGCCATCGAACACATCCACATGAAACTGTTCAGAGCTCAGAGGAACGAGTACATCGCTGGCTTCGCTCTGCTGCTCTgcctGTTGCTGCGTCGCCTCGCCACCCTGCTCTCCCAGCAGGCCTCGCTCATGGCCTCCAACGAAGCCTTCAAGAAGCAGGCGGAGGGCGCCAGCAACGCCGCCAAGAAATACATGGATGAGAACGAGCTGCTGCAAGAgAAACTCCGTGATGCTGGCGTGGAGGTGCCGGAGGCCGGGAAGAAGGGAGCCGGACCGCAGGAGGAGAACAAGACTCTGAAAGAGGAGGTGAAGACCCTGAAGGAGAAGCTGGACGCCACCAAGAAAGCTCTGCAGAAGTCGGACAGTGACGTCCGTGCGATGAAGAAACAGAGCGAGAATCTGACGGTTGAGTACGACAGACTGCTGGAGGAACACAGCAAACTgctgGCGACCAGCGACAAGAAGTCAGACTGAAACACGAAGACGGTTTCCAGCTTCGCTCCTCTTCCTCGCCGTCCTCGACTTGCACGTACTTCTCTGAGTTTACCCGACGTCGCCGGGCTGTGATTGGTTCATTACATGTGGTTTACAAAATATCTTTTGACTGTCGGAGCTtcgtcagaagaagaagaagatgagacgaaaaaaaaaaaaaaagattgttggcTGTCTGTgaaactttctttctttctgacgaggtattttttgtttgttttctgatttactgAGAAACTCAGACAGATCAGATCTGATCATTCCCCGTTTCCCTGCCGCCGCAGAGCAGCAACGACCTGAACTTCAGTCCTGCTTTCTGCACGAAACGGACGAGTTTTATTCCAAAATCTAAAGGcccaatgttttattttttataaagtgctcatattatgttca

Function

symbol description
bcap31 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and protein localization to endoplasmic reticulum exit site. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in deafness, dystonia, and cerebral hypomyelination and sensorineural hearing loss. Orthologous to human BCAP31 (B cell receptor associated protein 31).

NR:

description
B-cell receptor-associated protein 31 isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14009 BCAP31, BAP31; B-cell receptor-associated protein 31

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800155.1 True 1283 mRNA 0.51 8 39282009 39313729

Neighbor

gene id symbol gene type direction distance location
slc35a2 NA coding upstream 35973 39207730 ~ 39246036 (+)
pim2 pim2,LOC107397278 coding upstream 81602 39190083 ~ 39200407 (+)
otud5a otud5 coding upstream 95976 39132420 ~ 39186033 (+)
LOC120559063 LOC106516718,LOC103372410 coding upstream 477681 38787321 ~ 38804328 (+)
hcfc1b NA coding upstream 609365 38628960 ~ 38672644 (+)
kcnd1 kcnd1 coding downstream 103603 39417332 ~ 40418704 (+)
LOC120558742 NA coding downstream 440810 39754539 ~ 39760147 (+)
LOC120558738 LOC101484296,LOC106675709 coding downstream 495134 39808863 ~ 39811404 (+)
LOC120558740 NA coding downstream 582236 39895965 ~ 39897486 (+)
LOC120558439 LOC102207434,LOC101484296,LOC102207724,LOC106675709 coding downstream 591961 39905690 ~ 39918513 (+)
G56053 NA non-coding upstream 39790 39237683 ~ 39242219 (+)
G56076 NA non-coding upstream 57310 39224458 ~ 39224699 (+)
G56075 NA non-coding upstream 59192 39219839 ~ 39222817 (+)
G56069 NA non-coding upstream 160281 39118042 ~ 39121728 (+)
G56065 NA non-coding upstream 166457 39092662 ~ 39115552 (+)
G56083 NA non-coding downstream 1534 39315263 ~ 39316993 (+)
G56094 NA non-coding downstream 52787 39366516 ~ 39497157 (+)
G56097 NA non-coding downstream 59537 39373266 ~ 39513272 (+)
G56103 NA non-coding downstream 114097 39427826 ~ 39615608 (+)
LOC120558744 NA non-coding downstream 124146 39437875 ~ 39444660 (+)
G56072 NA other upstream 11581 39182501 ~ 39270428 (+)
si:ch211-180f4.1 LOC103365591,LOC102308931 other upstream 125837 39097131 ~ 39156172 (+)
LOC120559065 LOC107695300,LOC103365588,LOC101480057,LOC102306209,LOC102203592,LOC103460216,LOC101079199 other upstream 198513 38972410 ~ 39083496 (+)
G56033 NA other upstream 382726 38874827 ~ 38899283 (+)
G56032 NA other upstream 386346 38859773 ~ 38895663 (+)
G56112 NA other downstream 209417 39523146 ~ 39564268 (+)
G56127 LOC101484296,LOC102207998 other downstream 342930 39656659 ~ 40011817 (+)
G56807 NA other downstream 703256 40016985 ~ 40017315 (+)
G56818 NA other downstream 788656 40102385 ~ 40148620 (+)
G56819 NA other downstream 796729 40110458 ~ 40111288 (+)

Expression


Co-expression Network