arhgef3l (LOC102798503,LOC102311840,LOC101488135,LOC100693794)


Basic Information

Item Value
gene id arhgef3l
gene name LOC102798503,LOC102311840,LOC101488135,LOC100693794
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19689551 ~ 19697541 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800221.1
TGTGAGATGAGGAAGGAGTACACTGAACTCTGACGAGCTCCATGCAAACAAGTCGCTGTAAGTTACTGAAACGCAGAAAAGACTGCTGTGAATttggattttaacccttgtattTTGAGAATGTGTAATGTTTCTGTAAAGATGCATTGAAGGCAAAGAAAAGATGGATGTGGAGGAGACTGGTGAAACGAGGACTTTCTGGTCTGCAGCGCAAGGAGAGACACAGTCCATCGCCTGTGACCATGCTGGGaagaagaGAAAACAAGACCCGGCCCCTGAACCTGTTATCAGAATCATAGAGgatgaagaggaagatgaggaggcTGAGACGATGTCTGACCACATGAGGAATTCAGAGGAGCCCAGTAATAAAAGGGTCAAACCTGTGGTTAAGTCCAACAGCCTAACCGGTGTCATAACCCCggtgaagacccctgctctgaAACGCATTGGACAGTCCATTTCGCGGTCCATTAGTTTCCGCACAGAGGCTCGACCTTTGCCCCCGGCTCCCCTGCGCCCTCGCACGAAGGCCTCGTCATTTCCACGCCGGCGCAACAGCCAATGTTGGAGTGACACTGTGGAGAGTCATGACCTCACTGCAAAGGAGATCAAACGACAGGAGGTGATCTATGAGCTGACTCAGGGTGAGAAACAACTCATTGAGGACCTCAGTCTGGTCAAGAAGGTGTACTATGAGCCCATGCTGAAGTTGGACATCCTGACAGAGAGTGAGCTTGGACAGATCTTTGGTACACTGGACTCTCTCATTCCTCTCCATCAAGATCTTCTGTATCGTCTTGAGCGGCTGAGGGGATTAGAGAAGACAGTCGGAGAGGTGGGGCCTACTCTGATGAACTGGTTTCCCTGCCTGGAGGCCTATGTTACATACTGCTGTAACCAGGTGTGTGCCAAAGCGCTGCTGGACCAGAAAAAGAACGAGAAAAAAGTTGAGCACTTCCTGCGCTTGTGTCAGGAGTCTTCGTTTAGTAGGAAACTGGACCTGTGGAACTTCCTGGATCTCCCTCGGAGCCGTTTGGTCAAATACCCCCTCCTGTTGAAAGAGATACAGAAGTGCACGCCTCCAGAGCACCCGGATGAGGACACATTATCTGATGCTTTGGAGCTGATCCATAGCATTGTGGCGGAGGTGAACAAGAAGACAGGAGAGGCGGAGTGTCAGTTTTTCAGGCGGGGTCTCACCTACCTCGAAGAGAGTCAGAGACTACCAGAGATCCAGCAGTCCCGCTTCCTCTACTGCCACGGAGAGCTCAAGAACACCAAGGGCCAGCGGCTGCATGTATTCCTGTTTGAGCTGGCTTTGGTGTTGACCAGGCCGGGGGAGGACAGAGAAGGAGGCCAGCTGTTCCATGTGTACAGACAGCCTCTTCCCAACGACTTGATAAATCTGGAGGAGATCCCAGATGGGGAGGCTGGCGGAGGGGGCACCTTCAGGGGAGCCTTCACTGGAGGAAATGATAAAGTGAAGAACTGTTTCCGTGTGAGCAGCAGAGGGCGCTCCAAAGCTCACCCATACAGCCTGCAAGCCAACGACTCCTTCAGCAAGCAGCAGTGGATCACTTGTCTGCGCCAAGCGATTGTCCGGTCACGAGATAGAAGCGCTCACACCATCCAGTCGcacctctcccctctccctgaTCCCGCCCTGTATCACATAGCCGATCTCAGCCTCAGCTcggacacagaaatggcagaCCATACCAGTCGCTGACTGATGATCTCAGGAGGCCTGGGGAGTGTCTGTGGATCTGTACATTGACATTGGAGAGAATAAAATATGGGACTGTTTGTGAAAAGATGATTGTGCTTAGATACACGTAGAATTTCCTACATGGATTTAGTCTTTTGCTGCATTTGCTGATGGATTGTGTGATTGTGGTGATGTTAACTGTACAGCTTGAGAACAGTATTACTGAATGTGAATTTACagtgtaaaatgtttttgtttttttaataaactgacacttaaaagtt
>XM_039800222.1
gaagaagaGAAAACAAGACCCGGCCCCTGAACCTGTTATCAGAATCATAGAGCGGAAGTTAGTCAACCTTACCTTTGTGACCACAATGCTGAGTGCAGAGCTGATGAGAGATGTGAACATCATGTTTAGCTGTGCAGCCACAAGCTCCCCGAATACACAAACCTCTAAATGTTGTTTTAACATCAGTCACATCCTGCCACATTTTAGCCACTGTGATTTTCCACTTTTCGAGTTGACCTGTTTTGCTGGCATCTTTATCACATGTATCACGCATAAATTTTTACTGTAGGTATTTAAATACATCTCACTCTGATACTGCAGTGACTATACAGCTGATGTGGTTAGTGTGGCACAAAACAGGCAGACATCTTGTATTTTACTACAGAGCCTTCTTCCTCTTTGAAAGAGTCACACAGGAAATGAGAGATCCGCACCATGCAACAAATCACCCATCTcgacatctctctctttctcaagtTCACTTCAAGCTTGTTCTGTTGTGTGTGACCTGTTGTGTGTCATcaggatgaagaggaagatgaggaggcTGAGACGATGTCTGACCACATGAGGAATTCAGAGGAGCCCAGTAATAAAAGGGTCAAACCTGTGGTTAAGTCCAACAGCCTAACCGGTGTCATAACCCCggtgaagacccctgctctgaAACGCATTGGACAGTCCATTTCGCGGTCCATTAGTTTCCGCACAGAGGCTCGACCTTTGCCCCCGGCTCCCCTGCGCCCTCGCACGAAGGCCTCGTCATTTCCACGCCGGCGCAACAGCCAATGTTGGAGTGACACTGTGGAGAGTCATGACCTCACTGCAAAGGAGATCAAACGACAGGAGGTGATCTATGAGCTGACTCAGGGTGAGAAACAACTCATTGAGGACCTCAGTCTGGTCAAGAAGGTGTACTATGAGCCCATGCTGAAGTTGGACATCCTGACAGAGAGTGAGCTTGGACAGATCTTTGGTACACTGGACTCTCTCATTCCTCTCCATCAAGATCTTCTGTATCGTCTTGAGCGGCTGAGGGGATTAGAGAAGACAGTCGGAGAGGTGGGGCCTACTCTGATGAACTGGTTTCCCTGCCTGGAGGCCTATGTTACATACTGCTGTAACCAGGTGTGTGCCAAAGCGCTGCTGGACCAGAAAAAGAACGAGAAAAAAGTTGAGCACTTCCTGCGCTTGTGTCAGGAGTCTTCGTTTAGTAGGAAACTGGACCTGTGGAACTTCCTGGATCTCCCTCGGAGCCGTTTGGTCAAATACCCCCTCCTGTTGAAAGAGATACAGAAGTGCACGCCTCCAGAGCACCCGGATGAGGACACATTATCTGATGCTTTGGAGCTGATCCATAGCATTGTGGCGGAGGTGAACAAGAAGACAGGAGAGGCGGAGTGTCAGTTTTTCAGGCGGGGTCTCACCTACCTCGAAGAGAGTCAGAGACTACCAGAGATCCAGCAGTCCCGCTTCCTCTACTGCCACGGAGAGCTCAAGAACACCAAGGGCCAGCGGCTGCATGTATTCCTGTTTGAGCTGGCTTTGGTGTTGACCAGGCCGGGGGAGGACAGAGAAGGAGGCCAGCTGTTCCATGTGTACAGACAGCCTCTTCCCAACGACTTGATAAATCTGGAGGAGATCCCAGATGGGGAGGCTGGCGGAGGGGGCACCTTCAGGGGAGCCTTCACTGGAGGAAATGATAAAGTGAAGAACTGTTTCCGTGTGAGCAGCAGAGGGCGCTCCAAAGCTCACCCATACAGCCTGCAAGCCAACGACTCCTTCAGCAAGCAGCAGTGGATCACTTGTCTGCGCCAAGCGATTGTCCGGTCACGAGATAGAAGCGCTCACACCATCCAGTCGcacctctcccctctccctgaTCCCGCCCTGTATCACATAGCCGATCTCAGCCTCAGCTcggacacagaaatggcagaCCATACCAGTCGCTGACTGATGATCTCAGGAGGCCTGGGGAGTGTCTGTGGATCTGTACATTGACATTGGAGAGAATAAAATATGGGACTGTTTGTGAAAAGATGATTGTGCTTAGATACACGTAGAATTTCCTACATGGATTTAGTCTTTTGCTGCATTTGCTGATGGATTGTGTGATTGTGGTGATGTTAACTGTACAGCTTGAGAACAGTATTACTGAATGTGAATTTACagtgtaaaatgtttttgtttttttaataaactgacacttaaaagtt

Function

NR:

description
rho guanine nucleotide exchange factor 3-like

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800221.1 False 1995 mRNA 0.50 13 19689551 19697541
XM_039800222.1 True 2219 mRNA 0.49 11 19689551 19696812

Neighbor

gene id symbol gene type direction distance location
usp21 LOC104956301,LOC100694066,LOC103362808 coding downstream 191 19684047 ~ 19689360 (-)
LOC120558915 LOC103362809,LOC100696538,LOC104956202,LOC102311006,LOC102199655 coding downstream 5604 19679491 ~ 19683947 (-)
rbm10 LOC104956217 coding downstream 10231 19668096 ~ 19679320 (-)
lrrc23 lrrc23 coding downstream 21639 19663372 ~ 19667912 (-)
tktb LOC104956237,LOC103362814,LOC108235280,LOC101069588 coding downstream 26698 19651238 ~ 19662853 (-)
uba1 uba1 coding upstream 487 19698028 ~ 19716311 (-)
LOC120559929 NA coding upstream 2232 19699773 ~ 19699894 (-)
LOC120559928 NA coding upstream 3789 19701330 ~ 19701451 (-)
LOC120559930 NA coding upstream 9138 19706679 ~ 19706800 (-)
camkvl LOC104956158 coding upstream 19227 19716768 ~ 19753439 (-)
G51236 NA non-coding downstream 92043 19595594 ~ 19597508 (-)
G51228 lrtm1,LOC102799284 non-coding downstream 230146 19456652 ~ 19459405 (-)
G51147 NA non-coding downstream 274356 19327652 ~ 19415195 (-)
G51122 apeh,LOC103467450 non-coding downstream 461646 19227321 ~ 19227905 (-)
G51088 NA non-coding downstream 760716 18922863 ~ 18928835 (-)
G51266 NA non-coding upstream 127870 19825411 ~ 19850660 (-)
G51468 NA non-coding upstream 365567 20063108 ~ 20063536 (-)
G51467 NA non-coding upstream 368321 20065862 ~ 20073593 (-)
G51518 NA non-coding upstream 601510 20299051 ~ 20300666 (-)
LOC120558923 NA non-coding upstream 670445 20367986 ~ 20382875 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 611770 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 802656 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 1587979 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 1794469 17835080 ~ 17895082 (-)
G50712 birc7 other downstream 1999791 17688115 ~ 17689760 (-)
LOC120558911 LOC103362803,LOC100693258 other upstream 101664 19799205 ~ 19815318 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 1122630 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 1470363 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 1501799 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 2272511 21970052 ~ 22015043 (-)

Expression


Co-expression Network