apobec2b (LOC103374057,LOC106098463,LOC101478792)


Basic Information

Item Value
gene id apobec2b
gene name LOC103374057,LOC106098463,LOC101478792
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20306440 ~ 20309466 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800254.1
ctatttctgtaaatgcactAGGGTTATCTCTCTACTTACCCTGAGCTAtcgctctcttgctctctctccctccctctctttatcTAACACTGTCACCCACTTGTGCAAAATCATGGCCGACAGAAACAGCCGGGTTAGTGttaagaggaaagagaagaaggtagaaaacaaaacaaaggatgACAAGGAcaaagaaaaggagaaggagaaaaatgtgaaaaagccTGACAAACTTGTGAAAAAGCCAGAGAAGACCCCAGAGAAGACCCCCGAGCAGCCCAAGATGGATGAAGAGAAGAGGAATGGGGAAAGTGGAGGCGCAATAGGAGCGGAGGCAATAAACAGTGAAGAAAATGGAGAGTTTCAGCCCATAGAATTGCCACCGTTTGAGATTGTCACAGGGGAACAGATGAGCCCGTTCTACTTCAAGTTTCAGTTCAGGAATGTGGAGTACTCATCAGGGAGGAACAAGACCTTGCTGTGTTTTAGAGTGGATACACCAGGAGGCAGCACAGAGCCACTGAAAGGTTATATGGAGGATGAACATGCCACGGCTCATGCTGAAGAAGCATTCTTTCAACAGGTGCTCCCTATTGCTTCCCAAGAGTATGAAGTCACATGGTATGTATCATCCAGTCCTTGTGCGGCTTGTGCAGCCAAGTTGGCCAACATCCTCCAGCAGCGCAAGAAGGTCCGTCTCTGCATGTTCTGCTCCCGTCTCTTTGACTGGGAGGAGCCAGAGATAGTAGAAGGCCTCCGGGCTCTGGTGAGCGCCGGCTGCAAACTGCGGATGATGAAGCCGGTTGACTTCGTACATGTTTGGGAAACATATGTGGAGAAGGAGGACCTGACCTTTGAACCCTGGGAGGATTGTCAGGAGAACTATGACTACTATGTGGAGAAACTGGCTGATATCCTCAAGTAGATGTACTTCATGCACACGATGGACAAGATCTCCCCACTGACTCTCCACTGGTTGAACGTTTGTTTCTTGCAGTCTCATCTGACGGTGCAGATCAGTATAAGTTTGAATGAACACTCATGGcaacattttgtaatttttattttgataatttcATAGGGAGACACAAAATGCTTGATTGGCATTACTGAAGAATCACCTACTGTTGAAAAATATAATCATTTTTAAAGAAGAAAGCAATAACAGTAGACTAACTTACATTTACTCACATCTGGGGCCAGATGCATCAAATCCCCCAACTAAAACAGTgtgtacagtacacacaaagacagaaatatgCATAAGCATGTATATGCACCTCTAAAACATAATTGCGTATATATCTTAGTAATTTGTAGCTCTCATATTGAACCAGACTTTACAAAGAGCTTCACAAATCACGATAAAATCAAAAGATCATCGATGATAgctcaaatgtaaaaaaaagaaagaatgatAACAATGCATTACTCATAAATAGTTTAAAATTAAGTTTATGAATGCACTTTTGATTGGAATTTTACAGAGCACTGTGTAGACCACAATATAATAACAATCATTTAAATGATGTGTGGCAAAAGGTGTACGCATGTTTTTGGTGCGTACACATCGTTTATACATCTGGCCCCAGGTGTTTGCTTAAGGAGGATTAATAACATCTCCTGCAGATCAATACTTATGTACAGTGCATATAATAATTGCTAACAATAAAAGCTAACCATGTATATGATTGATGCTGCTCACATAAATAATGTTTCATATTTTAACAGTTCATCAATACAATGATGTGaattaaatatatacagttCTAACAGTATTGTGCTACAAAGTAATGTTCAGTGTCAGCCAGTCTGTTGGTTCAGGGTGCAATATCCCAATATATTTTAATTCCCATTAAATTTGGTACAAAACATT

Function

NR:

description
PREDICTED: probable C->U-editing enzyme APOBEC-2

GO: NA

KEGG:

id description
K18772 APOBEC2; C->U-editing enzyme APOBEC2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800254.1 True 1876 mRNA 0.41 4 20306440 20309466

Neighbor

gene id symbol gene type direction distance location
csrp1a csrp1,LOC102794587 coding downstream 137549 20158654 ~ 20168891 (-)
phlda3 phlda3,LOC101480121 coding downstream 149081 20155393 ~ 20157359 (-)
tnni1a tnni1,LOC108235179,LOC101156408,LOC103384557 coding downstream 157206 20143922 ~ 20149234 (-)
lad1 NA coding downstream 164359 20134937 ~ 20142081 (-)
tnnt2a tnnt2 coding downstream 171808 20120845 ~ 20134632 (-)
si:dkey-109j17.5 LOC102081939,LOC102793824,LOC103374063,LOC101477867,LOC102209747 coding upstream 1960 20311426 ~ 20316022 (-)
ccdc115 NA coding upstream 7726 20317192 ~ 20321532 (-)
trnae-uuc_54 NA coding upstream 11301 20320767 ~ 20320838 (-)
fkbpl NA coding upstream 15985 20325451 ~ 20328339 (-)
LOC120558914 LOC103360972,LOC103385138,LOC106524412,LOC101071942,LOC107092037 coding upstream 100071 20409537 ~ 20431731 (-)
G51518 NA non-coding downstream 5774 20299051 ~ 20300666 (-)
G51467 NA non-coding downstream 232847 20065862 ~ 20073593 (-)
G51468 NA non-coding downstream 242904 20063108 ~ 20063536 (-)
G51266 NA non-coding downstream 455780 19825411 ~ 19850660 (-)
G51236 NA non-coding downstream 708932 19595594 ~ 19597508 (-)
LOC120558923 NA non-coding upstream 58520 20367986 ~ 20382875 (-)
G51544 NA non-coding upstream 132030 20441496 ~ 20441807 (-)
LOC120558476 NA non-coding upstream 352887 20662353 ~ 20663577 (-)
G51574 NA non-coding upstream 413184 20722650 ~ 20722998 (-)
G51577 NA non-coding upstream 416161 20725627 ~ 20725901 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 491122 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 1228659 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 1419545 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 2204868 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 2411358 17835080 ~ 17895082 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 510705 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 858438 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 889874 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 1660586 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 1913683 22223149 ~ 22229421 (-)

Expression


Co-expression Network