LOC120558914 (LOC103360972,LOC103385138,LOC106524412,LOC101071942,LOC107092037)


Basic Information

Item Value
gene id LOC120558914
gene name LOC103360972,LOC103385138,LOC106524412,LOC101071942,LOC107092037
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20409537 ~ 20431731 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800269.1
ATGGGAGGGTCTTGTGAGTATCGGGTTGGTCGCTTTACTTTGAGTGAGTAGGCTATAGCTGCTGCTTCAAGGGACGGAAGACGGCAGGAAGGGACACACGGAGGTCTTTGATATTTGAAAGCACACTCTGGGAAAGATGGCAGCCATCAGGAAGAAGTTGGTGATAGTTGGGGATGGTGCATGTGGGAAGACCTGTCTGCTCATCGTCTTCAGTAAGGACCAGTTCCCAGAGGTCTACGTCCCCACTGTGTTTGAGAACTACATCGCTGACATTGAAGTGGATGGGAAACAGGTGGAGTTAGCGTTGTGGGATACAGCAGGCCAGGAAGACTATGACCGACTGAGGCCTCTCTCCTACCCTGACACAGATGTTATCCTCATGTGCTTCTCCATAGATAGCCCCGACAGTTTAGAGAATATTCCCGAGAAATGGACGCCTGAAGTGAAACACTTCTGTCCCAATGTCCCGATCATTCTCGTGGGTAACAAGAAGGACCTGAGGAATGATGAACACACACGAAGGGAGCTGGCCAAGATGaaacagGAGCCTGTCAAATCTGAGGAGGGCAGAGACATGGCCAACCGCATCAGTGCCTTTGGCTACTTGGAGTGCTCCGCCAAGACAAAGGATGGCGTGCGGGAGGTGTTTGAGATGGCCACCAGAGCAGCGCTACAAGTCCGCAAGCGCAAGAAGAGGGGAGGCTGCCAGCTACTGTGAGGGGACGGAGTTTGTTGGCCAATCAGCACCTGAGGGAGGACTCCCTACGCACAGAGCAAACTATAGAGAAACCTTAAATCAATGGCTTCCGTGGACTATACTTACTTCACAGATGCAGATATACCACAGGAGAATATAAAAGACTGACACACCTGtttaaaagcaaaacaaatcagcttttttttttattttttaaactctcTGCTACTCACTTTGTTTCTGTTTGCTGTTTCCCTCCACTAGCTAGTTACTAGTTTGTGTGAAGGACCTGTCCCTTCCTCCTATATgaatgtatgtttgtatttatATGTGCATATACTTTACAAATATATCATGTCTGTGTTATGATTGTTTACAGAGAAGGGTCTTGTAGGTCACATGTCCAGTGAATGGCAAGATAGTTTTTAGATTTGCTTTAATAGTATGGCACTTGCTTCTATTCAACCTGCATGCACCCCTCAGTGTCCTTTTTATAAATCAGTTTGTCAGGAAACCCACGTCACACCACTATTACTGATAATTTTACACCCTCAACATCCTATTTGAGCATGTGCTGAGTCAGCAGAGCTCCCCCCCCCCAGCTTTCTATTCTGACATAAAGGACTAAATTAGGAGCCTGTTCACTCTGCATTAATCCACTGAAACCTAGATAAATTGAAGCTGCGACGACTATTTTATGGAGAGGTTTTGGACTGCACCTTGCTCCGTCTCTTTTCTATGGCGATAGCTTAAGCCGGCACTGGAGACAGTGGTCTATTGTCATGGACACAATACTCTCAGTCACGCCAACACTGGCTCCGACAAGACTTGTCACTACCACTGTCTATCACCAACGTCTTGCCAAAACACCCTCCTGTCTGAACTCTGTACTGTTGATTCAGCTCCAGTATACAGTCATTATGCATTGCTGTGTACTGAATTTACAGGTTCATGGATGCACTCCTGtatacagccattttaatattCAGATTATAGGCCTATTCCGTCCATAAAAGTTTGAATACATTTCCAGCTGCCTGCGTGACCGTTTAAAGGTTGTCATTACCAATGTGCCATCTCCTCAGTTTGGCTCAGTAGCTCTCTTTGAAAGCTACTCCATTTGAAATTGGGGCTTTGTTGTTGTGTAAGGCCTGTATTTAACACTACACACAAGGGACATTCCTTGAAATGCGATTGGAATGTTTTATATCTGAGAGCGTAGCCCAGTCAACATTTTTCTCCTGAGCAGCCATTAAAGATCATTGAAGTGGGGCCAACTAATAAACTGTGGTGTGATTGGGCTCAGAGCTGAGacggtttttattttattttttcaacagaATTGTGATGAAAATTGTAAGATCCAACTTTGTCAGTGACTACAATGATTATAATTAATCTTTCTCCAGATGTGTATTGTCATCACTAAGTTACGGAATCCTCAAACCACCTCATCTTCTTCCAGGCAGCCCTCTGATATAGTTAGTGTGTGCTTCTGTATCATGGCTGGAGCAAAGACATGACTTACAAAGAGCCCTGAACACTGTTAGTATATGTAGTGGTCCCTGCATTGATCTTACCACCATCATAAGCTACAACTATGGTAATCCTTTTAGCCAGTACATTCAGATCCATAGAGATCAGAATGTGGTGGGCTTTGGCTAATTTCTGGACAGTGcctctatgtatgtatgtcaaacACCATAATTCAAGAGAAAATGTTGATTGTGATGACGCTTTATAAACAGGAGTGGGATGTGTTGAAACATgttattaaagtatttttgaATTACTA

Function

NR:

description
PREDICTED: rho-related GTP-binding protein RhoC

GO: NA

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800269.1 True 2492 mRNA 0.44 5 20409537 20431731

Neighbor

gene id symbol gene type direction distance location
fkbpl NA coding downstream 81198 20325451 ~ 20328339 (-)
ccdc115 NA coding downstream 88005 20317192 ~ 20321532 (-)
trnae-uuc_54 NA coding downstream 88699 20320767 ~ 20320838 (-)
si:dkey-109j17.5 LOC102081939,LOC102793824,LOC103374063,LOC101477867,LOC102209747 coding downstream 93515 20311426 ~ 20316022 (-)
apobec2b LOC103374057,LOC106098463,LOC101478792 coding downstream 100071 20306440 ~ 20309466 (-)
copz1 copz1 coding upstream 298375 20730106 ~ 20740959 (-)
hnrnpa1b hnrnpa1 coding upstream 319852 20751583 ~ 20754530 (-)
hoxc1a LOC104956907 coding upstream 368368 20800099 ~ 20808534 (-)
LOC120558390 NA coding upstream 385687 20817418 ~ 20820599 (-)
hoxc4a hoxc4 coding upstream 396996 20828727 ~ 20833997 (-)
LOC120558923 NA non-coding downstream 26662 20367986 ~ 20382875 (-)
G51518 NA non-coding downstream 108871 20299051 ~ 20300666 (-)
G51467 NA non-coding downstream 335944 20065862 ~ 20073593 (-)
G51468 NA non-coding downstream 346001 20063108 ~ 20063536 (-)
G51266 NA non-coding downstream 558877 19825411 ~ 19850660 (-)
G51544 NA non-coding upstream 9765 20441496 ~ 20441807 (-)
LOC120558476 NA non-coding upstream 230622 20662353 ~ 20663577 (-)
G51574 NA non-coding upstream 290919 20722650 ~ 20722998 (-)
G51577 NA non-coding upstream 293896 20725627 ~ 20725901 (-)
G51589 hoxc10,hoxc8,hoxc11,LOC102193660,LOC100690382,LOC101470732,LOC103467376,LOC102786831,LOC106947643,LOC106565461,LOC105016991,LOC103385114 non-coding upstream 430495 20862226 ~ 20952782 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 594219 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 1331756 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 1522642 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 2307965 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 2514455 17835080 ~ 17895082 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 388440 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 736173 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 767609 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 1538321 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 1791418 22223149 ~ 22229421 (-)

Expression


Co-expression Network