LOC120558915 (LOC103362809,LOC100696538,LOC104956202,LOC102311006,LOC102199655)


Basic Information

Item Value
gene id LOC120558915
gene name LOC103362809,LOC100696538,LOC104956202,LOC102311006,LOC102199655
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19679491 ~ 19683947 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800270.1
tataaaataatacaattgtAACATAGTTTAGACATTACATTTCCCGCAGCCTAATGACGTCCTTGTGCACATGCGTATTAGCGGTGGGCGGAGTTTTCCAGTCGgtcaggaagaggagaaaggcGGACACAGAAACATCAAGCGATGGCTGCTATCAGGAAGAAGTTGGTGATAGTTGGGGATGGTGCATGTGGGAAGACCTGTCTGCTCATCGTCTTCAGTAAGGACCAGTTCCCAGAGGTCTACGTCCCCACTGTGTTTGAGAACTATGTGGCAGACATTGAAGTGGAtgggaaacaggTAGAGCTAGCACTTTGGGATACAGCAGGTCAAGAAGACTATGATAGACTGAGACCTCTCTCCTACCCCGACACTGATGTTATTCTCATGTGcttctctgtagacagccctgACAGTTTAGAGAATATTCCAGAAAAGTGGACACCTGAAGTGAAACACTTCTGTCCAAATGTTCCCATCATCCTGGTGGGCAATAAAAAAGATCTGCGCAATGATGAGCACACCAGACGAGAGCTTGCCAAAATGAAACAGGAGCCAGTTAAATTTGAAGATGGCAAAGAGATGGCGAACCGCATCAGTGCCTACGGCTATCAAGAATGTTCTGCCAAAACCAAAGATGGTGTGAGGGAAGTCTTTGAGATGGCAACTAGGGCAGCACTGCAGGCCAAGAAACGTGGCAAGAAATCTACCTGTCTTCTGTTATAGGCTCTGGGAGAAGAGGCAGCTTCCATTAAAATTTGACATAGGGGAGAAAATTGGGGAGGTTTTGTGGATGCTCAATTTCTTATCACCCAATTATCCTCAGCAAATTAAAGCAGGTCTTAAATTATTTGTTAGGCCCCTACATCTTGTTCCTTGGTCTGTACATTAGGTTAAGTGCCATTTTGCTCTCGCCTATCAAAAACTTTCAGATCTAGAAGTTTGTAGGGCAGGTGGTGGGGTGTGATTTGAAGTTGAGTAGATTTAGACGGGGTTAAAATGTGCCATGATGGGAATGAAGAGAGAAAAGGTCCTGACCAGGCCAAAGACAATAGGGACatgtgaaaaaaagacagaaatataaaatatgtttgaattaatgctgcgttccaggcaacccgtaactcatgttttcacaaccttctacccatGAAAGCGCCCTGGAACGTCAGTCACACCCGTAACTTACTActcgtgaactcgtaccagatcgttgtactcccaaTTAGTTtgtgatgtcacacacacataaacaacaatggcgacccctgttgatgctgtacagacgccggtgattaacggcgaaaaatataaataaataggcAATGTAAAGTAATTCCTTTAACGTTGGGTAGCCTAACCTGAACCCTGCCAACGGCACAATGTTTTGCTAGCCAGCTTGTGACTTTgactggaacgctaccaagtcgtgacttgaagtcgtaaattactggctaaaaattgtgtctggaacgcagcataagacCATGTCTAAGTGGATTTTACACAGTATCGCCTACATGTAGTGCCTTGAGAGCAGTGGTCAAAAAGAATTAGTTGTGGGGTAGGGATTCATAACTTAGATGGGGTATTATTTAGTCATTTGTAGTGTCCACACATCACATTTGTGAATGCTTTCTCCCTGTTATTGGCTTTGCTCATTCAGGCCCATATTTTGACTCAGGCGCTATGCATGGGTATGCCTAAACTAGATTGTATGAGATATTTCCCCATATTGAATTacttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgagacTGTATGGTGGTTTGATTTCTCCTGTGCAGGTCTGCATGCAGTGAATGGGTGTATATTTGTGTGGGTGTATATTAACAGTgtctatgtactgtatgcatggAAAGGCCTTCTGCGTCACTGACCTAACCCCTCATTTCCATGCCAAAGTTACCCCTAATGGCCACATTTTATGGCTCAGATGGGTAATGGAATTAACAGCTACTCAGAGTGACATAAAAACGTTTTACTTTactggaagacattgtactataCCTAGAGGCACAATCAGGTTAAACATATGAGTTTTTAGGACATTTTTTGTGTATACCAGAGATTCATTTGAGTGATTTTAATCAGTGGGTCAAATCATGAGTGGTGTAGTTGATAAATTGAATATTCTTTTAGATAGGTTTATCTTATTACTATAATGTccattatgtactgtatgtcttacAAGGCTTTGTAAGGACATGTTAGTGATGTGTATTTCAAGTTTGCCTTTTACTCAACTCTCCCCATCCGTTCTTTAATGGTATTATCATTATtgtactataactttttattgttGATGTCTCTAATTTTCTTAgtatattttaatcattttacttAATCCTGCTGTTCTGATCAGTTTATGTCAGTTAAATGATAAATTGTAACCGTAGTATTGTTTCCTTTAGTTAATTGAAAGTAAAGCGCGGGGTGTAAGGCTGGAAGTTTTGTGGGTGGGCtttatttctttgtgttttcttttttttttactgtgacaTATTAAGGTCTttgtttctggatttttttttttctccaaataaaGCTGATAGGGTTTTCTGTTGTAAGGTATTTATGTGTTCTTTCCATTTATTCCTTAATACTTACAAGAATCTCCCCTATATTTGTGGCATTAATTTACTTTTTtcccaaataaaaaaactcataacC

Function

NR:

description
PREDICTED: transforming protein RhoA-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800270.1 True 2826 mRNA 0.41 5 19679491 19683947

Neighbor

gene id symbol gene type direction distance location
rbm10 LOC104956217 coding downstream 171 19668096 ~ 19679320 (-)
lrrc23 lrrc23 coding downstream 11579 19663372 ~ 19667912 (-)
tktb LOC104956237,LOC103362814,LOC108235280,LOC101069588 coding downstream 16638 19651238 ~ 19662853 (-)
si:dkey-32e6.6 LOC104956310 coding downstream 30114 19637014 ~ 19649377 (-)
bgnb bgn coding downstream 47468 19615646 ~ 19632023 (-)
usp21 LOC104956301,LOC100694066,LOC103362808 coding upstream 100 19684047 ~ 19689360 (-)
arhgef3l LOC102798503,LOC102311840,LOC101488135,LOC100693794 coding upstream 5604 19689551 ~ 19697541 (-)
uba1 uba1 coding upstream 14081 19698028 ~ 19716311 (-)
LOC120559929 NA coding upstream 15826 19699773 ~ 19699894 (-)
LOC120559928 NA coding upstream 17383 19701330 ~ 19701451 (-)
G51236 NA non-coding downstream 81983 19595594 ~ 19597508 (-)
G51228 lrtm1,LOC102799284 non-coding downstream 220086 19456652 ~ 19459405 (-)
G51147 NA non-coding downstream 264296 19327652 ~ 19415195 (-)
G51122 apeh,LOC103467450 non-coding downstream 451586 19227321 ~ 19227905 (-)
G51088 NA non-coding downstream 750656 18922863 ~ 18928835 (-)
G51266 NA non-coding upstream 141464 19825411 ~ 19850660 (-)
G51468 NA non-coding upstream 379161 20063108 ~ 20063536 (-)
G51467 NA non-coding upstream 381915 20065862 ~ 20073593 (-)
G51518 NA non-coding upstream 615104 20299051 ~ 20300666 (-)
LOC120558923 NA non-coding upstream 684039 20367986 ~ 20382875 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 601710 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 792596 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 1577919 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 1784409 17835080 ~ 17895082 (-)
G50712 birc7 other downstream 1989731 17688115 ~ 17689760 (-)
LOC120558911 LOC103362803,LOC100693258 other upstream 115258 19799205 ~ 19815318 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 1136224 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 1483957 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 1515393 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 2286105 21970052 ~ 22015043 (-)

Expression


Co-expression Network