tnni1a (tnni1,LOC108235179,LOC101156408,LOC103384557)


Basic Information

Item Value
gene id tnni1a
gene name tnni1,LOC108235179,LOC101156408,LOC103384557
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20143922 ~ 20149234 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800271.1
TTAAATAGAGGGACACCAAATCGTTGGCCTCATCTCTGATCTGGCCATCCTGCCTCTGCTGTTGTcgcatctctctctttcctgctTCTGACACCGtGAAATCTCATCAGCAGGATgcctgagcatgtgcaagAGAGGAAGCCAAAGATCTCAGCTTCGAGGAAGCTGATGCTCAAGAGTCTGATGGTGGCAAAGGCCAAGGAGGAATTGGAACAGGAGGTTGTGGTTaaagaggaggagaaacagAACTATCTGTCAGAGAGAGCTCCTCCTCTAAACACCAGCAGCCTGAGTCTTGCGCAACTACAGgACCTCTGCAGAGAGCTTCATGCCAAGATAGATGTGGTGGATGAGGAGCGATACGACATTGAAGCCAAAGTCATGCTCAACACACGTGAGATTAAAGACCTTAACATCAAGGTGTTGGACCTCAGGGGGAAATTTAAGAGACCTAGTCTTCGTCGTGTTCGTGTGTCTGCTGATGCCATCCTTCGCTCACTGCTGGGCTCAAAGCACAAAGTCTCCATGGACCTCCGGGCCAACCTCAAGTCTGTCAAGAAAGAGGATACTGAGAAGAAGAGGCCAGTAGAGGACAGTGACTGGAGGAAGAATGTGGAGGCCATGTCAGGGATGGAGGGAAGGAAGAAGATGTTTGATGCTGCTAAGGGTCCTGCCCAGTGAACCCAGAAGGTGATAGGCTGGGCTGGTGTCATGTGAGCGACATCACTCTTCCTGCATCTGAGTCAGTTTTGTTTTCTAACGGTCTATTGCAGCTTCTGGATTTCTGTCATTCTTGTGTATGCCCCTGCCATGTCCCTACACTCCTGAGGTTTTCTCCACTTTCCTTAAGAAGTGATCGGTTTGCTGTTCATTGATATGGTGCTATTATTTGTATTGTTCACATAATGGATATTGCACCTAAACCCCAGAGATTTAGTCTAGTAAAGAAAATTCAAAAAAGGCAGTTGAGGCTAGTATTGTAATCAGCAGGCCAAATGGTATTATAGCCAATAATAACATGGTCCGGCCGACTTAAACTGCATCTTTGATATTCTTGCTTGGCGATAAACTGTCCAAAAGCATGGCCTGTGGTTTTGTGAACTGTAAAAGTGATTTGCACTTCATCAGCTGGATTTatacatgcacaaacaacaacaacaacaatactgtaaaacacacaaaatgcatcTTCATTTCATTGTGCTTTTTTCTGTATAAATGTGTGCTCAATGAACAAtgtctttctttaaataaagaaatggggCAATCTTCATCCCTCTAAGATAATA

Function

symbol description
tnni1 Predicted to enable actin binding activity and metal ion binding activity. Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to act upstream of or within transition between fast and slow fiber and ventricular cardiac muscle tissue morphogenesis. Predicted to be located in cytosol. Predicted to be part of troponin complex.

NR:

description
PREDICTED: troponin I, slow skeletal muscle

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG:

id description
K10371 TNNI1; troponin I, slow skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800271.1 True 1289 mRNA 0.45 8 20143922 20149234

Neighbor

gene id symbol gene type direction distance location
lad1 NA coding downstream 1841 20134937 ~ 20142081 (-)
tnnt2a tnnt2 coding downstream 9290 20120845 ~ 20134632 (-)
LOC120558880 lgr6 coding downstream 102484 20004202 ~ 20041438 (-)
etv7 LOC102788405 coding downstream 147582 19990916 ~ 19996340 (-)
LOC120558903 NA coding downstream 154927 19984434 ~ 19988995 (-)
phlda3 phlda3,LOC101480121 coding upstream 6159 20155393 ~ 20157359 (-)
csrp1a csrp1,LOC102794587 coding upstream 9420 20158654 ~ 20168891 (-)
apobec2b LOC103374057,LOC106098463,LOC101478792 coding upstream 157206 20306440 ~ 20309466 (-)
si:dkey-109j17.5 LOC102081939,LOC102793824,LOC103374063,LOC101477867,LOC102209747 coding upstream 162192 20311426 ~ 20316022 (-)
ccdc115 NA coding upstream 167958 20317192 ~ 20321532 (-)
G51467 NA non-coding downstream 70329 20065862 ~ 20073593 (-)
G51468 NA non-coding downstream 80386 20063108 ~ 20063536 (-)
G51266 NA non-coding downstream 293262 19825411 ~ 19850660 (-)
G51236 NA non-coding downstream 546414 19595594 ~ 19597508 (-)
G51228 lrtm1,LOC102799284 non-coding downstream 684517 19456652 ~ 19459405 (-)
G51518 NA non-coding upstream 149817 20299051 ~ 20300666 (-)
LOC120558923 NA non-coding upstream 218752 20367986 ~ 20382875 (-)
G51544 NA non-coding upstream 292262 20441496 ~ 20441807 (-)
LOC120558476 NA non-coding upstream 513119 20662353 ~ 20663577 (-)
G51574 NA non-coding upstream 573416 20722650 ~ 20722998 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 328604 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 1066141 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 1257027 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 2042350 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 2248840 17835080 ~ 17895082 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 670937 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 1018670 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 1050106 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 1820818 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 2073915 22223149 ~ 22229421 (-)

Expression


Co-expression Network