hnrnpa1b (hnrnpa1)


Basic Information

Item Value
gene id hnrnpa1b
gene name hnrnpa1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20751583 ~ 20754530 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800290.1
CGAACTCCTGACCAATTGCTGTGTGAAAGAGGTGTTTCCTTTGCTATTTATTCTACTGTTCAGGAACGGGGGTAGGCTCGACTGACGCAGATCACTTCTCTCCGGCCTGTTCACAAGTCTTCAAGGATTTACTGCCAAGATGTCCAAAGATGTCCCACGTGAGCCGGAGCAGCTTCGCAAGCTGTTCATTGGAGGTTTGAGCTTCGAGACCACAGACGAAAGCCTGCGGGCTCATTTTGAGCAATGGGGGAGCCTTACAGACTGTGTGGTCATGAGGGATCCCACCAGCAAGAGATCCAGAGGCTTTGGCTTTGTTACATACTCGTCAGTGGATGAAGTTGATGCTGCCATGTCTGCCCGTCCCCATAAGGTTGATGGAAGAGTTGTTGAACCTAAGCGAGCCGTTTCCAGAGAGGACTCAAACCGGCCAGGTGCCCACGTAACAGTGAAAAAGATCTTCGTCGGGGGCATCAAGGAAGATACAGAGGAGTCACATCTTCGGGATTACTTCACACAGTTTGGCAAAATTGAGGTCATTGATATCATGACTGACCGTAATACTGGAAAGAAGCGGGGCTTCGCCTTTGTAACCTTTGACGATCATGATTCAGTTGACAGGATTGTCATTCAGAAATACCACACAATCAACTCTCACAACTGTGAAGTGCGGAAGGCTCTCACAAGGCAGGAAATGCAGACAGCAGGAATGGGTATGAGAGGAGGTCGCAGCAGCGGTGGAAGGCCTTATGACTACGACAGAGGCTTTAATCAGGGTGGCAGGGGTAGATATGGAGATGGTCCTTACAATTGCAATGgaggtggtggtggtggtggcggcgGCGGCGGCTATGGAGGTGGTCCCGGCGGTCCTGGTGGATATAATAATGGTGGAAACCGGGGGTATAACCAAGGTTACAACCAGGGCGGTGGCGGAGGCGGCGGGGGCTATGGAGGAAATGGAGGTTATGAAAGCAACGGTTATGgtaactgtggtggtggtgggggcggCGGTGGTGGGGGTGGCGGCAATAACTACAACAACATGGGCCACTACGACCCCCAGGCCTCCAACTTTGGCCCAATGAAAAACAACTTTGGTGGTGGCGGAGGAGGGGGCGTTGGCGGCAGGAACTTTGgTGGCTATGGAGCTGGTTCAAACAATGGTGGATATGGCCGTTCATCACGATTTTGAAATGTGAAGACTGAGTACTTAGGAGAGGAGAGCAAGGAGAGGAGAGCAAGCGAAGTGACAGGGCAGCTGCAGGTTTACCTCCTAATCTGCTCAGCCAAACAGTTGTGGCAGGTTACAGCTGCTGCAAGAAGAGATGTACAGTAGATAAATCATGGAGGGTCTTCATTTAaacgttgttttttgtttttttcatcaatGTGTTTATGGAAAGCAAGCATTCCAATGAGGTTTTATGtagattttttcttttcttttccttaagCCTGGTTTTTATTTGTAACTGCATCAAATCAAGCTGAAATAAACCATCATTCAGTTTTTTTACAAAG

Function

symbol description
hnrnpa1 Enables identical protein binding activity; nucleic acid binding activity; and protein domain specific binding activity. Involved in several processes, including cellular response to sodium arsenite; nucleocytoplasmic transport; and regulation of telomere maintenance via telomerase. Located in cytoplasm and nucleoplasm. Part of catalytic step 2 spliceosome. Implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Biomarker of Alzheimer's disease; hepatocellular carcinoma; and lung non-small cell carcinoma.

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein A1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800290.1 True 1521 mRNA 0.49 12 20751583 20754530

Neighbor

gene id symbol gene type direction distance location
copz1 copz1 coding downstream 10624 20730106 ~ 20740959 (-)
LOC120558914 LOC103360972,LOC103385138,LOC106524412,LOC101071942,LOC107092037 coding downstream 319852 20409537 ~ 20431731 (-)
fkbpl NA coding downstream 423244 20325451 ~ 20328339 (-)
ccdc115 NA coding downstream 430051 20317192 ~ 20321532 (-)
trnae-uuc_54 NA coding downstream 430745 20320767 ~ 20320838 (-)
hoxc1a LOC104956907 coding upstream 45569 20800099 ~ 20808534 (-)
LOC120558390 NA coding upstream 62888 20817418 ~ 20820599 (-)
hoxc4a hoxc4 coding upstream 74197 20828727 ~ 20833997 (-)
hoxc5a hoxc5,LOC100534464,LOC101471491 coding upstream 85421 20839951 ~ 20842893 (-)
hoxc6a hoxc6 coding upstream 89163 20843693 ~ 20845764 (-)
G51577 NA non-coding downstream 25682 20725627 ~ 20725901 (-)
G51574 NA non-coding downstream 28585 20722650 ~ 20722998 (-)
LOC120558476 NA non-coding downstream 88006 20662353 ~ 20663577 (-)
G51544 NA non-coding downstream 309776 20441496 ~ 20441807 (-)
LOC120558923 NA non-coding downstream 368708 20367986 ~ 20382875 (-)
G51589 hoxc10,hoxc8,hoxc11,LOC102193660,LOC100690382,LOC101470732,LOC103467376,LOC102786831,LOC106947643,LOC106565461,LOC105016991,LOC103385114 non-coding upstream 107696 20862226 ~ 20952782 (-)
G51614 NA non-coding upstream 270603 21025133 ~ 21031699 (-)
G51620 NA non-coding upstream 282552 21037082 ~ 21041944 (-)
G51606 NA non-coding upstream 291519 21046049 ~ 21048786 (-)
G51673 NA non-coding upstream 412192 21166722 ~ 21167748 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 936265 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 1673802 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 1864688 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 2650011 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 2856501 17835080 ~ 17895082 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 65641 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 413374 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 444810 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 1215522 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 1468619 22223149 ~ 22229421 (-)

Expression


Co-expression Network