ccnt1 (ccnt1)


Basic Information

Item Value
gene id ccnt1
gene name ccnt1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8114125 ~ 8120699 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800405.1
GCGCAGAAATTTTAAACTATCGTCCTTGTCAGTGATGGCGGCTTCGTTAAGTTCTCTCCCTGTAAGCTGTAATAACAAATGGTACTACACACGGCAACAGATCGACAACAGCCCATCTCGGCGAGCTGGACTTGATCCTGACAAGGAACTGTCCTACAGACAACAGGCAGCGAACCTGCTCCAGGACATGGGACAGCGGCTCAATGTGTCCCAACTTACAATTAATACAGCCATTGTGTACATGCATCGATTCTACATGGTCCAGTCATTCACTAGATTTCACAGAAATGTCATATCTCCCGCCGCACTCTTCCTCGCCGCGAAGGTCGAGGAGCAGCCCCGGAAGCTGGAACATGTTATCAAGGTGGCCCATGCATGCCTCGATCCTCAGGATCCTCCACCAGATGTACGCAGTGATGCCTACCTGCAACAAGCCCAAGACCTGGTCATTCTTGAGAGCATAATACTCCAGACCTTGGCTTTTGAAATCACCATTGACCATCCTCATACTCATGTTGTCAAGTGCACTCAGCTCGTCAGAGTTGTTCCAGCGAGTAAGGATCTTGCTCAAACGTCATACTTTATGGCCACTAACAGTCTGCACTTGACCACGTTCTGCCTGCAGTACAGTCCGCCGGTTGTGGCCTGCGTGTGCATCCATCTCGCCTGCAAATGGTCCAACTGGGAGATCCCCGTGTCCACAGACGGCAAACACTGGTGGGAGTATGTCGATCCCACAGTTACCCTCGAGCTGCTGGATGAGCTCACACACGAGTTCCTGCAGATTCTGGAGAAAACACCCAGCCGGTTGAAACGGATTCGCAACTGGAAGGCTGGAGGGCAGACCCCAAAAGCCAAGCCAAAAGTCCAGGAGGAGGGGGACCAGAGGGACACCATGATGAGCATGATCTCCATGGCCTCGTCGGAGAGCACCGTGGCAGGCTTGATGAGCCTCTCTGCTCCGCCTTccgccgcctcctcctcctcgtccgtCGGCGACAAGGACCGGGGGGAGTCTGGCAGCGCCGCGACTTGGAGTGGCAAAGGCCAGGCCGGAACCGAGCAGCAGCCCAACGACGTTCACGTCCCAGCTAAGGTGTCGCTGAGCGAGTACCGGGCCAAGAACGCCGACGTCCTGGCTGCCCAGAAGAGGAAGCTCGAGAACATGGAGGCCAGCGTGAAGAGGGACTACGCCAACGCCGCCCAGGCTCTCATtggtcagcagcagcagaggaaggAGAAGCAGCCGCATCACCACCAGCAgtccagctcctcctcctccgacaACCCGTCGCCCATAATTCTGAAAATCCCCCTGGAGAAGGAGAGGCACGAGAGGACCTCTCTCAAAATGCGCTTACCCCTAGCTGGGGGAGGCGGCGGCGGCCATAGTGGCGGCGCCCGAGGTCAGGAACAGGACATCAAAGTCCGAATACGAGTGCCTGAGAAGCAAAGGGGGAGTTCGGGAGAGGAGGGCAAGAGCAGGGACAAGCACAGGGAGCGGTCtaaccaccaccatcaccaccaccaccaccattcCTCCTCCACGGGTGCCTCGCTCTCCTCTTCGCACAAACATTCGTCTGGCTCCAGTGGGGCTGTCGGAGGCAGCAAAAAAGTCCCCAGCGACTCTTCTAGAACCAGCTCTTCGTCGTCGTCGTCCGCGTCGCGCAAGCGGACGCACTCCCAAGAGCCCACGGCAGGCCCCCACCCTGCCTCTAAAGCCAGCAAGTCCTCCAGGAATCCCTACCAGCTGCcgtccctctcttcctcctctgggcAAACTCTGGGCCACGGCCCTGACATTCTCCCCGCCCTGggcctcccccaccacccagGGATCTATCCGCACTCCAAGGGCGACAAGACGGACACTAACGGGCACGGCGCGGCCGGCGGGGCCCAGTCAAACGAGTACCAGGACACGTTTGAAATGCTGAACTCGCTTCTGAGCGCGCAGGGGGTCCAGCCGTCCCAGCCGTCCATGTTTGACTACAGATCCCAATACGGGGAGTACCGCTACAGCGGCGGCTCCAGAGGGAGCAACTCCAGGCCCCCGCCCCTCCCTTCAGAACCGCCTCCCCCACTGCCGCCGTTACCCAAATAGGATCGTCATCAGAAGACACATTATACACATTGTACTTGACATCCCGGACATCCATCTTGTTACATAAAGTATTGtataatgttgttgtttttgtttttaaactagCCCAACTATTTTTTTACAGGCTTCAGCGTGACAGCAATGAAATGTACTGGTGAGATAAATGAGTTTGCaaccttttttctttattttttacatttgtggGGCAATAATGAGAGGCTTTAAAAGCttgtgaaatgtgtttgtggggggggggaatacaGGAAAGTGTAGATAATATCTTTTGCTCTTCTGTTTTACTCAAATGAAATGTGATGATGGGACCTGGTCATTTTAGCATCGCTGTCTTGAAATCATGAGGAAACAAAGATTTCCATCACATACCTTTTTAGGTCTTCTtaccgattttttttttttttttttttttataatgtttttatagtatgttatttattaattgaatgcttttaaaaaagaaaaaaatgaaaaaacatagtCCCTTTTTgtacccttttttttaaaggtttttggcAGAGGGATATTTCTTCATCAAGACTGTACAGGCTAGTTTGAGAGTGCATGTCTCTAAAGCCatcttttcaatatttttgtctaatttttc

Function

symbol description
ccnt1 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of DNA-templated transcription, elongation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Orthologous to human CCNT1 (cyclin T1).

NR:

description
PREDICTED: cyclin-T1 isoform X1

GO: NA

KEGG:

id description
K15188 CCNT; cyclin T

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800405.1 True 2729 mRNA 0.53 9 8114125 8120699

Neighbor

gene id symbol gene type direction distance location
kansl2 kansl2,LOC102799133 coding downstream 1890 8100939 ~ 8112235 (-)
LOC120559931 NA coding downstream 7930 8106061 ~ 8106195 (-)
nckap5l nckap5l coding downstream 13404 8044961 ~ 8100721 (-)
agap2 agap2,LOC102796960,LOC100691413,LOC102307379 coding downstream 171044 7900773 ~ 7943081 (-)
LOC120558974 zbtb39,LOC102796472 coding downstream 215832 7889827 ~ 7898293 (-)
LOC120558984 sarnp,LOC102800079 coding upstream 2848 8123547 ~ 8130737 (-)
LOC120558989 tuba1c,LOC106676044,LOC102211704,LOC103363443,LOC103148207,LOC107557552,LOC108255233 coding upstream 43770 8164469 ~ 8169726 (-)
LOC120558991 LOC108255233,LOC108247626,LOC103363443,LOC102224440,LOC102211704,LOC108251018 coding upstream 51491 8172190 ~ 8174992 (-)
jph2 jph2,LOC104937215 coding upstream 67369 8188068 ~ 8217881 (-)
fitm2 fitm2 coding upstream 131479 8252178 ~ 8255966 (-)
G47971 NA non-coding downstream 39890 8047299 ~ 8074235 (-)
G47972 NA non-coding downstream 63704 8047822 ~ 8050421 (-)
G47956 NA non-coding downstream 119393 7991869 ~ 7994732 (-)
G47949 NA non-coding downstream 158869 7932949 ~ 7955256 (-)
G47837 NA non-coding downstream 490646 7607891 ~ 7623479 (-)
G47935 LOC107659949,LOC107714908,LOC106456382,LOC103385300 non-coding upstream 57956 8178655 ~ 8179100 (-)
LOC120559498 NA non-coding upstream 161248 8281947 ~ 8296468 (-)
G48010 ttpal non-coding upstream 209418 8330117 ~ 8333521 (-)
G48128 NA non-coding upstream 490999 8611698 ~ 8654319 (-)
G48153 NA non-coding upstream 586841 8707540 ~ 8707965 (-)
G47937 gpr182,LOC103467901,LOC103130457,LOC106963994 other downstream 227275 7815151 ~ 7886850 (-)
G47814 NA other downstream 615323 7485427 ~ 7498802 (-)
LOC120558602 NA other downstream 1077750 6955204 ~ 7036375 (-)
G47638 NA other downstream 1308419 6804141 ~ 6805706 (-)
G47624 NA other downstream 1392396 6696445 ~ 6721729 (-)
ada ada other upstream 260418 8381117 ~ 8409734 (-)
LOC120559289 LOC106911506,LOC106515592 other upstream 582266 8702965 ~ 8705483 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other upstream 1258301 9379000 ~ 9408403 (-)
plekhg5b plekhg5 other upstream 1306507 9427206 ~ 9519455 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other upstream 1569030 9689729 ~ 9724134 (-)

Expression


Co-expression Network