LOC120558984 (sarnp,LOC102800079)


Basic Information

Item Value
gene id LOC120558984
gene name sarnp,LOC102800079
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8123547 ~ 8130737 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800406.1
GGCGGCGCTGTGAAATAAAGGGAGTGGGAGCGGAGGGGTTCAGAAGTAGAGCCGCTCCACTTTGATTGGAGGAAGTACTACATCAACAAAGAAAGATGGCCGAAGTGATTGAGCTGCAAAAACTCAAGcTTGCTGAACTGAGGCAGGAGTGCGAGGCCCGAGGTCTGGACACCAAGGGAAACAAAGGAGAGCTCATTGCCCGACTGCAAGCCTATCTGGAGGAGCACGAGGAAGATGTGGATGTAGATGAGGTGCTGGCAGAGGATACAGAGGACTTTCCTAAAGTTGAGAGTGCCAACGATGTAAAAGACGAGAAGGATTCCGAGTCTACTGAGTGCGAGCCacCTGCTGATAAGAAGGTGGTGAAAATAGCTCCTCCGTCATCTTCTGGTGAAAGACTACAAAAAAGAGCTGAACGTTTCAACCTGCctgcaacagcagagagcaaaaAGGCCATACGTGCAGCAAGGTTTGGTGAATCCACAGAGAATACCAGTCCCGCTCCAGGCGCCGTTGCCAACAGCAAAGCTCCTGTGAACGTCGATCAGCTGAAGAAGAGAGCAGAACGATTTGGCATGAATGTTTCGTCCGTTTCACAAAAGATTGAGGAGGATGAAAAGCTgaaaaagaggaaggagaggttTGGGgtcacagcagctgcaggcGTAGCTGTTTCAGCCGATGTCGagGCAAAGAAAATGAAGCGGGCTGAAAGATTTGGAAAGAGTGAATAATGTTTTTAGagcctgtatttttttttttttttgtaaagcattTTCATTACTGCACAACACAGAGATCCCTGAATATGACACATGTCACTAATGGGATTCCTGTAAATCAAAAGTATAATTAAATGCAAAGATAAATGGGTCA

Function

symbol description
sarnp Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human SARNP (SAP domain containing ribonucleoprotein).

NR:

description
PREDICTED: SAP domain-containing ribonucleoprotein

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18732 SARNP, CIP29, THO1; SAP domain-containing ribonucleoprotein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800406.1 True 876 mRNA 0.47 11 8123547 8130737

Neighbor

gene id symbol gene type direction distance location
ccnt1 ccnt1 coding downstream 2848 8114125 ~ 8120699 (-)
kansl2 kansl2,LOC102799133 coding downstream 11312 8100939 ~ 8112235 (-)
LOC120559931 NA coding downstream 17352 8106061 ~ 8106195 (-)
nckap5l nckap5l coding downstream 22826 8044961 ~ 8100721 (-)
agap2 agap2,LOC102796960,LOC100691413,LOC102307379 coding downstream 180466 7900773 ~ 7943081 (-)
LOC120558989 tuba1c,LOC106676044,LOC102211704,LOC103363443,LOC103148207,LOC107557552,LOC108255233 coding upstream 33732 8164469 ~ 8169726 (-)
LOC120558991 LOC108255233,LOC108247626,LOC103363443,LOC102224440,LOC102211704,LOC108251018 coding upstream 41453 8172190 ~ 8174992 (-)
jph2 jph2,LOC104937215 coding upstream 57331 8188068 ~ 8217881 (-)
fitm2 fitm2 coding upstream 121441 8252178 ~ 8255966 (-)
LOC120559283 NA coding upstream 441942 8572679 ~ 8577776 (-)
G47971 NA non-coding downstream 49312 8047299 ~ 8074235 (-)
G47972 NA non-coding downstream 73126 8047822 ~ 8050421 (-)
G47956 NA non-coding downstream 128815 7991869 ~ 7994732 (-)
G47949 NA non-coding downstream 168291 7932949 ~ 7955256 (-)
G47837 NA non-coding downstream 500068 7607891 ~ 7623479 (-)
G47935 LOC107659949,LOC107714908,LOC106456382,LOC103385300 non-coding upstream 47918 8178655 ~ 8179100 (-)
LOC120559498 NA non-coding upstream 151210 8281947 ~ 8296468 (-)
G48010 ttpal non-coding upstream 199380 8330117 ~ 8333521 (-)
G48128 NA non-coding upstream 480961 8611698 ~ 8654319 (-)
G48153 NA non-coding upstream 576803 8707540 ~ 8707965 (-)
G47937 gpr182,LOC103467901,LOC103130457,LOC106963994 other downstream 236697 7815151 ~ 7886850 (-)
G47814 NA other downstream 624745 7485427 ~ 7498802 (-)
LOC120558602 NA other downstream 1087172 6955204 ~ 7036375 (-)
G47638 NA other downstream 1317841 6804141 ~ 6805706 (-)
G47624 NA other downstream 1401818 6696445 ~ 6721729 (-)
ada ada other upstream 250380 8381117 ~ 8409734 (-)
LOC120559289 LOC106911506,LOC106515592 other upstream 572228 8702965 ~ 8705483 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other upstream 1248263 9379000 ~ 9408403 (-)
plekhg5b plekhg5 other upstream 1296469 9427206 ~ 9519455 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other upstream 1558992 9689729 ~ 9724134 (-)

Expression


Co-expression Network