LOC120558989 (tuba1c,LOC106676044,LOC102211704,LOC103363443,LOC103148207,LOC107557552,LOC108255233)


Basic Information

Item Value
gene id LOC120558989
gene name tuba1c,LOC106676044,LOC102211704,LOC103363443,LOC103148207,LOC107557552,LOC108255233
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8164469 ~ 8169726 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800410.1
AAACGCCCCGCCTTAAAAACCAGCGCTAGCGTCTCACACAGCCCTCCTAGAAGCGCAGTTGTGAGAGAGTATAATCAGTCTCTTTATCCTTATTTCAAGCCCTTTAGAAGCAGCGTCAGGAAACATGCGTGAGTGTATCTCAGTGCACGTTGGTCAGGCTGGTGTCCAAATTGGCAATGCCTGCTGGGAGCTTTACTGCCTGGAACATGGCATCCAGCCGGACGGACAGATGCCCAGTGACAAGACCATCGGTGGAGGAGACGATTCCTTCACCACCTTCTTCAGTGAGACTGGAGCTGGAAAGCACAGCCCGAGGGCTGTTTTTGTCGACCTGGAGCCTACTGTCATCGATGAGGTGCGTACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTGATCACCGGCAAGGAGGATGCTGCCAACAACTACGCCCGTGGACACTACACCATCGGCAAAGAGATCATCGACCTGGTGCTGGACCGGATCCGCAAACTGGCTGACCAGTGCACTGGCCTTCAGGGCTTCCTGGTTTTCCACAGCTTCGGAGGTGGCACCGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGTCTGTCTGTCGACTACGGCAAGAAGTCCAAGCTGGAGTTTTCCGTCTACCCAGCTCCCCAGGTGTCCACCGCTGTGGTGGAGCCCTACAATGCAATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGTTCTTTCATGGTGGACAACGAGGCCATCTATGATATCTGCCGTAGGAACCTCGATATCGAGCGTCCTTCTTACACCAACCTCAACAGGTTGATCAGTCAGATTGTGTCCTCCGTCACTGCCTCCCTTCGTTTCGACGGTGCCCTCAATGTTGATCTGACAGAGTTCCAGACCAACTTGGTGCCATATCCCCGTATCCACTTCCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAAAAGGCTTTCCATGAGCAAATAACAGTGGCAGAAATCACAACTGCCTGCTTTGAACCAGCCAACCAGTTTGTGAAATGTGACCCTCGCCACGGCAAATACATGGCCTGCTGCCTTTTGTATCGTGGTGATGTGGTGCCCAAAGATGTAAATGCTGCCATTGCCACCATTAAAACCAAGCGCTCCATCCAGTTTGTGGACTGGTGCCCCACTGGTTTCAAGGTGGGCATCAACTACCAGCCGCCCACTGTAGTTCCTGGTGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCTCGGCTTGACCACAAGTTTGATCTGATGTACGCTAAGCGTGCCTTTGTTCACTGGTATGTGGGTGaggggatggaggagggagagtTCTCTGAGGCCAGAGAGGACATGGCAGCTCTGGAGAAGGATTATGAGGAGGTGGGAGTCGACTCTAttgagggggagggagaggaggaaggagaggaataTTAAAAGGTGCTAGTTAAACAGGAAACAATTTAATTTCATTCCTCAAATACGTTCCAAAAAATGTTTGTCTATTCACTTCCAGCTTGGCTGTTCAAAATGAAACTGATAATGTTAAGTTAATGTGATAGGAAGGGCCAGAGAGGACATAGGCAGGTTGTTGGTTTGGAGTTCATTCAAGGGTGATGAAGAGGATTATTGAAAGGGACAAAGCACTAGTTAAACAGGAAACTGTTGCTTCAAATTAAATGCATTCCACTGAAATTGTCATTCCAAAAAAATGTTAAGTTGGTTTGAAATAAATTTCCTGTAACAAAaa
>XM_039800411.1
ACCAGCGCTAGCGTCTCACACAGCCCTCCTAGAAGCGCAGTTGTGAGAGAGTATAATCAGTCTCTTTATCCTTATTTCAAGCCCTTTAGAAGCAGCGTCAGGAAACATGGGCCGTTCTTTCTGATCCCACCCTCACCCTGTGCCCATGTGCGCCTGGCCACGAAATTTCCAAAAAGGCACACTCCCAACGCACTTGACAGGGCGCCCGCGGTTTCCTCTGCTGcgcacagagcagcagcagctaaccATCGACTTTTGGAGCGTGAGTGTATCTCAGTGCACGTTGGTCAGGCTGGTGTCCAAATTGGCAATGCCTGCTGGGAGCTTTACTGCCTGGAACATGGCATCCAGCCGGACGGACAGATGCCCAGTGACAAGACCATCGGTGGAGGAGACGATTCCTTCACCACCTTCTTCAGTGAGACTGGAGCTGGAAAGCACAGCCCGAGGGCTGTTTTTGTCGACCTGGAGCCTACTGTCATCGATGAGGTGCGTACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTGATCACCGGCAAGGAGGATGCTGCCAACAACTACGCCCGTGGACACTACACCATCGGCAAAGAGATCATCGACCTGGTGCTGGACCGGATCCGCAAACTGGCTGACCAGTGCACTGGCCTTCAGGGCTTCCTGGTTTTCCACAGCTTCGGAGGTGGCACCGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGTCTGTCTGTCGACTACGGCAAGAAGTCCAAGCTGGAGTTTTCCGTCTACCCAGCTCCCCAGGTGTCCACCGCTGTGGTGGAGCCCTACAATGCAATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGTTCTTTCATGGTGGACAACGAGGCCATCTATGATATCTGCCGTAGGAACCTCGATATCGAGCGTCCTTCTTACACCAACCTCAACAGGTTGATCAGTCAGATTGTGTCCTCCGTCACTGCCTCCCTTCGTTTCGACGGTGCCCTCAATGTTGATCTGACAGAGTTCCAGACCAACTTGGTGCCATATCCCCGTATCCACTTCCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAAAAGGCTTTCCATGAGCAAATAACAGTGGCAGAAATCACAACTGCCTGCTTTGAACCAGCCAACCAGTTTGTGAAATGTGACCCTCGCCACGGCAAATACATGGCCTGCTGCCTTTTGTATCGTGGTGATGTGGTGCCCAAAGATGTAAATGCTGCCATTGCCACCATTAAAACCAAGCGCTCCATCCAGTTTGTGGACTGGTGCCCCACTGGTTTCAAGGTGGGCATCAACTACCAGCCGCCCACTGTAGTTCCTGGTGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCTCGGCTTGACCACAAGTTTGATCTGATGTACGCTAAGCGTGCCTTTGTTCACTGGTATGTGGGTGaggggatggaggagggagagtTCTCTGAGGCCAGAGAGGACATGGCAGCTCTGGAGAAGGATTATGAGGAGGTGGGAGTCGACTCTAttgagggggagggagaggaggaaggagaggaataTTAAAAGGTGCTAGTTAAACAGGAAACAATTTAATTTCATTCCTCAAATACGTTCCAAAAAATGTTTGTCTATTCACTTCCAGCTTGGCTGTTCAAAATGAAACTGATAATGTTAAGTTAATGTGATAGGAAGGGCCAGAGAGGACATAGGCAGGTTGTTGGTTTGGAGTTCATTCAAGGGTGATGAAGAGGATTATTGAAAGGGACAAAGCACTAGTTAAACAGGAAACTGTTGCTTCAAATTAAATGCATTCCACTGAAATTGTCATTCCAAAAAAATGTTAAGTTGGTTTGAAATAAATTTCCTGTAACAAAaa

Function

symbol description
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

NR:

description
tubulin alpha chain

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800410.1 False 1793 mRNA 0.51 4 8164469 8169726
XM_039800411.1 True 1927 mRNA 0.52 5 8164469 8169708

Neighbor

gene id symbol gene type direction distance location
LOC120558984 sarnp,LOC102800079 coding downstream 33732 8123547 ~ 8130737 (-)
ccnt1 ccnt1 coding downstream 43770 8114125 ~ 8120699 (-)
kansl2 kansl2,LOC102799133 coding downstream 52234 8100939 ~ 8112235 (-)
LOC120559931 NA coding downstream 58274 8106061 ~ 8106195 (-)
nckap5l nckap5l coding downstream 63748 8044961 ~ 8100721 (-)
LOC120558991 LOC108255233,LOC108247626,LOC103363443,LOC102224440,LOC102211704,LOC108251018 coding upstream 2464 8172190 ~ 8174992 (-)
jph2 jph2,LOC104937215 coding upstream 18342 8188068 ~ 8217881 (-)
fitm2 fitm2 coding upstream 82452 8252178 ~ 8255966 (-)
LOC120559283 NA coding upstream 402953 8572679 ~ 8577776 (-)
gdi1 gdi1,LOC105918302,LOC100709395 coding upstream 463329 8633055 ~ 8643551 (-)
G47971 NA non-coding downstream 90234 8047299 ~ 8074235 (-)
G47972 NA non-coding downstream 114048 8047822 ~ 8050421 (-)
G47956 NA non-coding downstream 169737 7991869 ~ 7994732 (-)
G47949 NA non-coding downstream 209213 7932949 ~ 7955256 (-)
G47837 NA non-coding downstream 540990 7607891 ~ 7623479 (-)
G47935 LOC107659949,LOC107714908,LOC106456382,LOC103385300 non-coding upstream 8929 8178655 ~ 8179100 (-)
LOC120559498 NA non-coding upstream 112221 8281947 ~ 8296468 (-)
G48010 ttpal non-coding upstream 160391 8330117 ~ 8333521 (-)
G48128 NA non-coding upstream 441972 8611698 ~ 8654319 (-)
G48153 NA non-coding upstream 537814 8707540 ~ 8707965 (-)
G47937 gpr182,LOC103467901,LOC103130457,LOC106963994 other downstream 277619 7815151 ~ 7886850 (-)
G47814 NA other downstream 665667 7485427 ~ 7498802 (-)
LOC120558602 NA other downstream 1128094 6955204 ~ 7036375 (-)
G47638 NA other downstream 1358763 6804141 ~ 6805706 (-)
G47624 NA other downstream 1442740 6696445 ~ 6721729 (-)
ada ada other upstream 211391 8381117 ~ 8409734 (-)
LOC120559289 LOC106911506,LOC106515592 other upstream 533239 8702965 ~ 8705483 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other upstream 1209274 9379000 ~ 9408403 (-)
plekhg5b plekhg5 other upstream 1257480 9427206 ~ 9519455 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other upstream 1520003 9689729 ~ 9724134 (-)

Expression


Co-expression Network