parapinopsina (LOC103370869,LOC104963629)


Basic Information

Item Value
gene id parapinopsina
gene name LOC103370869,LOC104963629
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18930975 ~ 18933494 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800430.1
ATGGAGCACCTGCATAATGGAAACTCCTCATCGTCTCACAGCTCAGTCAACACAGAGCTCATGTCTCGGACTGGCTACACAGTACTGGCCATTATCATGGGTGTGTTCTCTGTGGCGGGGATCGCCCTCAATGTCCTGGTGATCGTGGTGACAATAAGACACAGAAAGCTGAGGCAGCCACTCAGCTATGCCCTGGTGAACTTGGCCATATGCGACCTGGGCTGTGCTGTATTTGGAGGTCTGACCACCACAGTAACCAATGCCATAGGATACTTTAGCCTGGGACGTGTGGGCTGTGTGTTAGAGGGCTTTGCTGTTTCCTTTTTTGGTATAGCGGGTCTGTGCACAGTAGGAATCATTTCTGTTGAGCGCTACATAGTGGTGTGCTATCCCATGGGTGCTGTCCTGTTCCAGACCAGACACGCTGTTGCTGGAGTGCTGCTGTCCTGGCTGTGGTCGTTTGTGTGGAACACTCCACCTCTGTTTGGTTGGGGAAGTTTTGAGCTGGAGGGCGTTAAGACCTCCTGCGCTCCTAACTGGTACAGCCGGGATGTCGGGAACATGTCCTACATCATCATATACTTTTCACTTTGCTTTGCCGTGCCCTTCTCCATTATCATTGTGTGTTACTCACGACTCTTGTGGACCCTCCACAAGGTGACTAAACTGCAGATTTCTGACGCTGGCAACACAAATCGTGTGGAGGGGCAGGTGGCACGTATGATAGTGGTGATGGTGTTGGCTTTCCTAGTGACCTGGCTGCCATATGCTGCCATGGCACTTGCTGTCATAATGGACTCAAGTTTATATATTGACCCCATCATCGCTACCATACCTGTCTACCTTGCTAAAAGCAGCACTGTCTACAACCCCATCATATACATTTTCATGAACAGACAGtttcgAGGATACACTATTTCCACTGTCCTGTGTGGATGGAACCCGTGGGCCTCAGATTCAGAAATTACTGAAGGCGAAAACACGATGGCTTCTTTCATCAAGAGCCAAAGAGTCTCAACTAAAGAATCTTTGAAAGAATAAAA

Function

NR:

description
parapinopsin

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800430.1 True 1043 mRNA 0.49 5 18930975 18933494

Neighbor

gene id symbol gene type direction distance location
si:ch211-117c9.5 slc6a8,LOC101473935,LOC102296397,LOC106523826,LOC103370863,LOC102778284 coding downstream 57806 18855940 ~ 18873169 (-)
LOC120559674 LOC103370862 coding downstream 104203 18818842 ~ 18826772 (-)
LOC120559673 LOC104946588,LOC103370859 coding downstream 113145 18801947 ~ 18817830 (-)
samhd1 samhd1 coding downstream 143692 18775750 ~ 18787283 (-)
LOC120558486 tp53inp2 coding downstream 207766 18713626 ~ 18723209 (-)
capza1b capza1,LOC104955722,LOC103367229 coding upstream 287526 19221020 ~ 19225831 (-)
cacna2d3a LOC103362818,LOC101467919 coding upstream 505134 19438628 ~ 19575574 (-)
atp6ap1lb LOC104933206,LOC103362820,LOC100695140,LOC101467308 coding upstream 654790 19588284 ~ 19602069 (-)
b4galt3 LOC103362816,LOC104933217,LOC104966142 coding upstream 671262 19604756 ~ 19614597 (-)
bgnb bgn coding upstream 682152 19615646 ~ 19632023 (-)
G51088 NA non-coding downstream 2140 18922863 ~ 18928835 (-)
G51069 NA non-coding downstream 172474 18758042 ~ 18758501 (-)
G51068 sna2 non-coding downstream 190632 18738483 ~ 18740343 (-)
G51064 NA non-coding downstream 217762 18712675 ~ 18713213 (-)
G50991 NA non-coding downstream 295740 18634465 ~ 18635235 (-)
G51122 apeh,LOC103467450 non-coding upstream 293827 19227321 ~ 19227905 (-)
G51147 NA non-coding upstream 394158 19327652 ~ 19415195 (-)
G51228 lrtm1,LOC102799284 non-coding upstream 523158 19456652 ~ 19459405 (-)
G51236 NA non-coding upstream 662100 19595594 ~ 19597508 (-)
G51266 NA non-coding upstream 891917 19825411 ~ 19850660 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 44080 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 829403 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 1035893 17835080 ~ 17895082 (-)
G50712 birc7 other downstream 1241215 17688115 ~ 17689760 (-)
LOC120559328 smim4 other downstream 1815928 17106834 ~ 17115047 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 12474 18945968 ~ 19077781 (-)
LOC120558911 LOC103362803,LOC100693258 other upstream 865711 19799205 ~ 19815318 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 1886677 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 2234410 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 2265846 21199340 ~ 21216719 (-)

Expression


Co-expression Network