lrrc23 (lrrc23)


Basic Information

Item Value
gene id lrrc23
gene name lrrc23
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19663372 ~ 19667912 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800433.1
GGCTGTTAAGTTTCCATGGCAACTTCAACAAACGCGGTTTTTGGTTTGCTCGGTCAGATATCAACTGCAGTTGGCTTTAGTTTAACActtatgttagcttctagctacTTCCTACGATTACTAGCTAAGTAAGTTAACGTTGTTTTTTGCATTTCGGTGTCTTTATAATAGTTGAAATGTTCAGTTACATGGTTAAGGTTAGCTAGCTGCTGTAACTTGGCAGGCCTTGCAACAGTCCCATAAAGcactaacgctagcttgctacaGCTAGTTTAGTTACGTTAACCCAGTCAGTTCTTACGACGCTTAAACTCCATGCAGtgtgactagctagctagctagttaaccgCTTGTCAGCTGAGTTACCAACTGGTCCGCTGCAGTGACCCGCTACTTTTTCTGATAACACGAGCCAAATTGACCAGAATGTCTGACATGGATGAAGATGCAGTGTTGTCTGATGGAACGttagagggagaggaagaaacGCATCAAGAAGGACCCGGAGAGGACGAGAAgTATTTAGGACTGAATGACATTGCCGCAATCAGCAGTTACACTCACCTCCGTTTTCTGGACATATCCAACAACCACCTTATTGATCTTGCTCCTCTGGCATCTCTGACTCAGCTGCTCTGGCTGAAGGTTGACAATAATGCAGTATCGTGCTTCAAAGGGCAACCTTTCGCTCAGTTGACCTACTTGCAGTGGCTGAGTATGGCAGTGAACCGGCTAATGGACCTGGATGGCCTGGTCGGGCCTGCCTTGGAGAGCCTCAATCTTACAGGTAATGGTATTCAGAGAGTGAAATGCCTTCAGAGTGGCTGTTTTGCCAACCTGGTAACTCTAGAGCTGAGGGGAAACCACTTGGAAACCACTGATGGCATCAACCTTCCCAACCTGCGACGATTATATATGGCCCAAAATGTCATCAAGGATCTGAAAGGTTTAGAAAGGCTAGAGCGCCTTACCACCCTTCATCTTCGAGACAACCAGCTAGATACTCTGGATGGCCTCAGCCCCAACATGAAGTGTCTCCAATACCTCAATGTCAGAGGCAATGCAATTTTAGATGAGAATGCCCTAAAAGGCCTTGGGCTTGTGTCCAAAACTCTGCGGGCTTTGGTTCTTTCTGAGAATCCTCTAGTGGAAACGACAGACTACCGGCTGAGTGTACTGATTCTTCTGCCACAGCTCGAGCGACTTGACAAAGATCTCGTCTCCCCGGAGGAGAGGACTGAGGCCCGGGAGAGACTcaagGAACTTAAAGAAGAGGAAATATCTGAGCCACAAGAAATGCAATGATGGCCAAAATGAGGAAGTGTTTGACTTCCTTGAAACACAGGCTTGGTGTATATAGGTGGGTGATGTGATTGGGTTGTATGAGAAGCGTTGTATAACTTGTATGATGCACTCTGTATCTGTAAATGTGCACAAATAGGGTTGCTTTGTGTCATGTTATTACACTATTACAGccaatctatttttttttaacaataaaatacaaaataaaaatgtctaatGCATCTATTGATATGTACAAATGCAAATAATCAGTCACAAAGCAATGTGTCTGTGACCAATGCATAAGAAATGAGGGAGTATTTCTGTTGCTGGACAAACTGTTTCCCTGAGTAAGGATGAGAGGGCAAAATCTGACACCATTTCCCTGTTGGCAGCCATCCAACTTTAGCTTTAAGGGAACAGTGACATGCAATGGATATGTATGGAAAAAAATCCCCGTATGTAGTCTTTACTGTCCACCTAAGTA

Function

symbol description
lrrc23 Acts upstream of or within cilium movement involved in otolith formation. Predicted to be active in cytosol. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; pronephric duct; and spinal cord neural keel. Orthologous to human LRRC23 (leucine rich repeat containing 23).

NR:

description
leucine-rich repeat-containing protein 23

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800433.1 True 1771 mRNA 0.44 8 19663372 19667912

Neighbor

gene id symbol gene type direction distance location
tktb LOC104956237,LOC103362814,LOC108235280,LOC101069588 coding downstream 519 19651238 ~ 19662853 (-)
si:dkey-32e6.6 LOC104956310 coding downstream 13995 19637014 ~ 19649377 (-)
bgnb bgn coding downstream 31349 19615646 ~ 19632023 (-)
b4galt3 LOC103362816,LOC104933217,LOC104966142 coding downstream 48775 19604756 ~ 19614597 (-)
atp6ap1lb LOC104933206,LOC103362820,LOC100695140,LOC101467308 coding downstream 61303 19588284 ~ 19602069 (-)
rbm10 LOC104956217 coding upstream 184 19668096 ~ 19679320 (-)
LOC120558915 LOC103362809,LOC100696538,LOC104956202,LOC102311006,LOC102199655 coding upstream 11579 19679491 ~ 19683947 (-)
usp21 LOC104956301,LOC100694066,LOC103362808 coding upstream 16135 19684047 ~ 19689360 (-)
arhgef3l LOC102798503,LOC102311840,LOC101488135,LOC100693794 coding upstream 21639 19689551 ~ 19697541 (-)
uba1 uba1 coding upstream 30116 19698028 ~ 19716311 (-)
G51236 NA non-coding downstream 65864 19595594 ~ 19597508 (-)
G51228 lrtm1,LOC102799284 non-coding downstream 203967 19456652 ~ 19459405 (-)
G51147 NA non-coding downstream 248177 19327652 ~ 19415195 (-)
G51122 apeh,LOC103467450 non-coding downstream 435467 19227321 ~ 19227905 (-)
G51088 NA non-coding downstream 734537 18922863 ~ 18928835 (-)
G51266 NA non-coding upstream 157499 19825411 ~ 19850660 (-)
G51468 NA non-coding upstream 395196 20063108 ~ 20063536 (-)
G51467 NA non-coding upstream 397950 20065862 ~ 20073593 (-)
G51518 NA non-coding upstream 631139 20299051 ~ 20300666 (-)
LOC120558923 NA non-coding upstream 700074 20367986 ~ 20382875 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 585591 18945968 ~ 19077781 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other downstream 776477 18874755 ~ 18886895 (-)
samd10b samd10,LOC107570869 other downstream 1561800 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 1768290 17835080 ~ 17895082 (-)
G50712 birc7 other downstream 1973612 17688115 ~ 17689760 (-)
LOC120558911 LOC103362803,LOC100693258 other upstream 131293 19799205 ~ 19815318 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 1152259 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 1499992 21167904 ~ 21199043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other upstream 1531428 21199340 ~ 21216719 (-)
si:dkey-151g10.3 wnk3 other upstream 2302140 21970052 ~ 22015043 (-)

Expression


Co-expression Network