si:ch211-117c9.5 (slc6a8,LOC101473935,LOC102296397,LOC106523826,LOC103370863,LOC102778284)


Basic Information

Item Value
gene id si:ch211-117c9.5
gene name slc6a8,LOC101473935,LOC102296397,LOC106523826,LOC103370863,LOC102778284
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18855940 ~ 18873169 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800560.1
TCCGTCACACTTAACTGACCGTGGAGCAGATCACATTCTTCGTCCGTCAAACCACTGCATCGCGTAAAGGTTCATGGACTTCTAACTGGACTGTTtaaaccacacacaaaaaaagcttCACCCTAAGGCGCAGTATCATTTTCTTTTAACTGTTATCCATGAGATTCTTCAGGCTTACCTTCAAGTGCTTCGTCGACTGCTTTTGAATCTCCTTTGTCAACGGCTGAACTGACCGCGGCGCTTTGTGAAATTGTCCATCTCTTGGCTGAGCTGAGGGGTTCCAACGTGTGATCATCACAAAAACtgcgatttctttttttatttcgaTAAGGCGAAATTACAATCTCAGCGAATCAAAAAGACAACTGGAGCCCTGCATACCAGGCGGCTACATCTCTCTGTCTGCCCCTCTGAGCCCACCGGGGTGCCTTGCTAGCCAGGCACATTCATCAAACTTCAGCAGCCCCTGGCTCAAACCATCAGCCAGCttgctttacaaaaaaaaacaagatttgttTTTGTGCAGGTACCCTACAACATGTCACCAGAGTTGAAAGAGAATAGCCAAGGTGAAATCAGCCTCCCCCAGTTGGAGGTAGGGAGCCTGTCTGAGGAGGAGGGCGGGGGATCAGCTCGCCCCCTGGTGCCTGTGCCTGGAGCGGGCCCAGGGTGTGGTGAAGGCGGAGGGGCTGGCCCACTGCAGACCCAGGACGGGGCTGCAGCTGGGAGTGGAAATGGGGCTGTAGCAGTACCAGTGGTGGAGAGAGAAACTTGGACCAGGCAGATGGACTTCATCATGTCCTGCGTGGGTTTTGCTGTCGGCTTGGGCAACGTGTGGCGGTTCCCTTACCTTTGCTACAAGAACGGAGGAGGAGTTTTCCTGATCCCCTACTTGCTCATTGTGTTCATCGGAGGCATCCCAGTCTTCTTCCTGGAGATTGCACTGGGGCAATTCATGAAGCAGGGAGGGGTCTCTGCTTGGAACATCGCACCCCTCTTCAAAGGTTTGGGCTTGGCCTCAATGGTGATAGTGTTCTTCTGTAACACCTATTACATCATGATTCTTGTGTGGGCCCTTTACTTTCTCTTTCACTCCTTCACCAACGAGCTGCCATGGGCCACCTGTGGACACCCCTGGAACACCCCCAACTGTACACAGGACTTCCGTCGAGCCTGCCACAACCGCAGTGCTGCCCAGGCGGCTCTGCCATCGTCTTCTGCCAACCTCCTCTCCTCCACGTCCCCACTGAACCTGTCTTCAGCCCAGCTCCTTCTCAACGGAAGCTGCCCAGAGGCTGAGGGCATGCGCTCCCCAGTCATCGAGTTCTGGGAACGGAAAGTGCTCCGTCTGTCTGGTGGGCTGCACGAGCCTGGTGACATCAGCTATGAGATGGTGCTGTGTCTCATAGTCACCTGGATCATTGTTTACTTCTGCATGTGGAAAGGAGTTAAATCTACTGGCAAGGTTGTTTACTTCACAGCTCTGTTCCCCTACCTGGTTCTGGTCGTTCTTTTGGCCCATGGAGTCACTCTTCCCGGAGCTTTAGATGGGATTGTTTACTACTTGAAACCAGACTGGTCCAAACTTGGAGAAGCACAGGTGTGGATTGATGCAGGCACTCAGATTTTCTTCTCCTATGCCATCGGACTGGGCGCTTTGACTGCGCTGGGCAGCTACAATCGCTTCCATAACAACTGTTACCAGGATGCATTCTTGCTGGCCTTCATTAACAGTGGAACGAGTTTCTTTGCAGGCTTTGTGGTGTTTTCCGTGCTGGGCTTCATGGCTGCAGAGCAAGGCGTGGACATCAGTAAGGTAGCTGAGAGTGGTCCAGGCCTGGCCTTTATAGCCTATCCCAAGGCTGTGACTCTGATGCCTATGGCGCCGCTCTGGGCAGCACTTTTCTTCTTTATGTTGCTCATACTAGGCCTGGATAGCCAGTTTGTTGGGGTAGAGGGTTTGATAACGGGAATCATGGACATGCTACCACCTAAATCTGCCCTGCGGCGAGAGGTGGTAGCAGCCATCTGCTGCGTCATCTGCTTCCTGATCGACATGTCCATGGTCACTGAGGGAGGAATGTATGTCTTCCAGCTGTTTGACTACTACTCTGCCAGTGGCATCACTCTGCTGTGGCAGGCCTTCTGGGAGTGTGTGGTGATTGCATGGGTCTATGGCGCAGACCGTTTCATGGATGACGTGGCTCGTATGATCGGCTATCAGCCCCTACCCTACATGAAGTGGTGCTGGTCCTACATCACGCCTTTTGTCTGTGTGGCAGTGTTCCTGTTCCACGTGGTGAACTACAAGCCTCTGACCTACAACACAGTGTACACTTACCCCTTGTGGGGTGAATTGCTTGGCTGGGCATTGGCCCTGTCCTCCATGCTCTGTATCCCTGTCACCGTTATCTACAAACTACTGCGCTGCAAAGGATCGTTGCGGGAGCGGTGGCAGCACCTAACCACCCCGGTTTGGGGCCGACATCACCTGGAGTACCTGGCCCCGGAGAGCGAGGCCAAACTGTTGCCCCCTGCCGAAACCAAGAGCACGCTTCTCTTTGAAAGTGTCATCTGATGAGCTAAGCCCCACAGAACACAGAGCCAAGGTCGCCCATGACAtcaacacacaaactacacaaaacacatgcacaccacACAGGCCTGGTTAAAGCAAAGTGCAGATTGGAAAATCCCTGGACAAATGGACCAAAGAAAAAGATGGGAGAAGAACTGAAACACACCCGCACCCATACAGTCATCACATGCTGTTACACgctctgctctgctttctgaCTCTACCTCGctgtctctcccctctttctgcTCCCTGCCTTTGTGCTGTCCCGTCCCGTCTCGTTCTGTGAATGTGATGTGTCCAGTGTAGTTGCAGTATCTTCCCTTTCTGTGCCTGTCTGTCAGGCTTTCAACAACATCATCCTTCCCAACATGTCATGCCATTTTGTGATGAATGAGCAGAAacttaaaagattaaaaatgaaAGACCTCATATCTGCTGCTGATATGCTATGGTC

Function

symbol description
slc6a8 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; eye; heart; optic vesicle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in creatine transporter deficiency and intellectual disability. Orthologous to human SLC6A8 (solute carrier family 6 member 8).

NR:

description
sodium- and chloride-dependent creatine transporter 1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05041 SLC6A8, CT1; solute carrier family 6 (neurotransmitter transporter, creatine) member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800560.1 True 3035 mRNA 0.52 14 18855940 18873169

Neighbor

gene id symbol gene type direction distance location
LOC120559674 LOC103370862 coding downstream 29168 18818842 ~ 18826772 (-)
LOC120559673 LOC104946588,LOC103370859 coding downstream 38110 18801947 ~ 18817830 (-)
samhd1 samhd1 coding downstream 68657 18775750 ~ 18787283 (-)
LOC120558486 tp53inp2 coding downstream 132731 18713626 ~ 18723209 (-)
LOC120558485 ggt7 coding downstream 144064 18700325 ~ 18711876 (-)
parapinopsina LOC103370869,LOC104963629 coding upstream 57806 18930975 ~ 18933494 (-)
capza1b capza1,LOC104955722,LOC103367229 coding upstream 347851 19221020 ~ 19225831 (-)
cacna2d3a LOC103362818,LOC101467919 coding upstream 565459 19438628 ~ 19575574 (-)
atp6ap1lb LOC104933206,LOC103362820,LOC100695140,LOC101467308 coding upstream 715115 19588284 ~ 19602069 (-)
b4galt3 LOC103362816,LOC104933217,LOC104966142 coding upstream 731587 19604756 ~ 19614597 (-)
G51069 NA non-coding downstream 97439 18758042 ~ 18758501 (-)
G51068 sna2 non-coding downstream 115597 18738483 ~ 18740343 (-)
G51064 NA non-coding downstream 142727 18712675 ~ 18713213 (-)
G50991 NA non-coding downstream 220705 18634465 ~ 18635235 (-)
G50945 NA non-coding downstream 350924 18504469 ~ 18505016 (-)
G51088 NA non-coding upstream 49694 18922863 ~ 18928835 (-)
G51122 apeh,LOC103467450 non-coding upstream 354152 19227321 ~ 19227905 (-)
G51147 NA non-coding upstream 454483 19327652 ~ 19415195 (-)
G51228 lrtm1,LOC102799284 non-coding upstream 583483 19456652 ~ 19459405 (-)
G51236 NA non-coding upstream 722425 19595594 ~ 19597508 (-)
samd10b samd10,LOC107570869 other downstream 754368 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 960858 17835080 ~ 17895082 (-)
G50712 birc7 other downstream 1166180 17688115 ~ 17689760 (-)
LOC120559328 smim4 other downstream 1740893 17106834 ~ 17115047 (-)
G50217 fgd3,LOC104966710 other downstream 2572084 16281044 ~ 16283856 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 1586 18874755 ~ 18886895 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 72799 18945968 ~ 19077781 (-)
LOC120558911 LOC103362803,LOC100693258 other upstream 926036 19799205 ~ 19815318 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 1947002 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 2294735 21167904 ~ 21199043 (-)

Expression


Co-expression Network